Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028778.1 Length=75626 Score E Sequences producing significant alignments: (Bits) Value seq63545 96.9 2e-15 seq63415 84.2 1e-11 >seq63545 Length=90175 Score = 96.9 bits (106), Expect = 2e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 55434 GGCAACCTCACCGCTGATCCGGAACTGAGGTTCTTGGACTCCGGCGTGGCGGTCGCTCAG 55493 |||||||||||||| || ||||| ||| | | | | | ||| | || || || | Sbjct 74066 GGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCGAAC 74007 Query 55494 TTCTCGGTGGCGTCTACTCCCCGCAAGTTCAACAAGCAGACGAACGAGTGGGAGGACGGC 55553 ||| | | ||||| || || |||| |||| || ||| ||||||||||| |||||||| Sbjct 74006 TTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGACGGC 73947 Query 55554 GAAACCGTGTTCCTCCGTACGTCGGTGTGGCGCGAGCTTGCAGAGGGCGCGGC 55606 || | ||||||||||| || |||||||||||| | || ||| || ||| Sbjct 73946 GACGCGCTGTTCCTCCGTGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGC 73894 >seq63415 Length=16791 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 63637 CGGTAGCTCAACTGGTAGAGCAGTGGTCTCCAAAGCCACCGGTTGCAGGTTCGACTCCTG 63696 |||| |||||| ||||||||||| |||||||||| || | |||||||||||||| ||||| Sbjct 5443 CGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502 Query 63697 TCCG 63700 |||| Sbjct 5503 TCCG 5506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241690725340048