Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028843.1 Length=75816 Score E Sequences producing significant alignments: (Bits) Value seq62752 165 4e-36 seq63545 93.3 2e-14 seq63415 84.2 1e-11 >seq62752 Length=6345 Score = 165 bits (182), Expect = 4e-36 Identities = 525/792 (66%), Gaps = 23/792 (3%) Strand=Plus/Minus Query 51016 CTTCGGCTTGCAGGCTTACATCGCTAAGCACC-TGATGGAAGCGTTTGAGCCGTTCTTTG 51074 ||||||| ||||||| | |||| | || || | | || |||| | ||||||||| | Sbjct 3002 CTTCGGCCTGCAGGCGTTCATC-CAGCGCTCCCTCGTCGAGGCGTGGGCGCCGTTCTTCG 2944 Query 51075 AGGCCGACGAGGACACGGTTGCCGCGCTGTACGAGGAACGCGTTACGCAGATTC-TCGGT 51133 |||||||||||| ||| |||| |||| ||| | | ||| | | | | | |||| Sbjct 2943 CCGCCGACGAGGACGAGGTCGCCGGCCTGTTCGA-GCAGGCGCTCCAGGGCTACTTCGGC 2885 Query 51134 CCTAACACGATTGGCTCCGGCCATATCCGCAAGCTGCACCGTAAGGGCTACTTGCCGCTC 51193 || ||| || ||| ||| ||| ||||| |||||||| ||||||| |||||||| Sbjct 2884 CCGAACCACATCGGCACCGACCACGTCCGCGCCCTGCACCGCCTGGGCTACCTGCCGCTC 2825 Query 51194 CGCTTCTGCGCGGTGCCGGAGGGGACGATGGTTCCTATCGGCGTGCCTAGCTTCACCGTG 51253 || ||||| |||| ||||| || | | ||| |||||||| | | | | || || Sbjct 2824 GAGATCCGCGCGCTGCCCGAGGGCACCCTCGCTCCGATCGGCGTCGCCACCCTGACGGTC 2765 Query 51254 GAGAACACGGACCCGGAGTTCTACTGGCTGACCAACTACGTGGAGACGGGCATTAGC-GC 51312 |||||||| | | ||||||| ||||||| | |||||| | ||||| ||| | | || Sbjct 2764 GAGAACACCGTCGACGAGTTCTTCTGGCTGCCGAACTACATCGAGAC-CGCACTGTCTGC 2706 Query 51313 GGGCGTGTGGCAGGCCAGCACTAGCGCGACCATCGCTAAGCAGTACCGGCGCGTGATGAT 51372 | | ||||| || || ||| || | || ||||||| | | ||| Sbjct 2705 GTCGATCTGGCACCCCTCGACGGTCGCCACGAAGGCGCTCGAGTACCGCGACCTCATGGA 2646 Query 51373 GGACGCGGCGCGGCTG-ACCGGCTCGGACCCGATTGGCGTTGACTGGCAGGTCCACGACT 51431 |||| ||| || | | ||||| | || || || | |||| | |||||||| Sbjct 2645 GGACTGGGC-CGCCCGCACCGGTGCAGATCCCGCGAGCATCGACTTCGCCGCCCACGACT 2587 Query 51432 TCTCTTACCG-GGGCATGTCCTCGCAT-GAGAGCGCGGCGGCGTCGGGCGCGGCTCACCT 51489 |||| | ||| ||||| || | |||| ||| || |||||| || || | ||||| Sbjct 2586 TCTCGTTCCGCGGGCA-GT-CGAGCATCGAGTCGGCCGCGGCGGGCGGTGCCGGACACCT 2529 Query 51490 GTTGAGCTTCACCGGGACGGACTCGCTGGTGTCGCTTGAGTGGATCGACCGCTACTACGG 51549 | | ||| ||| || |||||| || || || || | ||||||||||||||| Sbjct 2528 GCTCTCGTTCCTCGGCACCGACTCGATGCCCTCCCTCGACTTCATCGACCGCTACTACCC 2469 Query 51550 CGGCGACTAC--ATCGCTGGC-TCG---GTGCCCGCTACGGAGCACTCGGTGATGTGTAC 51603 ||||||| || | | |||| || || ||||| || |||||| || ||||| Sbjct 2468 CGGCGACAACGGCTGGGTGGCGGCGAGCGTCCCCGCGACCGAGCACAGCGTCATGTG--- 2412 Query 51604 CGGCATTGAGACGGTAGGCGAGCTTGAGACGTTCCAGCGGCTCTTAGCGCTGTACCCGGA 51663 || | | | | |||||||| ||||| ||| || | || | | ||||||| || Sbjct 2411 CGTCCGCGGCGCCGACGGCGAGCTGGAGACCTTCGCGCAGATCCTCGACGTGTACCC-GA 2353 Query 51664 CGGG-ATCGTTAGCGTCGTTAGCGACACCTTCGATCTGTGGCGCGTGCTGTGGGAGTACC 51722 |||| ||||| | || |||||| |||||| |||| || || ||| | Sbjct 2352 CGGGCATCGTCTCGGCGGTGAGCGACGGCTTCGACCTGTTCAAGGTCCTCACCGAGACGC 2293 Query 51723 TGCCGACGCTGCAAAAGCAGATCATGGCCCGTAACGGCAAGCTGGTGATCCGGCCTGACT 51782 | ||| ||| | | | |||| ||||| |||||||||| || ||||| || |||| Sbjct 2292 TCCCGCAGCTCAAGGACCGCATCACCGCCCGCGACGGCAAGCTCGTCATCCGTCCGGACT 2233 Query 51783 CGGGCGATCCGG 51794 ||||||| |||| Sbjct 2232 CGGGCGACCCGG 2221 >seq63545 Length=90175 Score = 93.3 bits (102), Expect = 2e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 55285 GGGCAACCTCACCGCTGATCCGGAACTGAGGTTCTTGGACTCTGGCGTGGCGGTCGCTCA 55344 ||||||||||||||| || ||||| ||| | | | | | || | || || || | Sbjct 74067 GGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCGAA 74008 Query 55345 GTTCTCGGTGGCGTCTACTCCCCGCAAGTTCAACAAGCAGACGAACGAGTGGGAGGACGG 55404 ||| | | ||||| || || |||| |||| || ||| ||||||||||| ||||||| Sbjct 74007 CTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGACGG 73948 Query 55405 CGAAACCGTGTTCCTCCGTACGTCGGTGTGGCGCGAGCTTGCAGAGGGCGCGGC 55458 ||| | ||||||||||| || |||||||||||| | || ||| || ||| Sbjct 73947 CGACGCGCTGTTCCTCCGTGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGC 73894 >seq63415 Length=16791 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 63766 CGGTAGCTCAACTGGTAGAGCAGTGGTCTCCAAAGCCACCGGTTGCAGGTTCGACTCCTG 63825 |||| |||||| ||||||||||| |||||||||| || | |||||||||||||| ||||| Sbjct 5443 CGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502 Query 63826 TCCG 63829 |||| Sbjct 5503 TCCG 5506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242298253589808