Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_028878.1
Length=76271
Score E
Sequences producing significant alignments: (Bits) Value
seq62752 161 5e-35
seq63539 107 9e-19
>seq62752
Length=6345
Score = 161 bits (178), Expect = 5e-35
Identities = 664/1037 (64%), Gaps = 44/1037 (4%)
Strand=Plus/Minus
Query 50412 TGCATGGGCTGGGGTTCCTGCCGCTGCGGTTCTGCGCGGTGCCTGAGGGGACGCTAGTGC 50471
|||| | ||||| | ||||||||| | || ||||| |||| ||||| || || | |
Sbjct 2850 TGCACCGCCTGGGCTACCTGCCGCTCGAGATCCGCGCGCTGCCCGAGGGCACCCTCGCTC 2791
Query 50472 CTATCGGGGTGCCGTCGTTCACGGTGGAGAACACTCACGAGTCGTTCTACTGGCTGACCA 50531
| ||||| || | | | ||||| |||||||| ||| ||||| ||||||| | |
Sbjct 2790 CGATCGGCGTCGCCACCCTGACGGTCGAGAACACCGTCGACGAGTTCTTCTGGCTGCCGA 2731
Query 50532 ACTACATCGAGACGGGCCTTAGCGCTGGGGTCTGGCAGGCCAGCACGTCCGCGACCATCG 50591
||||||||||||| | || || | ||||||| || ||| ||| || | |
Sbjct 2730 ACTACATCGAGACCGCACTGTCTGCGTCGATCTGGCACCCCTCGACGGTCGCCACGAAGG 2671
Query 50592 CTAAGCAGTACCGGCGGGTGCTTGAGG-CTGCGGCCTTGCGGACCGGCGCGGACCTGGCG 50650
| ||||||| | | |||| ||| |||| || ||||| || || | |||
Sbjct 2670 CGCTCGAGTACCGCGACCTCATGGAGGACTG-GGCCGCCCGCACCGGTGCAGATCCCGCG 2612
Query 50651 GGCGTCGACTG-GCAGTGCCATGACTTCTCTTACCG-GGGCATGTCCTCACAT-GAGAGC 50707
|| |||||| || | ||| |||||||| | ||| ||||| ||| ||| |||
Sbjct 2611 AGCATCGACTTCGCCGC-CCACGACTTCTCGTTCCGCGGGCA-GTCGAG-CATCGAGTCG 2555
Query 50708 GCGGCGGCGTCGGGCGCGGCTCACCTGTTGAGCTTCACCGGTACGGACTCGCTGGTGTCG 50767
|| |||||| || || | |||||| | ||| ||| || |||||| || ||
Sbjct 2554 GCCGCGGCGGGCGGTGCCGGACACCTGCTCTCGTTCCTCGGCACCGACTCGATGCCCTCC 2495
Query 50768 CTGGATTGGATCGACCGCTACTACGGCGGCGACTACG------TGGCGGGGTCGGTTCCG 50821
|| || | ||||||||||||||| ||||||| ||| |||||| | || ||
Sbjct 2494 CTCGACTTCATCGACCGCTACTACCCCGGCGACAACGGCTGGGTGGCGGCGAGCGTCCCC 2435
Query 50822 GCTACCGAGCACTCGGTGATGTGTACCGGCATTGAGACGGTCGGGGAGCTTGAGACGTTC 50881
|| ||||||||| || ||||| | || | | | ||| ||||| ||||| |||
Sbjct 2434 GCGACCGAGCACAGCGTCATGTGCGTCCGCGGCG---CCGACGGCGAGCTGGAGACCTTC 2378
Query 50882 AAGCGGCTGCTGGACCTGTACCCGTCCGGAATCGTCAGCGTCGTGTCCGACACTTTCGAT 50941
|| | | || ||| |||||||| | || |||||| | ||| |||| |||||
Sbjct 2377 GCGCAGATCCTCGACGTGTACCCGACGGGCATCGTCTCGGCGGTGAGCGACGGCTTCGAC 2318
Query 50942 CTGTGGAAGGTGCTGACCACGTACCTGCCGACGCTGCATAAGCAGATCGTGGGCCGGGAC 51001
|||| ||||| || ||| | || ||| ||| | | | ||| | ||| |||
Sbjct 2317 CTGTTCAAGGTCCTCACCGAGACGCTCCCGCAGCTCAAGGACCGCATCACCGCCCGCGAC 2258
Query 51002 GGCAAGCTGGTCATTCGGCCTGACTCCGGCGATCCAGAGACCATCATTTGCGGCGACG-A 51060
|||||||| ||||| || || ||||| ||||| || | |||| | |||| ||
Sbjct 2257 GGCAAGCTCGTCATCCGTCCGGACTCGGGCGACCCGGTCGACATCGTCACCGGCACCGTG 2198
Query 51061 CAC-GAATCCTC-------------CGGCGTC---------CCCGGCGGGCATGGGCGTC 51097
||| | ||| | | ||| | || | || | |||||||
Sbjct 2197 CACGGCGTCCCCGAGGCCGAGCTCACCGCGCCCGGTCGCAGCCACGAGGAGAAGGGCGTC 2138
Query 51098 CTAGGTCTGCTGTATGAGCATTTCGGCGGTAAGAAGAACGCTGGGGGGTTCATTGAGCTT 51157
| | || || | |||| |||||| | | |||| ||| |||| | |||
Sbjct 2137 GTCGAACTCCTCGACGAGCTCTTCGGCCACACGGTCAACGACCAGGGCTTCAAGGTGCTC 2078
Query 51158 GACCCGCACGTGGGTGTGATCTACGGCGACTCGATCACGCTTGAGCGCGCCGAGCGCATC 51217
|||| |||| | || || |||||||||||| ||||| || || || ||| || |||
Sbjct 2077 GACCAGCACATCGGCGTCATCTACGGCGACAGCATCACCCTCGACCGTGCCCGCCGGATC 2018
Query 51218 ACCGCGCGTATGGAGCGGCTGGGTTATGCGTCGTCCAACGTGGTGTTTGGGGTCGGGTCG 51277
|| ||| | | | ||| || || |||| | ||| | || ||||||||
Sbjct 2017 TACGAGCGCCTCGCCGCGAAGGGCTACTCGAGCGACAACATCGTGCTCGGCATCGGGTCG 1958
Query 51278 TTCACGTACCAGTACAACACCCGCGACACGTTCGGGTCCGCGATGAAAGCGACGTGGGCT 51337
| |||||||||||||| || || |||| |||| ||| |||| || || |||||
Sbjct 1957 TACACGTACCAGTACATGACGCGGGACAACCTCGGCAGCGCCGTGAAGGCCACCTGGGCA 1898
Query 51338 GAGGTCGACGGCAAGGGCTACAACCTGCTTAAGAATCCGGTGACCGACGACGGGACCAAG 51397
|||||||||| || | | || | | ||| | ||| ||||| | ||| ||||
Sbjct 1897 CTGGTCGACGGCGAGCCCGTCGACATCCAGAAGGACCCGAAGACCGGCAGCGG---CAAG 1841
Query 51398 AGGTCCGCTACGGGCCG 51414
| | ||| | ||||||
Sbjct 1840 AAGAGCGCCAAGGGCCG 1824
>seq63539
Length=51587
Score = 107 bits (118), Expect = 9e-19
Identities = 59/59 (100%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 62880 GTAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTG 62938
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 36825 GTAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTG 36883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 243753123872128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |