Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_028827.1
Length=50165
Score E
Sequences producing significant alignments: (Bits) Value
seq61823 1144 0.0
>seq61823
Length=3776
Score = 1144 bits (1268), Expect = 0.0
Identities = 1825/2577 (71%), Gaps = 74/2577 (3%)
Strand=Plus/Minus
Query 38876 CCGAAGCGGATCTCGCTCTCCCCGTTCGGGGTGAAGGAGCTGTTCGAGACCGACACGTCG 38935
||||||||||| ||| || ||| | | |||| | | | |||| | |||||
Sbjct 2927 CCGAAGCGGATGTCG---TCACCGACGGCCGCGAAGAACCCGATCGACTCGTTGACGTCC 2871
Query 38936 GGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATCTTGTTC 38995
||||||| |||| | ||||||||| || |||| ||||||| ||||| |||||
Sbjct 2870 GGCGGCATGACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGGGCCAGCTTGTCG 2811
Query 38996 TTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTC 39055
| |||| || || ||||| |||| || ||||||||||||||||||||||||| |||
Sbjct 2810 CGGGCGTCACCGACGGAGGTCAGCAGCGCGGCCATGTACTCGGCCGGGTAGTGCGCCTTG 2751
Query 39056 AGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCG 39115
|||||||| || | | | | || | ||||||||||| ||||||||||||||||| |||
Sbjct 2750 AGGTACGCGGTCCAGAACGAGACCACGCCGTACGCCGCCGAGTGCGCCTTGTTGAACGCG 2691
Query 39116 TACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCGAGTAGCCT 39175
|| ||| ||| || | || | |||||||| | || ||| || | ||||||||||
Sbjct 2690 TAGTCGGAGAACGGCAGCAGGATGTCCCACAGGGTCTTGATCGCAGCGGCCGAGTAGCCG 2631
Query 39176 CGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTC 39235
|| || ||||||| |||| || ||| |||| |||| ||||| |||||||
Sbjct 2630 TTGTCCTGCATGCCCTTCTCGAAGCCGGCGTACTGCTTGTCCAG---CTCGGACTTCTTC 2574
Query 39236 TT---GCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATC 39292
|| ||||||||| || || || | ||| |||||||| ||| | | || |||| ||
Sbjct 2573 TTCTTGCCCATGGCGCGGCGGAGGATGTCCGCCTGGCCGAGGGAGAACCCGGCGACCTTC 2514
Query 39293 TGCGCC---GCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGG 39349
||||| ||| | |||||||||||||||||||| || ||||| |||| | | | |
Sbjct 2513 TGCGCGATGGCCATG---ACCTGCTCCTGGTAGATGATCAGGCCGTAGGTCGTGCCGATG 2457
Query 39350 ATCTCCCGCAGGGGCTCCTCCACCTCGGGGTGAATCGGCGAGATCGCCTGCTGTCCATTC 39409
|| ||| |||||||| || | ||| ||||| ||||||| ||||| ||||| || |||
Sbjct 2456 ATGTCCTTGAGGGGCTCTTCGAGCTCCGGGTGGATCGGCGTGATCGGCTGCTCGCCGTTC 2397
Query 39410 TTCCGGAGGGCATAGTTCGTGTGTGAGCCAACGCCCATCGGACCCGGACGGTACAGCGCG 39469
|| || || || ||||||||||| ||| | |||||||| |||||||||||||| |||
Sbjct 2396 TTGCGCAGCGCGTAGTTCGTGTGCGAGTTCGCACCCATCGGCCCCGGACGGTACAGGGCG 2337
Query 39470 ACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGCATC 39529
| || || |||||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct 2336 ATGAGCGCGGAGATGTCCTCGAAGTTGTCCGGCTTCATCAGGCGGAGCAGGCCGCGCATC 2277
Query 39530 GCACCGCCGTCGAGCTGGAACACCGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTC 39589
| |||||||||||||||||||| || ||||| || ||| ||| |||| | |
Sbjct 2276 GGGCCGCCGTCGAGCTGGAACACGCCCAGGGTGTCGCCGCGCTGCAGGAGCGCGTACGCC 2217
Query 39590 GGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGACGT-GCTCCCCACGGTTACGACG-GA 39647
|| ||| || ||| ||| |||| ||||||| || | ||||| ||||| || | ||
Sbjct 2216 TCGGGGTCCTCGAGCCCCATGGTCTCGAGGTCGAGGTCGATCCCC-CGGTT-CGTCTTGA 2159
Query 39648 TGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGCAGGCCGAGGAAGTCCATCTTGA 39707
|||| |||| |||||| | ||||||||||||||||| || || ||||||||||||||||
Sbjct 2158 TGTTGTCGAGGGCGTCACTGATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGA 2099
Query 39708 CCGCGCCCATGCTCTCGCACTG-GGGGTAGTCCCACTGCGTGACGGTGACGCCGTCCGCA 39766
| ||| | ||| | ||| |||||||| ||||||||||| | |||||||
Sbjct 2098 TCAGGCCGAGCGACTC-CGCTGCCGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGC 2040
Query 39767 GGACGGACCCACACCGGAAGGTGATCGACCAGGGGCTCGTTGGACATGATCACACCGGCC 39826
|| | | ||| | | |||| ||| || ||| | |||||||| || ||||||
Sbjct 2039 TCCCGCTTCATGATCGGGATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCGGCC 1980
Query 39827 GCGTGCACGCCCATCTGGCGAACCAGACCTTCGAGCCCGAGCGCAGTGTCGATCACCTCC 39886
|||||||| ||| |||||| ||| || ||||| |||||||| ||||||| |||| |
Sbjct 1979 GCGTGCACACCCCACTGGCGCTTCAGCCCCTCGAGGCCGAGCGCGGTGTCGAACACCGTC 1920
Query 39887 TTCGAGTCCTTGTCGTTCTCGTACAGGCC--CCGGATCTCGCCCGCCTCGTCGTAGCGCG 39944
|||| || |||| ||||| || | || |||| ||| | || || | | |||| |
Sbjct 1919 TTCGCCTCGGGGTCGGTCTCG-AC-GACCGTGCGGACGTCGACGGCTTCCTTGAAGCGGG 1862
Query 39945 GGTGCTCCGGGTTGAAGATCCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGT 40004
|||| ||| || ||||||||| || || || | ||||||||| | |||
Sbjct 1861 GGTGGTCCTTGTCGAAGATCCCAGTGAGCGGGATGTCCTTGCCCATCACGGGCGGCGGCA 1802
Query 40005 ACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCT 40064
||||||||| ||||||||||| | ||| || | | || ||||| | | |||||
Sbjct 1801 TCGCCTTGGTGAGCTTCTCGCCCATGCCGAACGGGAAGCCGAGGACGCGCGAGGAGTCCT 1742
Query 40065 TCATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCC 40124
||| ||| | |||||||||| |||| | || ||||||| || || || | ||
Sbjct 1741 TCAGCGCCTGCTTCGCCTTGATCGTGCCGTACGTGACGATCTGCGCCACGCGCTCCGACC 1682
Query 40125 CGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGT 40184
|||||||||||||||||||| ||| |||| ||||| |||||||| |||||||||| ||
Sbjct 1681 CGTACTTCTCGGTGACGTACTTGATCGCCTCACCGCGGCGCCGGTCGTCGAAGTCGACGT 1622
Query 40185 CAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCT 40244
| | ||||||||| || ||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 1621 CGAAGTCGGGCATCGAGACGCGGTCCGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCC 1562
Query 40245 CCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGC 40304
| || |||||||||||||| | | ||| || |||| ||||||||| | || |
Sbjct 1561 GGATCGGGTCGAGGTCGGTGATGCGCATCGCGTACGCCACCATCGAACCGGCACCGGAAC 1502
Query 40305 CTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGA 40364
| || || || ||||| | | |||||| | ||| | |||| ||||||||||||||| |
Sbjct 1501 CACGACCCGGGCCGACACGGATGCCGTTGTTCTTCGACCAGTTGATGAAGTCGGCGACCA 1442
Query 40365 CCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT-GGAGCTGC 40423
||||||||||| |||||||||||||||| |||| || | ||||||| | || || ||
Sbjct 1441 CCAGGAAGTAGCCCGGGAAGCCCATCTGGTTGATGATCCGGGTCTCGTAGTCGGCGC-GC 1383
Query 40424 T--TGCCGTGCTCGTAGTCGGTCCCGTTCGGGAACCG----TCGAGCTGCCCCACGGTGG 40477
| ||| |||| | | |||| ||| | || |||||| ||| || |
Sbjct 1382 TCCTGC--ACCTCGGGCGTGATGCCGTCGGGGTAGCGGTACTCGAGC--CCCTTCG--CG 1329
Query 40478 ACCTCGTCCTCGAACCAGGTCACCTCCGTGTGCCCCTCGGGCACCGGGAAGCGAGGCATG 40537
| ||| | ||||||||| | | ||| || | || ||||||||||||| ||||||
Sbjct 1328 ATCTCCTTCTCGAACCACGACTGCTCGGTCTCGCCGGCGGGCACCGGGAACTTCGGCATG 1269
Query 40538 -AG--GTCGGTGTGCTCGAACATGCCCGTCGTGTCGACACGCTCGGCGATCTCCAGCGTG 40594
|| | | ||| ||||| | || ||| | || ||||||||||| |||||||
Sbjct 1268 TAGTTGGCCGTGGTGTCGAA----CTCGACGT-TGCAC-CGCTCGGCGATGAGCAGCGTG 1215
Query 40595 GT-CCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGT 40653
| |||| || | | | | | ||| | | |||| ||||| || | |||
Sbjct 1214 TTGTCGCAGGCC-----TCGGGGTTGTCGCGGAAGAGGT-GCCG-CATCTGCGCCGGCGT 1162
Query 40654 CTTGATGTAGTACCCGGAGCCCTCGAACCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCC 40713
||| | |||| || || | | |||||| |||||||||||||| || ||||| | ||
Sbjct 1161 CTTCAGGTAGAACTCGTCGGCGTCGAACTTGAAGCGGTTCGGGTCGTTCAGCGTCGACCC 1102
Query 40714 GGTCTGGACGCAGAGTAGGGCATCGTGCGCCTTGCTCTCGTCGGCCGTG-ACGTAGTGGC 40772
|| ||| |||||||| || || |||||| |||| |||| || |||| |||||||
Sbjct 1101 GGACTGCACGCAGAGGAGCGCCGCGTGCGACTTGGCGTCGT-GGGCGTGCGTGTAGTGGA 1043
Query 40773 TGTCGTTGGTGACCACCGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAGGTCGTCGC 40832
|||||| ||| | ||| | | || |||||| ||| |||| ||| |||||| |
Sbjct 1042 GGTCGTTCGTGCCGACCAGCGGGATGTCGAGGTCCTTCGCCAGGCGGATCAGGTCGCCCA 983
Query 40833 GGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACCGGTCACGAC 40892
|| || ||||||||||| || ||||||||||| | ||| |||||| ||| |
Sbjct 982 TGATCCGGCGCTCGATCTCGAGCCCGTGGTCCATCACCTCGGCGAAGTAGTTGTCCTTGC 923
Query 40893 CGAACACCTCCAGGTA-CCGGCCAGCCTCCGCAACGGCCTGGTCGTACTGCCCGAGGTTG 40951
|||| | || |||| | ||| || || | ||||| ||||||||| ||||||
Sbjct 922 CGAAGATGTCGCGGTAGTCCGCC-GCTGCCTTGAGGGCCTCGTCGTACTGGCCGAGGCGC 864
Query 40952 AGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGTGGTGACGATCAGGCCCTCGTTGTGC 41011
|| || ||| |||| | || ||||||||||| || |||| | |||||||| |||
Sbjct 863 AGGCGCGTCTGGATCTCTCCCGAGGGGCAGCCCGTCGTCGCGATGATGCCCTCGTGGTGT 804
Query 41012 TCGGCGACGAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCTTGGTACGA 41070
|| | ||| |||| ||||||||| || ||| | || | ||||| | |||
Sbjct 803 TCCTGCAGGAGCTCGATGTCCATGCGGGG---CTTGAAGTAGTA-CCCCTCGAGCGACGC 748
Query 41071 CCGAGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCTCGGCGAGGATCGTGAG 41130
| || ||| | |||||||||| ||||||| |||||||||||| ||||| |
Sbjct 747 CTTCGACGACAGCCGGAACAGGTTGTGCATGCCGGTCGTGTTCTCGGCGAACATCGTCAT 688
Query 41131 GTGGGTGTACGCACCGCGACCGCTCACGTCGTAACGCTTCTGGTCCTCGGTGCCCCACTG 41190
||| ||||||| ||| |||| ||||||| | | | | || |||||| |
Sbjct 687 GTGCGTGTACGAACCCGCACCGGACACGTCG------TCCCCGCCACCGTCGCCCCAGCG 634
Query 41191 CAC-CCGCTCCTGATCGA--AGCGCGAGCCCGGAGCCATGTACGCCTCGATGCCGATGAT 41247
||| | | || || ||| | | | || || | |||||||||||| ||||||||||
Sbjct 633 CACACGGGTCTTGTCCGAGCGGTGGGTGCGGGGCGTGATGTACGCCTCGGTGCCGATGAT 574
Query 41248 CGGCTTGACCCCAGCGGCCGTAGCTGTGGTGAAGAAGTCGTGCGCACCGTGCAGGTTGCC 41307
||||||||| || ||||| | || | | |||| ||| ||| ||| || ||||||
Sbjct 573 CGGCTTGACGCCGCCGGCCTTGGCGGCCTTCCAGAACTCGAACGCGCCGAACATGTTGCC 514
Query 41308 GTGGTCGGTGACGGCGACTGCCGGGGAGCCCTGGCGGGCGACCTCGGCGACCATCTGCTT 41367
||||||||| || || || || || ||||||| |||| ||| || || | |
Sbjct 513 GTGGTCGGTCACCGCCACGGCGGGCATGCCCTGGGCGGCGGTCTCCGCCACGAGGTCGCC 454
Query 41368 CATCCGAGCGGCCCCGTCGAGGAGGCTGTACTCGGAGTGGTTGTGGAGGTGAACGAA 41424
| || ||||| |||||||| | ||||||| ||| ||| ||||| |||||
Sbjct 453 GAGTCGTGCGGCACCGTCGAGCATCGAGTACTCGCTGTGCACGTGCAGGTGGACGAA 397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160285131157536
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