Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028878.1 Length=76271 Score E Sequences producing significant alignments: (Bits) Value seq62752 161 5e-35 seq63539 107 9e-19 >seq62752 Length=6345 Score = 161 bits (178), Expect = 5e-35 Identities = 664/1037 (64%), Gaps = 44/1037 (4%) Strand=Plus/Minus Query 50412 TGCATGGGCTGGGGTTCCTGCCGCTGCGGTTCTGCGCGGTGCCTGAGGGGACGCTAGTGC 50471 |||| | ||||| | ||||||||| | || ||||| |||| ||||| || || | | Sbjct 2850 TGCACCGCCTGGGCTACCTGCCGCTCGAGATCCGCGCGCTGCCCGAGGGCACCCTCGCTC 2791 Query 50472 CTATCGGGGTGCCGTCGTTCACGGTGGAGAACACTCACGAGTCGTTCTACTGGCTGACCA 50531 | ||||| || | | | ||||| |||||||| ||| ||||| ||||||| | | Sbjct 2790 CGATCGGCGTCGCCACCCTGACGGTCGAGAACACCGTCGACGAGTTCTTCTGGCTGCCGA 2731 Query 50532 ACTACATCGAGACGGGCCTTAGCGCTGGGGTCTGGCAGGCCAGCACGTCCGCGACCATCG 50591 ||||||||||||| | || || | ||||||| || ||| ||| || | | Sbjct 2730 ACTACATCGAGACCGCACTGTCTGCGTCGATCTGGCACCCCTCGACGGTCGCCACGAAGG 2671 Query 50592 CTAAGCAGTACCGGCGGGTGCTTGAGG-CTGCGGCCTTGCGGACCGGCGCGGACCTGGCG 50650 | ||||||| | | |||| ||| |||| || ||||| || || | ||| Sbjct 2670 CGCTCGAGTACCGCGACCTCATGGAGGACTG-GGCCGCCCGCACCGGTGCAGATCCCGCG 2612 Query 50651 GGCGTCGACTG-GCAGTGCCATGACTTCTCTTACCG-GGGCATGTCCTCACAT-GAGAGC 50707 || |||||| || | ||| |||||||| | ||| ||||| ||| ||| ||| Sbjct 2611 AGCATCGACTTCGCCGC-CCACGACTTCTCGTTCCGCGGGCA-GTCGAG-CATCGAGTCG 2555 Query 50708 GCGGCGGCGTCGGGCGCGGCTCACCTGTTGAGCTTCACCGGTACGGACTCGCTGGTGTCG 50767 || |||||| || || | |||||| | ||| ||| || |||||| || || Sbjct 2554 GCCGCGGCGGGCGGTGCCGGACACCTGCTCTCGTTCCTCGGCACCGACTCGATGCCCTCC 2495 Query 50768 CTGGATTGGATCGACCGCTACTACGGCGGCGACTACG------TGGCGGGGTCGGTTCCG 50821 || || | ||||||||||||||| ||||||| ||| |||||| | || || Sbjct 2494 CTCGACTTCATCGACCGCTACTACCCCGGCGACAACGGCTGGGTGGCGGCGAGCGTCCCC 2435 Query 50822 GCTACCGAGCACTCGGTGATGTGTACCGGCATTGAGACGGTCGGGGAGCTTGAGACGTTC 50881 || ||||||||| || ||||| | || | | | ||| ||||| ||||| ||| Sbjct 2434 GCGACCGAGCACAGCGTCATGTGCGTCCGCGGCG---CCGACGGCGAGCTGGAGACCTTC 2378 Query 50882 AAGCGGCTGCTGGACCTGTACCCGTCCGGAATCGTCAGCGTCGTGTCCGACACTTTCGAT 50941 || | | || ||| |||||||| | || |||||| | ||| |||| ||||| Sbjct 2377 GCGCAGATCCTCGACGTGTACCCGACGGGCATCGTCTCGGCGGTGAGCGACGGCTTCGAC 2318 Query 50942 CTGTGGAAGGTGCTGACCACGTACCTGCCGACGCTGCATAAGCAGATCGTGGGCCGGGAC 51001 |||| ||||| || ||| | || ||| ||| | | | ||| | ||| ||| Sbjct 2317 CTGTTCAAGGTCCTCACCGAGACGCTCCCGCAGCTCAAGGACCGCATCACCGCCCGCGAC 2258 Query 51002 GGCAAGCTGGTCATTCGGCCTGACTCCGGCGATCCAGAGACCATCATTTGCGGCGACG-A 51060 |||||||| ||||| || || ||||| ||||| || | |||| | |||| || Sbjct 2257 GGCAAGCTCGTCATCCGTCCGGACTCGGGCGACCCGGTCGACATCGTCACCGGCACCGTG 2198 Query 51061 CAC-GAATCCTC-------------CGGCGTC---------CCCGGCGGGCATGGGCGTC 51097 ||| | ||| | | ||| | || | || | ||||||| Sbjct 2197 CACGGCGTCCCCGAGGCCGAGCTCACCGCGCCCGGTCGCAGCCACGAGGAGAAGGGCGTC 2138 Query 51098 CTAGGTCTGCTGTATGAGCATTTCGGCGGTAAGAAGAACGCTGGGGGGTTCATTGAGCTT 51157 | | || || | |||| |||||| | | |||| ||| |||| | ||| Sbjct 2137 GTCGAACTCCTCGACGAGCTCTTCGGCCACACGGTCAACGACCAGGGCTTCAAGGTGCTC 2078 Query 51158 GACCCGCACGTGGGTGTGATCTACGGCGACTCGATCACGCTTGAGCGCGCCGAGCGCATC 51217 |||| |||| | || || |||||||||||| ||||| || || || ||| || ||| Sbjct 2077 GACCAGCACATCGGCGTCATCTACGGCGACAGCATCACCCTCGACCGTGCCCGCCGGATC 2018 Query 51218 ACCGCGCGTATGGAGCGGCTGGGTTATGCGTCGTCCAACGTGGTGTTTGGGGTCGGGTCG 51277 || ||| | | | ||| || || |||| | ||| | || |||||||| Sbjct 2017 TACGAGCGCCTCGCCGCGAAGGGCTACTCGAGCGACAACATCGTGCTCGGCATCGGGTCG 1958 Query 51278 TTCACGTACCAGTACAACACCCGCGACACGTTCGGGTCCGCGATGAAAGCGACGTGGGCT 51337 | |||||||||||||| || || |||| |||| ||| |||| || || ||||| Sbjct 1957 TACACGTACCAGTACATGACGCGGGACAACCTCGGCAGCGCCGTGAAGGCCACCTGGGCA 1898 Query 51338 GAGGTCGACGGCAAGGGCTACAACCTGCTTAAGAATCCGGTGACCGACGACGGGACCAAG 51397 |||||||||| || | | || | | ||| | ||| ||||| | ||| |||| Sbjct 1897 CTGGTCGACGGCGAGCCCGTCGACATCCAGAAGGACCCGAAGACCGGCAGCGG---CAAG 1841 Query 51398 AGGTCCGCTACGGGCCG 51414 | | ||| | |||||| Sbjct 1840 AAGAGCGCCAAGGGCCG 1824 >seq63539 Length=51587 Score = 107 bits (118), Expect = 9e-19 Identities = 59/59 (100%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 62880 GTAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTG 62938 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 36825 GTAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTG 36883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243753123872128