Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028807.1 Length=43150 Score E Sequences producing significant alignments: (Bits) Value seq63378 336 6e-88 >seq63378 Length=15302 Score = 336 bits (372), Expect = 6e-88 Identities = 864/1287 (67%), Gaps = 63/1287 (5%) Strand=Plus/Plus Query 18236 GGCCGAGTACGAGCCGTACGT-GCCTACCGCCGAGATGGCCGAGTTCGTGCTGCGGTACT 18294 |||||||||| ||||| | || |||| ||| | ||||||| || | || || Sbjct 2707 GGCCGAGTACCTCGACTACGTCGTCTCCCGC-GAGCAGCTCGAGTTCCTGATCCGCCTCT 2765 Query 18295 ACGAGCTCAACCCGATCACGGGCCGCCGGATC--GTCCGGCGCGGCGTGATCAGCCGGCC 18352 ||||| || ||||| ||| || |||||| | || |||| | | ||| || || Sbjct 2766 ACGAGATCGACCCGCGCACCTGCAAGCGGATCAAGACCCGCGCTG--TCATCCAGCGACC 2823 Query 18353 GCGCGGGTGGGGGAAGTCCCCGTTCGTGTCTGCGATCGCGCTCGCCGAGGCGTGCGGCCC 18412 || || ||||| |||||||||||| | | |||| || ||| ||| ||| | | Sbjct 2824 CCGAGGCTGGGGCAAGTCCCCGTTCCTCGCCGCGACCGGCATCGGCGAAGCGCTCTTCGA 2883 Query 18413 CGTCGTCCCCAACGGTTGGGACGCCGACGGCGAGCCGGTCGGCATGGGGTGGGACCGGGT 18472 ||||||||| |||| |||||||||||||| |||| |||| | |||| | || | Sbjct 2884 GGTCGTCCCCGACGGCTGGGACGCCGACGGGCAGCCCGTCGCCCGCCCGTGG-ATCGACT 2942 Query 18473 CCGTACGCCGCTC------GTGCAGCTCGCCGCGGCGACGGAGAAACAGACCGAGAACAG 18526 | | | || || || | | || ||||| | | || | ||| |||||| Sbjct 2943 TC--AAGACGATCATCAACGTCCCGGTCACCGCGACCTCCGATGACCAGGTGCAGAACAC 3000 Query 18527 TTGGATGCCGCTGCTCGAAATGGCGCGCTCGGGCCCGGTGCTCGACGAGTACGGGCTCGA 18586 ||| ||| ||||||| ||||||||| | | | || | || |||||| || |||| Sbjct 3001 GTGGGCACCGATGCTCGAGATGGCGCGCACCGACGCGCTTGTCAACGAGTTCGACGTCGA 3060 Query 18587 ACCGCTCGACACGGTCGTCT--ATCTGCGGCGCGGGAAGATCGAGCCGATCACTGCCTCG 18644 ||| | |||||| || || ||| ||||| | |||||||||||| ||| | || Sbjct 3061 CCCGATGGACACGTTCATCGCGATCCCCGGCG--GCAAGATCGAGCCGCGCACCTCGTC- 3117 Query 18645 GCGACC--TCGGCGAAGGGCG--CGAAAGCGTG-CTTCGCGAGCCTCGACCAAACCGAGG 18699 || || || |||||| | || | | ||||| | | ||||| ||||||| Sbjct 3118 -CGGCCGGTCCATCAAGGGCCTCCCCGGGCAGGTCGCCGCGATCATGGACCAGACCGAGG 3176 Query 18700 ATTGGCTGCCCGCGAACGGCGGTCGGAAGCTCGCGAAGACCATGCGGTTCAACGCGGGCA 18759 | ||| | | |||||||||| || ||| ||| ||| || |||| || | Sbjct 3177 AGTGGGTCAAGGGCAACGGCGGTCTCCGCCTGGCGCAGAACATCCGCAACAACTCGACGA 3236 Query 18760 AGATCGGCGGCAGCCTGATCGAGACGCCTAACGCGTTCACGCCGGGCGAGGACAGCGTCG 18819 || ||||| | ||||||| | || ||||||||||| || |||||| || |||| Sbjct 3237 AGGCGTCCGGCATCACGATCGAGTCCCCGAACGCGTTCACCCCTGGCGAGAACTCGGTCG 3296 Query 18820 CCGAGCAGTCCGCGGCCGACTGGAA----AGCCATTC---GAGAGGGCCGG---TCGCG- 18868 ||||| |||||| ||||||| | | | | || || | || | ||||| Sbjct 3297 CCGAGGCATCCGCGCGCGACTGGGAGCTGATCGAATCTGGGAAATACCCAGACCTCGCGG 3356 Query 18869 CGGCTCG---GGTCTGCTGTACGACCACCGCGAAGCGCCGGCCGACACCGACATGACCGA 18925 | || || | || || ||||||||||||||||||||||||||||||||| |||| Sbjct 3357 CCGCCCGCCAGATC--CTCTACGACCACCGCGAAGCGCCGGCCGACACCGACCCCGCCGA 3414 Query 18926 CGAGCAGTCGCTCGTATACGGGCTGCGGGTCGCGTACGGAGACAGCTCGGATCACCCCGA 18985 | |||| || | ||| || ||| ||||||||| ||||||||||| |||||||| Sbjct 3415 CCGCGAGTCCCTGATCGCCGGCCTCCGGTACGCGTACGGCGACAGCTCGGACCACCCCGA 