Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq61823 1218 0.0 seq42391 86.0 2e-12 >seq61823 Length=3776 Score = 1218 bits (1350), Expect = 0.0 Identities = 1799/2522 (71%), Gaps = 67/2522 (3%) Strand=Plus/Minus Query 37837 ACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATC 37896 ||||| ||||||| |||| | ||||||||| | ||||||| ||||||| ||||| | Sbjct 2876 ACGTCCGGCGGCATGACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGGGCCAGC 2817 Query 37897 TTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGC 37956 |||| | |||| || || ||||| |||| || |||||||||||||||||||||||| Sbjct 2816 TTGTCGCGGGCGTCACCGACGGAGGTCAGCAGCGCGGCCATGTACTCGGCCGGGTAGTGC 2757 Query 37957 GTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTG 38016 | ||| |||||||| || | | | | || | ||||||||||| ||||||||||||||| Sbjct 2756 GCCTTGAGGTACGCGGTCCAGAACGAGACCACGCCGTACGCCGCCGAGTGCGCCTTGTTG 2697 Query 38017 AAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCCTCCGAG 38076 || ||||| ||| ||| || | || | |||||||| | | ||| ||||| ||||| Sbjct 2696 AACGCGTAGTCGGAGAACGGCAGCAGGATGTCCCACAGGGTCTTGATCGCAGCGGCCGAG 2637 Query 38077 TAGCCTCGCTCGCTCGCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGC 38136 ||||| || | ||||||| |||| || ||| |||| ||||| |||| | Sbjct 2636 TAGCCGTTGTCCTGCATGCCCTTCTCGAAGCCGGCGTACTGCTTGTCCAGC---TCGGAC 2580 Query 38137 TTCTTCTT---GCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCC 38193 |||||||| |||||||||||| ||||||| ||| ||||| ||||||| | ||||||| Sbjct 2579 TTCTTCTTCTTGCCCATGGCGCGGCGGAGGATGTCCGCCTGGCCGAGGGAGAACCCGGCG 2520 Query 38194 AGGATCTGCGCC---GCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGG 38250 | ||||||| ||| | |||||||||||||||||||| || ||| |||||| | Sbjct 2519 ACCTTCTGCGCGATGGCCATG---ACCTGCTCCTGGTAGATGATCAGGCCGTAGGTCGTG 2463 Query 38251 TCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGA 38310 | | ||| || || ||||| || | ||| |||||||||||||||||| ||||| Sbjct 2462 CCGATGATGTCCTTGAGGGGCTCTTCGAGCTCCGGGTGGATCGGCGTGATCGGCTGCTCG 2403 Query 38311 CCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTAC 38370 ||||||||||| || |||||||||||||||||| | |||||||| |||||||||||| Sbjct 2402 CCGTTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCGCACCCATCGGCCCCGGACGGTAC 2343 Query 38371 AGCGCGACGACGGCCGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGAAGCAGGGAG 38430 || |||| || || |||||||||||||| | ||||||||||| |||||| |||||| | Sbjct 2342 AGGGCGATGAGCGCGGAGATGTCCTCGAAGTTGTCCGGCTTCATCAGGCGGAGCAGGCCG 2283 Query 38431 CGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGGGTGTCGCCCCTGGCCAGCAGCTCG 38490 ||||||| |||||||||||||||||| || ||||||||||| | ||| ||| || Sbjct 2282 CGCATCGGGCCGCCGTCGAGCTGGAACACGCCCAGGGTGTCGCCGCGCTGCAGGAGCGCG 2223 Query 38491 TAGGTTGCCGGGTCGTCCAGCGGGATGTTCTCGATGTCGACGT-GCTCACCACGGTTGCG 38549 || | | ||||| || ||| ||| |||||| ||||| || | || || ||||| || Sbjct 2222 TACGCCTCGGGGTCCTCGAGCCCCATGGTCTCGAGGTCGAGGTCGATCCCC-CGGTT-CG 2165 Query 38550 GCG-GATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCA 38608 | |||||| |||| ||||| | ||||||||||||||||||||||| |||||||||| Sbjct 2164 