Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028676.1 Length=149218 Score E Sequences producing significant alignments: (Bits) Value seq63531 114 1e-20 >seq63531 Length=42858 Score = 114 bits (126), Expect = 1e-20 Identities = 238/345 (69%), Gaps = 16/345 (5%) Strand=Plus/Plus Query 119677 AGCTGCTCTTTCACCTGGTCGAAGTGATTGAGGTAGATGTGCGTGTCTCCGAAGCTGCCG 119736 |||||||| | ||||| |||| ||| ||| ||||| ||| ||| || | | | Sbjct 31833 AGCTGCTCCTCGACCTGCTCGACGTGGTTGTCGTAGACGTGGCAGTCGCCACCGGTCCAC 31892 Query 119737 ATCAGTTCGCCGACTTCGAGATTGCATTCT-CGA-GCAATGATGTGAGTCAGAAGAGCGT 119794 | | |||||||| ||||| | ||| || || || ||||| ||||| || |||| Sbjct 31893 ACGAAGTCGCCGACCTCGAGCCCGG--TCTGCGCCGCGATCATGTGGGTCAGCAGCGCGT 31950 Query 119795 ACGACGCGATGTTGAACGGAAGACCGAGGAACACATCGACTGACCTCTGGTTCCAGAT-G 119853 |||| |||||||||||||| | ||||||||||| || | || |||| | ||| | | Sbjct 31951 ACGAGGCGATGTTGAACGGGACACCGAGGAACATGTCCGCGCTCCGCTGG-TACAGCTGG 32009 Query 119854 CACGAGAGCTTCTTGTTTCGT--ACGTAGAACTGGAAAGAGTAGTGACACGGAGGAAGAG 119911 ||||||||||| | |||| |||| ||||||||| | ||| ||||| | || | Sbjct 32010 CACGAGAGCTTGCCG--TCGTTGACGTGGAACTGGAAGAACGCGTGGCACGGGGCCAGCG 32067 Query 119912 ACATCGATTCG---ATCTCAGGGACGTTCCATGCAGAAACCATGTGGCGCCGACCGTGAG 119968 |||| ||| | ||| | ||||||||| || || || ||| | || || || | Sbjct 32068 CCATC---TCGGGCACCTCGGCGACGTTCCACGCCGAGACGATGAGCCGGCGGGAGTCCG 32124 Query 119969 GATCCTTCAGGATAGATTCGATGACGTTATCGATCTGGTCGATGT 120013 | | || |||| |||||||| | ||||||||||||||| Sbjct 32125 GGTTGGTCCGGATCTGCTCGATGACCTGGGCGATCTGGTCGATGT 32169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476989709272320