3474 Query 18986 CGGGTGCGTGCTGCACGACCCGCCGTGCGCGCCGGGGTGGTCGCCGATCGAGCGGCTCGC 19045 ||| ||||| | ||| | |||||||||| ||| || ||| | ||||||||||||| || Sbjct 3475 CGGCTGCGTCATCCACCAGCCGCCGTGCGAGCCCGGCTGGGCACCGATCGAGCGGCAGGC 3534 Query 19046 CGCGGATTTCTGGGACACCTCGAACGACCCGCAAGAGCTGCGGGCCGACTACTTGAACCA 19105 || ||| ||||| |||||||||||||| | ||| || ||||||| | | ||||| Sbjct 3535 GCTGGCGTTCCTCGACACGTCGAACGACCCGCAGGTGCTCCGCGCCGACTTCCTCAACCA 3594 Query 19106 GATCACGCACGCCGCCGA--TAGCTGGTTGAGCGAGCCCGAGGTGCGCGCGGCG--TCCG 19161 |||||| |||| || ||| | | | || || ||||||| || | |||| || | Sbjct 3595 GATCACCCACG-CGACGAACTCGTTCGTCTCGC-AGCCCGA---GCTCAAGGCGATTCAG 3649 Query 19162 AC-CTCGGCAAGGTCGTCGAGCCGGGCGAGCGCATCGTGCTCGGGTTCGACGGGTC---G 19217 | |||| ||||||| || | | ||||| || |||||| |||||||| || | Sbjct 3650 GCACTCGACAAGGTCATCTCGAAGACCGAGCCGGTCACGCTCGGCTTCGACGGCTCCGAG 3709 Query 19218 CGGCGCCGGAACCGCAAGGTCA---CCGACGCGACCGCGCTTGTCGGGTGCCGACTGTCC 19274 ||||| | | |||||| || ||||| |||| | || | || | | | || Sbjct 3710 GGGCGCAAGCCCGGCAAGGGCACTGCCGACTCGACGGTCCTCATTGGCTACTCCGTCACC 3769 Query 19275 GACGGGCATGTGTTCCCCATCGGCGTGTGGGAGCAGCCCGACGGCGCCGCCGGTCGTGAC 19334 | ||| | ||| ||||||| ||||||||||||||||| | ||||| | | Sbjct 3770 CAGAAGCACCTCTTCAAGGTCGGCGTCTGGGAGCAGCCCGACGGACCTGCCGGCGAGGGC 3829 Query 19335 TGGCAGGTGCCGGTCGTCGAGGTGCTCGCCACGGTGCACGAAGCGTTCGACCGGTACGAC 19394 |||| |||||| ||||| | || | | | | |||||| | ||| || Sbjct 3830 TGGCGACCACCGGTCCTCGAGATCGAGGCGGCCATCCGGCAGGCGTTCAAGGACTACAAC 3889 Query 19395 GTCGTCGGCATGTACGCCGACC---CCGCGAAGTGGGAAAGCCACGTCGCGGAC-TGGGA 19450 |||||||| | |||||||||| ||||| ||||| | ||||||| | ||| ||||| Sbjct 3890 GTCGTCGGGTTCTACGCCGACCCGTCCGCGGGGTGGGCAGGCCACGT-GAAGACGTGGGA 3948 Query 19451 AGCGGCGTACGGGCGGCGGCTCAAGGT 19477 || | |||| | |||||||||||| Sbjct 3949 GGCCGAGTACTCGAAGCGGCTCAAGGT 3975 Score = 122 bits (134), Expect = 2e-23 Identities = 198/279 (71%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 17770 GACGGCGAGCTGCGCGAGTTCGTGTGGCCCGAGCGCACCCGCGAGTGGTGGCGCATGTGG 17829 ||||||||||| ||||||||| |||||| | |||||||||||||||| ||||||| Sbjct 2307 GACGGCGAGCTCCGCGAGTTCAAGTGGCCGGCCATCACCCGCGAGTGGTGGGACATGTGG 2366 Query 17830 ATCGA-CTCGCCGCAGTCCGATC-ACTTCGGCTCGTCCGACTGGCAGTACCTACTCGACA 17887 ||| |||||| | | || || ||||| | || |||||||| | || | ||||| Sbjct 2367 -GCGACCTCGCCCCTCT-CGCTCGACTTCACCGCGACCGACTGGTCCGAGCTGCGCGACA 2424 Query 17888 CGGCCCTGATTCACGCGCGGCTGTGGTCGGGCGAGCTGTCCGCGGCCGCCGAGCTGCGGC 17947 | || || || |||||||| ||| ||||| | ||||||||||| || | Sbjct 2425 CCGCACTCATCCACGCGCGCTACTGGAACGGCGACATCAAGCTCGCCGCCGAGCTCCGTC 2484 Query 17948 TGCGCGTCGCTGCGTTCGGCGCGACGCCGGCGGACCGGGCCCGGCTCAGGATGGTTTTCG 18007 | ||| ||| |||||||||||| || | |||||| || |||||| |||| |||| Sbjct 2485 TCCGCACCGCGAAGTTCGGCGCGACCCCCGAGGACCGCGCGCGGCTCCGGATCACGTTCG 2544 Query 18008 CCGAGGCGGACGGCGCC--GACGAGGGCCGCGGCGCGTC 18044 | |||| || | ||| ||||| | || | || |||| Sbjct 2545 CGCAGGCTGAGGAGGCCGAGACGAAGACCACCGCCCGTC 2583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137854102070016