TCTTGATGTTGTCGAGGGCGTCACTGATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCA 2105 Query 38609 TCTTCAGCAGGCCCAGGGCCTC-GCAGCTCGGGTAGTCGAACTGCGTGATCGTCACGCCG 38667 |||| | |||||| || | ||| || || |||||||||||||||||||| || |||| Sbjct 2104 TCTTGATCAGGCCGAGCGACTCCGCTGC-CGGGTAGTCGAACTGCGTGACGATCTGGCCG 2046 Query 38668 TCCGCAGGCCGCACCCACGTAGGGATGTGGTCGACCAGCGGCTCGTCAGACATGATCACA 38727 ||| |||| | | |||||| ||||| |||||| ||| |||||||| || Sbjct 2045 TCCTGCTCCCGCTTCATGATCGGGATGATGTCGATCAGCGGGTCGCTCGACATGATGACG 1986 Query 38728 CCGGCTGCGTGCACGCCCATCTGCCGGACGAGTCCTTCGAGGCCACGCGCGAGGTCGATG 38787 ||||| |||||||| ||| ||| || || || |||||||| ||||| ||||| Sbjct 1985 CCGGCCGCGTGCACACCCCACTGGCGCTTCAGCCCCTCGAGGCCGAGCGCGGTGTCGAAC 1926 Query 38788 ACCTCCTTCGCGTCCTTGTCGTTCTCGTACAGCGCCCGGATCTCGCCCGCCTCGTCGTAG 38847 ||| |||||| || |||| ||||| | || |||| ||| | || || | | || Sbjct 1925 ACCGTCTTCGCCTCGGGGTCGGTCTCGACGACCGTGCGGACGTCGACGGCTTCCTTGAAG 1866 Query 38848 CGCGGGTGCTCCGGGTTGGTGATGCCCTCCAGGGGCATCGACGCGCCCATCACGTCGGCC 38907 || ||||| ||| || | ||| || || || || | |||||||||| | | Sbjct 1865 CGGGGGTGGTCCTTGTCGAAGATCCCAGTGAGCGGGATGTCCTTGCCCATCACGGGCGGC 1806 Query 38908 GGGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCG 38967 || ||||||||| ||||||||||| | ||| || | | || ||||| | | | Sbjct 1805 GGCATCGCCTTGGTGAGCTTCTCGCCCATGCCGAACGGGAAGCCGAGGACGCGCGAGGAG 1746 Query 38968 TCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCA 39027 ||||||| ||| | |||||||||| |||||||| ||||||| || || || Sbjct 1745 TCCTTCAGCGCCTGCTTCGCCTTGATCGTGCCGTACGTGACGATCTGCGCCACGCGCTCC 1686 Query 39028 CTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCG 39087 ||||||||||||||||||||| |||| | || || ||||| ||||| ||||||||| Sbjct 1685 GACCCGTACTTCTCGGTGACGTACTTGATCGCCTCACCGCGGCGCCGGTCGTCGAAGTCG 1626 Query 39088 ATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCG 39147 | ||| | ||||||||| ||||| || || ||||| ||||||||||||||||| |||||| Sbjct 1625 ACGTCGAAGTCGGGCATCGAGACGCGGTCCGGGTTGAGGAACCGCTCGAAGATCAGCCCG 1566 Query 39148 TGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCA 39207 || |||| ||||| ||||||||||| | | |||||||| ||| ||| || || | Sbjct 1565 TGCCGGATCGGGTCGAGGTCGGTGATGCGCATCGCGTACGCCACCATCGAACCGGCACCG 1506 Query 39208 GAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCG 39267 || || || || |||||||| | | |||||| | ||||| |||| ||||||||||||| Sbjct 1505 GAACCACGACCCGGGCCGACACGGATGCCGTTGTTCTTCGACCAGTTGATGAAGTCGGCG 1446 Query 39268 ACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGACC 39327 || || |||||||| |||||| |||||||||||||| || | ||||||| ||| | Sbjct 1445 ACCACCAGGAAGTAGCCCGGGAAGCCCATCTGGTTGATGATCCGGGTCTCGTAGTCGGC- 1387 Query 39328 TGCGTGCGGTGCTCGTC-GTCGT--ACCCACCGGGGAAGCGGCGGTCCATGCCGAT---G 39381 ||| | ||| | || | ||| || ||||| ||||| || | || | | Sbjct 1386 -GCGCTC-CTGCACCTCGGGCGTGATGCCGTCGGGGTAGCGGTACTCGAGCCCCTTCGCG 1329 Query 39382 AGCACCTGCTCGCGGAAGAACTGGCCCTCCGTCTGGCCCTCGGGCACCGGGAAGCGGGGC 39441 | | ||| |||| | |||| ||| |||| ||| ||||||||||||| ||| Sbjct 1328 ATCTCCTTCTCGAACCACGACTG---CTCGGTCTCGCCGGCGGGCACCGGGAACTTCGGC 1272 Query 39442 