Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq63531 446 8e-121 seq63545 141 4e-29 >seq63531 Length=42858 Score = 446 bits (494), Expect = 8e-121 Identities = 582/800 (73%), Gaps = 9/800 (1%) Strand=Plus/Minus Query 64056 ACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGA 64115 ||||||| | ||||| || | || || |||| ||| || |||||||| || || Sbjct 22961 ACGTCATCCAGACCGGGTCGGTGGCGCTCGACGTCGCGCTCGGCATCGGTGGCCTGCCCC 22902 Query 64116 GGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCC 64175 | ||||| | || || ||||||||||| || || || || ||| | || ||| ||| Sbjct 22901 GTGGCCGCATCGTCGAGATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACGATCC 22842 Query 64176 ACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACT 64235 |||| | ||||| || ||| ||||| |||| ||| || | ||||||||| |||||| Sbjct 22841 ACGCCATCGCCAACGCCCAGCGCGCCGGCGGCATCGCGGCGTTCATCGACGCGGAGCACG 22782 Query 64236 CCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 64295 |||| ||||| |||||||||||| ||||||||| ||| ||||| || | ||| | Sbjct 22781 CCCTCGACCCCGAGTACGCCAAGAAGCTCGGTGTCGACATCGACGCGCTGCTCGTGTCGC 22722 Query 64296 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 64355 |||| ||||| | |||||||| || ||||||| ||| | |||||| || ||| | Sbjct 22721 AGCCCGACACAGCGGAGCAGGCGCTCGAGATCGCGGACATGCTCGTCCGCTCCGGCTCGA 22662 Query 64356 TGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 64415 | | || ||||| | ||||| || ||||| || ||||| ||||||||| |||| |||| Sbjct 22661 TCGACCTCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCG 22602 Query 64416 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 64475 | || || ||| |||||||| ||||| |||||||||||||| |||||| | ||||||| Sbjct 22601 AGATGGGCGACTCCCACGTCGGTCTGCAGGCGCGCCTCATGTCCCAGGCCCTCCGCAAGC 22542 Query 64476 TCACCGG-CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 64534 || |||| | |||| ||| | || || | ||| |||||||| |||||||| Sbjct 22541 TCGCCGGTGGGCTGAACCAG-ACCCAGACCACGATGATCTTCATCAACCAGCTGCGCGAG 22483 Query 64535 AAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGG 64594 |||||||| |||| || ||| | ||||||||| | ||||| ||||| ||| | Sbjct 22482 AAGATCGG---CGTGTTCTTCGGTTCCCCCGAGACCACGTCCGGCGGTAAGGCGCTGAAG 22426 Query 64595 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAG 64654 |||||||| || ||||| | || |||| ||||||| || ||| || || Sbjct 22425 TTCTACGCGTCCGTCCGACTCGACATCCGGCGCATCGAGACGCTCAAGAGCGGGACCGAC 22366 Query 64655 GCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 64714 || ||||||||||||||||| || |||||||||||||||||| |||| ||||| | Sbjct 22365 GCCGTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAG 22306 Query 64715 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGAC 64774 | ||||||||| | || ||||||| | |||||||||||| |||| | ||||||||| Sbjct 22305 CAGGCCGAGTTCGACATCCTGTACGGCGTGGGCATCTCGCGAGAGGGCTCGCTCCTCGAC 22246 Query 64775 CTGGCCGTGTCG--CAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACA 64832 | | |||||| || ||| | || ||||||||||| ||||||| || |||| | | Sbjct 22245 TT--CGGTGTCGACCACGGCATCGTCAAGAAGTCGGGTGCCTGGTACACCTACGACGGCG 22188 Query 64833 AGAACGTCGCCCAGGGCAAG 64852 | | ||| ||||||||| Sbjct 22187 ACCAGCTCGGGCAGGGCAAG 22168 >seq63545 Length=90175 Score = 141 bits (156), Expect = 4e-29 Identities = 217/306 (71%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 58331 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCC 58390 || |||| ||| ||||| ||||| |||||||| | ||| || |||| ||||| || Sbjct 74069 GTGGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCG 74010 Query 58391 AACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGAC 58447 ||||||||| ||| ||||| | ||| |||| |||| ||| ||| ||| Sbjct 74009 AACTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGAC 73950 Query 58448 GGCGACGCCACATTCCTCCGCTGC-ACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 58506 |||||||| |||||||| ||| | | | |||||||| ||||||| ||||||||| Sbjct 73949 GGCGACGCGCTGTTCCTCCG-TGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGCGGG 73891 Query 58507 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 58566 || ||| ||| |||||||||| ||| || |||| |||||||||| | | Sbjct 73890 CTCACTGACGAAGGGCTCCCGCGTCATCGCGCAGGGTCGCCTCCGTCAGCGCTCCTACCA 73831 Query 58567 GACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 58626 | | |||||| | ||||||| ||||||| | ||||| |||||||||||||| || Sbjct 73830 GGACCGTGAGGGCCAGCAGCGCACGAGCATCGAGCTCGAGGTCGACGAGATCGGCCCCTC 73771 Query 58627 GCTGCG 58632 ||| || Sbjct 73770 GCTCCG 73765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232622566833104