Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq63454 141 4e-29 >seq63454 Length=19053 Score = 141 bits (156), Expect = 4e-29 Identities = 237/337 (70%), Gaps = 8/337 (2%) Strand=Plus/Plus Query 5917 CGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGC 5976 ||| || || | ||||| ||||| || ||||| | ||| |||||| |||||||||||| Sbjct 7256 CGCATCATCCTGACCCGCCCCGCGGTCGAGGCCGGCGAGCGGCTCGGGTTCCTGCCCGGC 7315 Query 5977 ACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGGTGATCGACCTG 6036 || || || ||||| | || |||||| |||| | |||||| | | ||| || Sbjct 7316 ACGCTGACGGACAAGATCGACCCGTACCTCCGCCCGCTCTACGACGCGCTCAACGAGATG 7375 Query 6037 GTCGGCCCGACGATGA---CGAAGCGCCTCCTCGAGTCGCGCCAGCTGGAGGTCGCCCCG 6093 | | ||| | || |||||| ||| || || || | | |||||||||||| Sbjct 7376 ATGGACCCCGAGCTGGTCCCGAAGCTCCTGGCCGC--CG-GCACGGTCGAGGTCGCCCCG 7432 Query 6094 CTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCTGACGAGATGCAG 6153 ||||| |||||||| ||||||||| | |||||| ||| | ||||| |||||| |||| Sbjct 7433 CTGGCGTACATGCGCGGCCGGACGCTGAACGACTCGTTCGTCGTCCTCGACGAGGCGCAG 7492 Query 6154 AACGCCAC-CCCGCGCCAGACCGCGCTGCTGGTGACCCGCCTGGGCTTCGGGACGAAGGC 6212 ||| |||| |||| | |||| | || | |||| ||||| |||||||| ||||| Sbjct 7493 AACACCACGCCCGAG-CAGATGAAGATGTTCCTGACGCGCCTCGGCTTCGGCTCGAAGAT 7551 Query 6213 CGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGCCG 6249 ||| | | || ||| ||||| |||||||||| Sbjct 7552 GGTCGTCACGGGGGACATCACCCAGGTCGACCTGCCG 7588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191343233157120