Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028846.1 Length=61081 Score E Sequences producing significant alignments: (Bits) Value seq63378 163 1e-35 >seq63378 Length=15302 Score = 163 bits (180), Expect = 1e-35 Identities = 264/380 (69%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 12719 ATCATGGACAACGCCCTCGCGGCGGTGAACCAAACAGCTTTCGGCCTCGACGAGGCAGCT 12778 |||||||||| |||||| | | || | || || ||||| |||| ||| |||||| Sbjct 11661 ATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCAGCT 11720 Query 12779 ACCACCGCTGCGTCTGCGGTGGCCGCCGGTATCAAGCCCGGCGAACAGTTGACGGGTTAC 12838 | || || || || ||||||||||||||||||||| | | | ||| ||| Sbjct 11721 GGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAGTAC 11780 Query 12839 CTCAAGGAGGTGGCCGACACCGCGGCAATCGCGGGCACCTCGATGGCCGACATGGGCTCG 12898 |||||| |||||| | || | ||||| || |||| | | ||| ||||||||| Sbjct 11781 CTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGCTCG 11840 Query 12899 ATCTTCAACAAGGTGCAGACGTCGGGCAAGGCGTTTACCGGCGACCTCAACATGCTGAGC 12958 ||| |||||||| | || ||||||| | || | | |||||||| ||| Sbjct 11841 ATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTCGCT 11900 Query 12959 GACCGCGGCCTGCCGATCTTCACGTGGCTGCAGAACGAGTACAAGGTCAGCGGCGAGGAA 13018 ||||| ||| | ||||||||| |||||||||||| |||||| ||| || ||| | Sbjct 11901 GACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGACAAG 11960 Query 13019 CTGTCGAAGATGGTTTCTGAGGGCAAGGTCGACGCCGCGACATTCCAGCGCGTGATTGCC 13078 || ||| |||||| || |||||||||||||| | || || |||| || || | Sbjct 11961 CTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTCATCGAG 12020 Query 13079 GAAAACATCGGCGGCGCAGC 13098 || |||||||||||||| || Sbjct 12021 GAGAACATCGGCGGCGCGGC 12040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195189922821024