Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq63210 307 4e-79 seq63378 185 3e-42 seq63415 93.3 2e-14 >seq63210 Length=11074 Score = 307 bits (340), Expect = 4e-79 Identities = 770/1146 (67%), Gaps = 89/1146 (8%) Strand=Plus/Plus Query 54584 ACCGCCAGCATGCCGTTCGTGTATCCGCACGTCGCACTCATGCCCGACGCACATTTCGGC 54643 ||||| ||||||||||||||| |||||| | || |||||||| ||||| || ||||| Sbjct 6794 ACCGCTCGCATGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGC 6853 Query 54644 AAAGGCAGCTCGGTCGGCACAGTCATCCCCACCCAAGGCGCCGTCATCCCGGCCGCCGTC 54703 ||| | | || ||| | |||||||| |||| ||||| |||| ||||| |||||| Sbjct 6854 CTCGGCGCCACCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTC 6913 Query 54704 GGCGTCGACATCGGCTGCGGCATGATCGCAGCCCGCACCACCTACACCGCGCAAGACCTC 54763 ||||| ||||||||||||||||||||||| | ||| ||| | ||| ||| Sbjct 6914 GGCGTGGACATCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCACG----AAG----- 6964 Query 54764 GACGACCGCATGGCCGCCACCGGGCATGGGCTGGACACGCTGCGCGCCTCGATTGAATCC 54823 | ||||| || || || | ||| ||||| | ||| || ||| || Sbjct 6965 GGCGACC---TGCCCACCGACCTGCAGGGGCT-------CCGCGAGCA--GATCGAGCGG 7012 Query 54824 GCCATCCCCATGTCGGCCGGTGGATACAACAAACGGCTCGACCGGTACCCGTTCACCGCC 54883 |||||||| |||| || || | | ||| ||| || || || |||||| Sbjct 7013 GCCATCCCGCTGTCCGCGGGGGCGTCGAAC---CGGAA-GATCGTCGCC-----ACCGCC 7063 Query 54884 GCGC---GCATCGTCGAACTCGA--CCATCGCGCGTTCGAGCTGAACATCGACCT----G 54934 | || |||||| || ||||| | || ||| | | | | |||||| | Sbjct 7064 GAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGAGGCCGCCGG--CTTCGACCCCGCGG 7121 Query 54935 ACGCACTCGCCGAAATGGCGCGAACAGCTCGGAACACTCGGCGGCGGCAACCATTTCATT 54994 ||| | || || ||||| | |||||||| || ||||| |||||||| ||||| Sbjct 7122 GCGCGCACGGCGGG-TGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAACCACTTCATC 7180 Query 54995 GAACTGTGCCTCGACCAGCTCGACCGCGTCTGGCTGTTCCTGCATTCCGGGTCTCGTGGT 55054 || | | ||||||| ||| |||| ||||||||||||||||| |||||||| || || Sbjct 7181 GAGGTCTCCCTCGACGAGCAGGACCAGGTCTGGCTGTTCCTGCACTCCGGGTCACGCGGC 7240 Query 55055 GTCGGCAACAAGATCGCGCAGAAACACATCAAGGCCGCCCAGAACGC----CTGCG--AG 55108 ||||||||||||||||| ||| ||||||| | ||| |||| || ||| | Sbjct 7241 GTCGGCAACAAGATCGCCCAGCGGCACATCACGATCGCGAAGAAGGCGATGGAGCGGTGG 7300 Query 55109 GGCATCGAACTGCCGTCCAAGGATCTGGCGTACCTCACCGAAGGCACACCCCAATTCTAC 55168 | ||||| |||||| | || |||||||||||| ||| ||||| ||| | ||| || Sbjct 7301 TGGATCGAGCTGCCGGACCCCGACCTGGCGTACCTCGTCGAGGGCACGCCCGAGTTCGAC 7360 Query 55169 GAGTACCTACGTGAACTGCATTGGGCGCAACGATTCGCG-TACTCGAACCGCGCCGAAAT 55227 |||| | || |||| |||||||| | |||||| | ||| ||||||| || || Sbjct 7361 CGGTACATCGCCGAGCTGCGGTGGGCGCAGCACTTCGCGCTCCTC-AACCGCGAGGAGAT 7419 Query 55228 GATGGACCGGTTCGCGCGCGCA--TTCGCGAACTGGATCGGCACACCCGTCGACGACGTC 55285 |||||||||| ||| || ||| | ||||| | || | | | |||||||| || || Sbjct 7420 GATGGACCGGGTCGTCCG-GCAGCTGCGCGAGGT-CATGGACGCGCCCGTCGAGGAGCTC 7477 Query 55286 TCAGCGTTCATCGCCGAAACCATCAACACCCACCACAACTACACCGAGCAGGAAGAACAC 55345 |||| |||||| ||||||||||| ||| ||| || ||| Sbjct 7478 -GAGCG--------------AATCAACTGCCACCACAACTTCACGCAGCGCGAGACGCAC 7522 Query 55346 GGCGGCCGGTTCGTGTGGCTCACCCGCAAAGGCGCCATCGACGCACACGAAGGTGTGCGT 55405 | || || ||||||| | |||| || ||||| ||| | || | | || | Sbjct 7523 TGGGGGAAGTCCGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCC 7582 Query 55406 GGCCTCATCCCCGGCAGCATGGGCACCTGCTCATACGTCGTCACCGGCAAAGGCAAC--C 55463 ||||| |||||||| ||||||||| || ||||||||| ||| |||||| Sbjct 7583 GGCCTGATCCCCGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAAG 7642 Query 55464 CCGAAGGGTTGTGCTCAGCACCGCACGGCGCTGGCCGCCGCTACTCCCGCACGAAAGCCC 55523 ||| | | | | || | |||||||| || || || | ||||| || || || | Sbjct 7643 CCG-TCGCTCGAG-TCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCAC 7700 Query 55524 GGAAACTGTTCACCGCA-GACGATTT---GGCGGACCGTATGCGCGGCATCGAATACCGG 55579 || ||||| |||| ||||| | ||||| | ||| ||||||||| ||||| Sbjct 7701 GGCGGACGTTCA-CGCACGACGAGCTCCGGGCGGCC---ATGGTCGGCATCGAGTACCGC 7756 Query 55580 CACGGCGACGCGTGGATCGACGAAATCCCCGACGCGTACAAGCCGATCGACGTCGTCATG 55639 || |||||||| ||||||| ||||| | |||||||||||||||||| || ||| Sbjct 7757 GACACCGACGCGTTCCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATG 7816 Query 55640 CACGACGCCGCCGAGCTGGTCACCGTCGA--CG--CCGAGCTGCGGCAAATCCTGAACGT 55695 ||||||||||| || || ||||| || | ||||||||| ||| | ||||| Sbjct 7817 GCGGACGCCGCCGACCTCGT----GTCGATCCGGCACACGCTGCGGCAGATCGTCAACGT 7872 Query 55696 CAAGGG 55701 ||||| Sbjct 7873 GAAGGG 7878 >seq63378 Length=15302 Score = 185 bits (204), Expect = 3e-42 Identities = 251/350 (72%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 11658 GGCACAGCGTTCGGCCTCGACGAGGCAGCGAACACCGCCGCGTCGGCTGTGGCTGCCGGG 11717 || || || ||||| |||| ||| ||||| | || || || || || ||||| Sbjct 11691 GGGACCGCCTTCGGTCTCGGCGACGCAGCTGGCGTTGCATCGAACGCCGTCGCCGCCGGT 11750 Query 11718 ATCAAGCCCGGCCAAGACTTGACGCGTTACCTGTCGTTGACTGCGGACGCGGCGGCCATC 11777 |||||||||||||| | | ||| ||||| | | || || |||||||| ||||| Sbjct 11751 ATCAAGCCCGGCCAGGCGCTCACGAAGTACCTCAAGCTCACCGCCGACGCGGCCACCATC 11810 Query 11778 GCCGGCGTGAGCATGTCCGAAATGGGTTCGATCGTCAACAAGGTGCAGACCAGCGGCAAG 11837 || || || | ||| ||||| |||||| |||||||| | |||||||||||| Sbjct 11811 GCTGGTGTCTCGCTCGACGAGATGGGCTCGATCATCAACAAGACGACCACCAGCGGCAAG 11870 Query 11838 GCGTACACGATGGAGCTGACGCAGCTCGCCGACCGTGGCCTGCCCATTTTCCAATGGCTG 11897 | |||||| | || | |||||||| ||||| ||| | || || ||||| |||||| Sbjct 11871 GTCTACACGGACAACCTCAACCAGCTCGCTGACCGGGGCATCCCGATCTTCCAGTGGCTG 11930 Query 11898 CAAGAAGAGTACGGCGTCACCGGCGAAGAGCTGTCGAAGATGGTCGCCGACGGCAAGGTC 11957 || | |||||||||||| ||| ||| |||| ||| ||||||| | | ||||||||| Sbjct 11931 CAGAAGGAGTACGGCGTCTCCGCCGACAAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTC 11990 Query 11958 GATTCGGCGACGTTTCAGCGTGTCATCGAAAAGAACATCGGCGGCGCCGC 12007 || ||||| || || | |||||||| |||||||||||||||| || Sbjct 11991 GACTCGGCCACCTTCCGCAAGGTCATCGAGGAGAACATCGGCGGCGCGGC 12040 >seq63415 Length=16791 Score = 93.3 bits (102), Expect = 2e-14 Identities = 59/63 (94%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 794 GGTAGCTCAATTCGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 853 ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 5444 GGTGGCTCAATT-GGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502 Query 854 CCC 856 || Sbjct 5503 TCC 5505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196564882551264