Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_028807.1
Length=43150
Score E
Sequences producing significant alignments: (Bits) Value
seq63378 336 6e-88
>seq63378
Length=15302
Score = 336 bits (372), Expect = 6e-88
Identities = 864/1287 (67%), Gaps = 63/1287 (5%)
Strand=Plus/Plus
Query 18236 GGCCGAGTACGAGCCGTACGT-GCCTACCGCCGAGATGGCCGAGTTCGTGCTGCGGTACT 18294
|||||||||| ||||| | || |||| ||| | ||||||| || | || ||
Sbjct 2707 GGCCGAGTACCTCGACTACGTCGTCTCCCGC-GAGCAGCTCGAGTTCCTGATCCGCCTCT 2765
Query 18295 ACGAGCTCAACCCGATCACGGGCCGCCGGATC--GTCCGGCGCGGCGTGATCAGCCGGCC 18352
||||| || ||||| ||| || |||||| | || |||| | | ||| || ||
Sbjct 2766 ACGAGATCGACCCGCGCACCTGCAAGCGGATCAAGACCCGCGCTG--TCATCCAGCGACC 2823
Query 18353 GCGCGGGTGGGGGAAGTCCCCGTTCGTGTCTGCGATCGCGCTCGCCGAGGCGTGCGGCCC 18412
|| || ||||| |||||||||||| | | |||| || ||| ||| ||| | |
Sbjct 2824 CCGAGGCTGGGGCAAGTCCCCGTTCCTCGCCGCGACCGGCATCGGCGAAGCGCTCTTCGA 2883
Query 18413 CGTCGTCCCCAACGGTTGGGACGCCGACGGCGAGCCGGTCGGCATGGGGTGGGACCGGGT 18472
||||||||| |||| |||||||||||||| |||| |||| | |||| | || |
Sbjct 2884 GGTCGTCCCCGACGGCTGGGACGCCGACGGGCAGCCCGTCGCCCGCCCGTGG-ATCGACT 2942
Query 18473 CCGTACGCCGCTC------GTGCAGCTCGCCGCGGCGACGGAGAAACAGACCGAGAACAG 18526
| | | || || || | | || ||||| | | || | ||| ||||||
Sbjct 2943 TC--AAGACGATCATCAACGTCCCGGTCACCGCGACCTCCGATGACCAGGTGCAGAACAC 3000
Query 18527 TTGGATGCCGCTGCTCGAAATGGCGCGCTCGGGCCCGGTGCTCGACGAGTACGGGCTCGA 18586
||| ||| ||||||| ||||||||| | | | || | || |||||| || ||||
Sbjct 3001 GTGGGCACCGATGCTCGAGATGGCGCGCACCGACGCGCTTGTCAACGAGTTCGACGTCGA 3060
Query 18587 ACCGCTCGACACGGTCGTCT--ATCTGCGGCGCGGGAAGATCGAGCCGATCACTGCCTCG 18644
||| | |||||| || || ||| ||||| | |||||||||||| ||| | ||
Sbjct 3061 CCCGATGGACACGTTCATCGCGATCCCCGGCG--GCAAGATCGAGCCGCGCACCTCGTC- 3117
Query 18645 GCGACC--TCGGCGAAGGGCG--CGAAAGCGTG-CTTCGCGAGCCTCGACCAAACCGAGG 18699
|| || || |||||| | || | | ||||| | | ||||| |||||||
Sbjct 3118 -CGGCCGGTCCATCAAGGGCCTCCCCGGGCAGGTCGCCGCGATCATGGACCAGACCGAGG 3176
Query 18700 ATTGGCTGCCCGCGAACGGCGGTCGGAAGCTCGCGAAGACCATGCGGTTCAACGCGGGCA 18759
| ||| | | |||||||||| || ||| ||| ||| || |||| || |
Sbjct 3177 AGTGGGTCAAGGGCAACGGCGGTCTCCGCCTGGCGCAGAACATCCGCAACAACTCGACGA 3236
Query 18760 AGATCGGCGGCAGCCTGATCGAGACGCCTAACGCGTTCACGCCGGGCGAGGACAGCGTCG 18819
|| ||||| | ||||||| | || ||||||||||| || |||||| || ||||
Sbjct 3237 AGGCGTCCGGCATCACGATCGAGTCCCCGAACGCGTTCACCCCTGGCGAGAACTCGGTCG 3296
Query 18820 CCGAGCAGTCCGCGGCCGACTGGAA----AGCCATTC---GAGAGGGCCGG---TCGCG- 18868
||||| |||||| ||||||| | | | | || || | || | |||||
Sbjct 3297 CCGAGGCATCCGCGCGCGACTGGGAGCTGATCGAATCTGGGAAATACCCAGACCTCGCGG 3356
Query 18869 CGGCTCG---GGTCTGCTGTACGACCACCGCGAAGCGCCGGCCGACACCGACATGACCGA 18925
| || || | || || ||||||||||||||||||||||||||||||||| ||||
Sbjct 3357 CCGCCCGCCAGATC--CTCTACGACCACCGCGAAGCGCCGGCCGACACCGACCCCGCCGA 3414
Query 18926 CGAGCAGTCGCTCGTATACGGGCTGCGGGTCGCGTACGGAGACAGCTCGGATCACCCCGA 18985
| |||| || | ||| || ||| ||||||||| ||||||||||| ||||||||
Sbjct 3415 CCGCGAGTCCCTGATCGCCGGCCTCCGGTACGCGTACGGCGACAGCTCGGACCACCCCGA 3474
Query 18986 CGGGTGCGTGCTGCACGACCCGCCGTGCGCGCCGGGGTGGTCGCCGATCGAGCGGCTCGC 19045
||| ||||| | ||| | |||||||||| ||| || ||| | ||||||||||||| ||
Sbjct 3475 CGGCTGCGTCATCCACCAGCCGCCGTGCGAGCCCGGCTGGGCACCGATCGAGCGGCAGGC 3534
Query 19046 CGCGGATTTCTGGGACACCTCGAACGACCCGCAAGAGCTGCGGGCCGACTACTTGAACCA 19105
|| ||| ||||| |||||||||||||| | ||| || ||||||| | | |||||
Sbjct 3535 GCTGGCGTTCCTCGACACGTCGAACGACCCGCAGGTGCTCCGCGCCGACTTCCTCAACCA 3594
Query 19106 GATCACGCACGCCGCCGA--TAGCTGGTTGAGCGAGCCCGAGGTGCGCGCGGCG--TCCG 19161
|||||| |||| || ||| | | | || || ||||||| || | |||| || |
Sbjct 3595 GATCACCCACG-CGACGAACTCGTTCGTCTCGC-AGCCCGA---GCTCAAGGCGATTCAG 3649
Query 19162 AC-CTCGGCAAGGTCGTCGAGCCGGGCGAGCGCATCGTGCTCGGGTTCGACGGGTC---G 19217
| |||| ||||||| || | | ||||| || |||||| |||||||| || |
Sbjct 3650 GCACTCGACAAGGTCATCTCGAAGACCGAGCCGGTCACGCTCGGCTTCGACGGCTCCGAG 3709
Query 19218 CGGCGCCGGAACCGCAAGGTCA---CCGACGCGACCGCGCTTGTCGGGTGCCGACTGTCC 19274
||||| | | |||||| || ||||| |||| | || | || | | | ||
Sbjct 3710 GGGCGCAAGCCCGGCAAGGGCACTGCCGACTCGACGGTCCTCATTGGCTACTCCGTCACC 3769
Query 19275 GACGGGCATGTGTTCCCCATCGGCGTGTGGGAGCAGCCCGACGGCGCCGCCGGTCGTGAC 19334
| ||| | ||| ||||||| ||||||||||||||||| | ||||| | |
Sbjct 3770 CAGAAGCACCTCTTCAAGGTCGGCGTCTGGGAGCAGCCCGACGGACCTGCCGGCGAGGGC 3829
Query 19335 TGGCAGGTGCCGGTCGTCGAGGTGCTCGCCACGGTGCACGAAGCGTTCGACCGGTACGAC 19394
|||| |||||| ||||| | || | | | | |||||| | ||| ||
Sbjct 3830 TGGCGACCACCGGTCCTCGAGATCGAGGCGGCCATCCGGCAGGCGTTCAAGGACTACAAC 3889
Query 19395 GTCGTCGGCATGTACGCCGACC---CCGCGAAGTGGGAAAGCCACGTCGCGGAC-TGGGA 19450
|||||||| | |||||||||| ||||| ||||| | ||||||| | ||| |||||
Sbjct 3890 GTCGTCGGGTTCTACGCCGACCCGTCCGCGGGGTGGGCAGGCCACGT-GAAGACGTGGGA 3948
Query 19451 AGCGGCGTACGGGCGGCGGCTCAAGGT 19477
|| | |||| | ||||||||||||
Sbjct 3949 GGCCGAGTACTCGAAGCGGCTCAAGGT 3975
Score = 122 bits (134), Expect = 2e-23
Identities = 198/279 (71%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 17770 GACGGCGAGCTGCGCGAGTTCGTGTGGCCCGAGCGCACCCGCGAGTGGTGGCGCATGTGG 17829
||||||||||| ||||||||| |||||| | |||||||||||||||| |||||||
Sbjct 2307 GACGGCGAGCTCCGCGAGTTCAAGTGGCCGGCCATCACCCGCGAGTGGTGGGACATGTGG 2366
Query 17830 ATCGA-CTCGCCGCAGTCCGATC-ACTTCGGCTCGTCCGACTGGCAGTACCTACTCGACA 17887
||| |||||| | | || || ||||| | || |||||||| | || | |||||
Sbjct 2367 -GCGACCTCGCCCCTCT-CGCTCGACTTCACCGCGACCGACTGGTCCGAGCTGCGCGACA 2424
Query 17888 CGGCCCTGATTCACGCGCGGCTGTGGTCGGGCGAGCTGTCCGCGGCCGCCGAGCTGCGGC 17947
| || || || |||||||| ||| ||||| | ||||||||||| || |
Sbjct 2425 CCGCACTCATCCACGCGCGCTACTGGAACGGCGACATCAAGCTCGCCGCCGAGCTCCGTC 2484
Query 17948 TGCGCGTCGCTGCGTTCGGCGCGACGCCGGCGGACCGGGCCCGGCTCAGGATGGTTTTCG 18007
| ||| ||| |||||||||||| || | |||||| || |||||| |||| ||||
Sbjct 2485 TCCGCACCGCGAAGTTCGGCGCGACCCCCGAGGACCGCGCGCGGCTCCGGATCACGTTCG 2544
Query 18008 CCGAGGCGGACGGCGCC--GACGAGGGCCGCGGCGCGTC 18044
| |||| || | ||| ||||| | || | || ||||
Sbjct 2545 CGCAGGCTGAGGAGGCCGAGACGAAGACCACCGCCCGTC 2583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137854102070016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |