Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq61823 1144 0.0 >seq61823 Length=3776 Score = 1144 bits (1268), Expect = 0.0 Identities = 1825/2577 (71%), Gaps = 74/2577 (3%) Strand=Plus/Minus Query 38876 CCGAAGCGGATCTCGCTCTCCCCGTTCGGGGTGAAGGAGCTGTTCGAGACCGACACGTCG 38935 ||||||||||| ||| || ||| | | |||| | | | |||| | ||||| Sbjct 2927 CCGAAGCGGATGTCG---TCACCGACGGCCGCGAAGAACCCGATCGACTCGTTGACGTCC 2871 Query 38936 GGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATCTTGTTC 38995 ||||||| |||| | ||||||||| || |||| ||||||| ||||| ||||| Sbjct 2870 GGCGGCATGACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGGGCCAGCTTGTCG 2811 Query 38996 TTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTC 39055 | |||| || || ||||| |||| || ||||||||||||||||||||||||| ||| Sbjct 2810 CGGGCGTCACCGACGGAGGTCAGCAGCGCGGCCATGTACTCGGCCGGGTAGTGCGCCTTG 2751 Query 39056 AGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCG 39115 |||||||| || | | | | || | ||||||||||| ||||||||||||||||| ||| Sbjct 2750 AGGTACGCGGTCCAGAACGAGACCACGCCGTACGCCGCCGAGTGCGCCTTGTTGAACGCG 2691 Query 39116 TACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCGAGTAGCCT 39175 || ||| ||| || | || | |||||||| | || ||| || | |||||||||| Sbjct 2690 TAGTCGGAGAACGGCAGCAGGATGTCCCACAGGGTCTTGATCGCAGCGGCCGAGTAGCCG 2631 Query 39176 CGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTC 39235 || || ||||||| |||| || ||| |||| |||| ||||| ||||||| Sbjct 2630 TTGTCCTGCATGCCCTTCTCGAAGCCGGCGTACTGCTTGTCCAG---CTCGGACTTCTTC 2574 Query 39236 TT---GCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATC 39292 || ||||||||| || || || | ||| |||||||| ||| | | || |||| || Sbjct 2573 TTCTTGCCCATGGCGCGGCGGAGGATGTCCGCCTGGCCGAGGGAGAACCCGGCGACCTTC 2514 Query 39293 TGCGCC---GCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGG 39349 ||||| ||| | |||||||||||||||||||| || ||||| |||| | | | | Sbjct 2513 TGCGCGATGGCCATG---ACCTGCTCCTGGTAGATGATCAGGCCGTAGGTCGTGCCGATG 2457 Query 39350 ATCTCCCGCAGGGGCTCCTCCACCTCGGGGTGAATCGGCGAGATCGCCTGCTGTCCATTC 39409 || ||| |||||||| || | ||| ||||| ||||||| ||||| ||||| || ||| Sbjct 2456 ATGTCCTTGAGGGGCTCTTCGAGCTCCGGGTGGATCGGCGTGATCGGCTGCTCGCCGTTC 2397 Query 39410 TTCCGGAGGGCATAGTTCGTGTGTGAGCCAACGCCCATCGGACCCGGACGGTACAGCGCG 39469 || || || || ||||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 2396 TTGCGCAGCGCGTAGTTCGTGTGCGAGTTCGCACCCATCGGCCCCGGACGGTACAGGGCG 2337 Query 39470 ACGACGGCCGAGATGTCCTCGAAGTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGCATC 39529 | || || |||||||||||||||||||| ||||||| ||||||||||||| ||||||| Sbjct 2336 ATGAGCGCGGAGATGTCCTCGAAGTTGTCCGGCTTCATCAGGCGGAGCAGGCCGCGCATC 2277 Query 39530 GCACCGCCGTCGAGCTGGAACACCGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTC 39589 | |||||||||||||||||||| || ||||| || ||| ||| |||| | | Sbjct 2276 GGGCCGCCGTCGAGCTGGAACACGCCCAGGGTGTCGCCGCGCTGCAGGAGCGCGTACGCC 2217 Query 39590 GGGGCGTCGTCCAGCGGGATGTTCTCCAGGTCGACGT-GCTCCCCACGGTTACGACG-GA 39647 || ||| || ||| ||| |||| ||||||| || | ||||| ||||| || | || Sbjct 2216 TCGGGGTCCTCGAGCCCCATGGTCTCGAGGTCGAGGTCGATCCCC-CGGTT-CGTCTTGA 2159 Query 39648 TGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGCAGGCCGAGGAAGTCCATCTTGA 39707 |||| |||| |||||| | ||||||||||||||||| || || |||||||||||||||| Sbjct 2158 TGTTGTCGAGGGCGTCACTGATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGA 2099 Query 39708 CCGCGCCCATGCTCTCGCACTG-GGGGTAGTCCCACTGCGTGACGGTGACGCCGTCCGCA 39766 | ||| | ||| | ||| |||||||| ||||||||||| | ||||||| Sbjct 2098 TCAGGCCGAGCGACTC-CGCTGCCGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGC 2040 Query 39767 GGACGGACCCACACCGGAAGGTGATCGACCAGGGGCTCGTTGGACATGATCACACCGGCC 39826 || | | ||| | | |||| ||| || ||| | |||||||| || |||||| Sbjct 2039 TCCCGCTTCATGATCGGGATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCGGCC 1980 Query 39827 GCGTGCACGCCCATCTGGCGAACCAGACCTTCGAGCCCGAGCGCAGTGTCGATCACCTCC 39886 |||||||| ||| |||||| ||| || ||||| |||||||| ||||||| |||| | Sbjct 1979 GCGTGCACACCCCACTGGCGCTTCAGCCCCTCGAGGCCGAGCGCGGTGTCGAACACCGTC 1920 Query 39887 TTCGAGTCCTTGTCGTTCTCGTACAGGCC--CCGGATCTCGCCCGCCTCGTCGTAGCGCG 39944 |||| || |||| ||||| || | || |||| ||| | || || | | |||| | Sbjct 1919 TTCGCCTCGGGGTCGGTCTCG-AC-GACCGTGCGGACGTCGACGGCTTCCTTGAAGCGGG 1862 Query 39945 GGTGCTCCGGGTTGAAGATCCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGT 40004 |||| ||| || ||||||||| || || || | ||||||||| | ||| Sbjct 1861 GGTGGTCCTTGTCGAAGATCCCAGTGAGCGGGATGTCCTTGCCCATCACGGGCGGCGGCA 1802 Query 40005 ACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCT 40064 ||||||||| ||||||||||| | ||| || | | || ||||| | | ||||| Sbjct 1801 TCGCCTTGGTGAGCTTCTCGCCCATGCCGAACGGGAAGCCGAGGACGCGCGAGGAGTCCT 1742 Query 40065 TCATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCC 40124 ||| ||| | |||||||||| |||| | || ||||||| || || || | || Sbjct 1741 TCAGCGCCTGCTTCGCCTTGATCGTGCCGTACGTGACGATCTGCGCCACGCGCTCCGACC 1682 Query 40125 CGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGT 40184 |||||||||||||||||||| ||| |||| ||||| |||||||| |||||||||| || Sbjct 1681 CGTACTTCTCGGTGACGTACTTGATCGCCTCACCGCGGCGCCGGTCGTCGAAGTCGACGT 1622 Query 40185 CAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCT 40244 | | ||||||||| || ||||| || ||||| ||||||||||||||||| ||||||||| Sbjct 1621 CGAAGTCGGGCATCGAGACGCGGTCCGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCC 1562 Query 40245 CCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGC 40304 | || |||||||||||||| | | ||| || |||| ||||||||| | || | Sbjct 1561 GGATCGGGTCGAGGTCGGTGATGCGCATCGCGTACGCCACCATCGAACCGGCACCGGAAC 1502 Query 40305 CTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGA 40364 | || || || ||||| | | |||||| | ||| | |||| ||||||||||||||| | Sbjct 1501 CACGACCCGGGCCGACACGGATGCCGTTGTTCTTCGACCAGTTGATGAAGTCGGCGACCA 1442 Query 40365 CCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT-GGAGCTGC 40423 ||||||||||| |||||||||||||||| |||| || | ||||||| | || || || Sbjct 1441 CCAGGAAGTAGCCCGGGAAGCCCATCTGGTTGATGATCCGGGTCTCGTAGTCGGCGC-GC 1383 Query 40424 T--TGCCGTGCTCGTAGTCGGTCCCGTTCGGGAACCG----TCGAGCTGCCCCACGGTGG 40477 | ||| |||| | | |||| ||| | || |||||| ||| || | Sbjct 1382 TCCTGC--ACCTCGGGCGTGATGCCGTCGGGGTAGCGGTACTCGAGC--CCCTTCG--CG 1329 Query 40478 ACCTCGTCCTCGAACCAGGTCACCTCCGTGTGCCCCTCGGGCACCGGGAAGCGAGGCATG 40537 | ||| | ||||||||| | | ||| || | || ||||||||||||| |||||| Sbjct 1328 ATCTCCTTCTCGAACCACGACTGCTCGGTCTCGCCGGCGGGCACCGGGAACTTCGGCATG 1269 Query 40538 -AG--GTCGGTGTGCTCGAACATGCCCGTCGTGTCGACACGCTCGGCGATCTCCAGCGTG 40594 || | | ||| ||||| | || ||| | || ||||||||||| ||||||| Sbjct 1268 TAGTTGGCCGTGGTGTCGAA----CTCGACGT-TGCAC-CGCTCGGCGATGAGCAGCGTG 1215 Query 40595 GT-CCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGCCGT 40653 | |||| || | | | | | ||| | | |||| ||||| || | ||| Sbjct 1214 TTGTCGCAGGCC-----TCGGGGTTGTCGCGGAAGAGGT-GCCG-CATCTGCGCCGGCGT 1162 Query 40654 CTTGATGTAGTACCCGGAGCCCTCGAACCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCC 40713 ||| | |||| || || | | |||||| |||||||||||||| || ||||| | || Sbjct 1161 CTTCAGGTAGAACTCGTCGGCGTCGAACTTGAAGCGGTTCGGGTCGTTCAGCGTCGACCC 1102 Query 40714 GGTCTGGACGCAGAGTAGGGCATCGTGCGCCTTGCTCTCGTCGGCCGTG-ACGTAGTGGC 40772 || ||| |||||||| || || |||||| |||| |||| || |||| ||||||| Sbjct 1101 GGACTGCACGCAGAGGAGCGCCGCGTGCGACTTGGCGTCGT-GGGCGTGCGTGTAGTGGA 1043 Query 40773 TGTCGTTGGTGACCACCGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAGGTCGTCGC 40832 |||||| ||| | ||| | | || |||||| ||| |||| ||| |||||| | Sbjct 1042 GGTCGTTCGTGCCGACCAGCGGGATGTCGAGGTCCTTCGCCAGGCGGATCAGGTCGCCCA 983 Query 40833 GGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACCGGTCACGAC 40892 || || ||||||||||| || ||||||||||| | ||| |||||| ||| | Sbjct 982 TGATCCGGCGCTCGATCTCGAGCCCGTGGTCCATCACCTCGGCGAAGTAGTTGTCCTTGC 923 Query 40893 CGAACACCTCCAGGTA-CCGGCCAGCCTCCGCAACGGCCTGGTCGTACTGCCCGAGGTTG 40951 |||| | || |||| | ||| || || | ||||| ||||||||| |||||| Sbjct 922 CGAAGATGTCGCGGTAGTCCGCC-GCTGCCTTGAGGGCCTCGTCGTACTGGCCGAGGCGC 864 Query 40952 AGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGTGGTGACGATCAGGCCCTCGTTGTGC 41011 || || ||| |||| | || ||||||||||| || |||| | |||||||| ||| Sbjct 863 AGGCGCGTCTGGATCTCTCCCGAGGGGCAGCCCGTCGTCGCGATGATGCCCTCGTGGTGT 804 Query 41012 TCGGCGACGAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCTTGGTACGA 41070 || | ||| |||| ||||||||| || ||| | || | ||||| | ||| Sbjct 803 TCCTGCAGGAGCTCGATGTCCATGCGGGG---CTTGAAGTAGTA-CCCCTCGAGCGACGC 748 Query 41071 CCGAGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCTCGGCGAGGATCGTGAG 41130 | || ||| | |||||||||| ||||||| |||||||||||| ||||| | Sbjct 747 CTTCGACGACAGCCGGAACAGGTTGTGCATGCCGGTCGTGTTCTCGGCGAACATCGTCAT 688 Query 41131 GTGGGTGTACGCACCGCGACCGCTCACGTCGTAACGCTTCTGGTCCTCGGTGCCCCACTG 41190 ||| ||||||| ||| |||| ||||||| | | | | || |||||| | Sbjct 687 GTGCGTGTACGAACCCGCACCGGACACGTCG------TCCCCGCCACCGTCGCCCCAGCG 634 Query 41191 CAC-CCGCTCCTGATCGA--AGCGCGAGCCCGGAGCCATGTACGCCTCGATGCCGATGAT 41247 ||| | | || || ||| | | | || || | |||||||||||| |||||||||| Sbjct 633 CACACGGGTCTTGTCCGAGCGGTGGGTGCGGGGCGTGATGTACGCCTCGGTGCCGATGAT 574 Query 41248 CGGCTTGACCCCAGCGGCCGTAGCTGTGGTGAAGAAGTCGTGCGCACCGTGCAGGTTGCC 41307 ||||||||| || ||||| | || | | |||| ||| ||| ||| || |||||| Sbjct 573 CGGCTTGACGCCGCCGGCCTTGGCGGCCTTCCAGAACTCGAACGCGCCGAACATGTTGCC 514 Query 41308 GTGGTCGGTGACGGCGACTGCCGGGGAGCCCTGGCGGGCGACCTCGGCGACCATCTGCTT 41367 ||||||||| || || || || || ||||||| |||| ||| || || | | Sbjct 513 GTGGTCGGTCACCGCCACGGCGGGCATGCCCTGGGCGGCGGTCTCCGCCACGAGGTCGCC 454 Query 41368 CATCCGAGCGGCCCCGTCGAGGAGGCTGTACTCGGAGTGGTTGTGGAGGTGAACGAA 41424 | || ||||| |||||||| | ||||||| ||| ||| ||||| ||||| Sbjct 453 GAGTCGTGCGGCACCGTCGAGCATCGAGTACTCGCTGTGCACGTGCAGGTGGACGAA 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160285131157536