ATGAGGTT---CTGGAACTCGAACATGCCGGTCGTGTCGACCCGGTCGGCGATCTCCAGC 39498 ||| ||| | | |||||| | | || | ||| |||||||| |||| Sbjct 1271 ATGTAGTTGGCCGTGGTGTCGAACTCGAC------GTTGCACCGCTCGGCGATGAGCAGC 1218 Query 39499 GTGGT-CCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGATGGCTGCCATCTCGGCGGC 39557 ||| | |||| || | | | | | ||| | || | ||||| || | Sbjct 1217 GTGTTGTCGCAGGCC-----TCGGGGTTGTCGCGGAAGAGGTGCC--GCATCTGCGCCGG 1165 Query 39558 CGACTTCAGGTAGTACCCCTCGCCCTCGAACCGGAACCGATCCTCCTGGTAGAGGGTCGA 39617 || |||||||||| || | ||| | |||||| ||| || | | | || || ||||| Sbjct 1164 CGTCTTCAGGTAGAACTCGTCGGCGTCGAACTTGAAGCGGTTCGGGTCGTTCAGCGTCGA 1105 Query 39618 GCCGGTCTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTG 39677 |||| ||| ||||| || || || |||| | | || || | | | |||||||||| Sbjct 1104 CCCGGACTGCACGCAGAGGAGCGCCGCGTGCGACTTGGCGTCGTGGGCGTGCGTGTAGTG 1045 Query 39678 CGAGTCGTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTCGTC 39737 |||||| ||| | ||| | | || ||||| || | |||||| |||||| | Sbjct 1044 GAGGTCGTTCGTGCCGACCAGCGGGATGTCGAGGTCCTTCGCCAGGCGGATCAGGTCGCC 985 Query 39738 GCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTT 39797 || || ||||||||||| || ||||||||||| | ||| |||| |||||||||| Sbjct 984 CATGATCCGGCGCTCGATCTCGAGCCCGTGGTCCATCACCTCGGCGAAGTAGTTGTCCTT 925 Query 39798 CCCGAAGATCTCCCGCCACTTCGCGGCCTCGGCGACGGCCTCCTCGTACTGGCCGAGGTT 39857 |||||||| || || | | ||| || | || |||||| ||||||||||||||| Sbjct 924 GCCGAAGATGTCGCGGTAGTCCGCCGCTGCCTTGAGGGCCTCGTCGTACTGGCCGAGGCG 865 Query 39858 GAGCCGGGTC---ATCACTGCGCCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGC 39914 || || ||| ||| || || |||||| ||||| || |||| | |||||| Sbjct 864 CAGGCGCGTCTGGATCTCT---CCCGAGGGGCAGCCCGTCGTCGCGATGATGCCCTCGTG 808 Query 39915 GTGCTCCGCCACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCGCTGT 39973 ||| ||| || |||||| ||||||||| || ||| | || | |||||| Sbjct 807 GTGTTCCTGCAGGAGCTCGATGTCCATGCGGGG---CTTGAAGTAGTA-CCCCTCGAGCG 752 Query 39974 ACGAGCGAGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGTGGCGAGCATGG 40033 ||| || || ||| |||||||||||||| ||||||| ||||| ||||| ||| | Sbjct 751 ACGCCTTCGACGACAGCCGGAACAGGTTGTGCATGCCGGTCGTGTTCTCGGCGAACATCG 692 Query 40034 TCATGTGGGTGTAGGCACCCCGACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCCC 40093 ||||||| ||||| | |||| |||| |||||||| || | | | | | ||||| Sbjct 691 TCATGTGCGTGTACGAACCCGCACCGGACACGTCGTCCC----CGCCACCGTC--GCCCC 638 Query 40094 ACTGGACCCGCTCCTGGTCGGAACGGTG---CCCCGGTGCGACGTACGCCTCGATCCCGA 40150 | | || || || ||| || ||||| | || | || |||||||||| | |||| Sbjct 637 AGCGCACACGGGTCTTGTCCGAGCGGTGGGTGCGGGGCGTGATGTACGCCTCGGTGCCGA 578 Query 40151 TGATGGGCTTGACCCCAGCGGCCTGCCCCTGCGTGAAGAAGTCGTACGCACCATGCAGGT 40210 |||| |||||||| || |||||| | | | |||| ||| |||| || || || Sbjct 577 TGATCGGCTTGACGCCGCCGGCCTTGGCGGCCTTCCAGAACTCGAACGCGCCGAACATGT 518 Query 40211 TGCCGTGGTCGGTCATCGCGAGGGCTCTCATGCCCTGCGCCTTGGCCTCGGCGAACATGT 40270 ||||||||||||||| ||| | ||| ||||||||| || || ||| || | | || Sbjct 517 TGCCGTGGTCGGTCACCGCCACGGCGGGCATGCCCTGGGCGGCGGTCTCCGCCACGAGGT 458 Query 40271 CCTTCAGCCGAGCCGCCCCGTCGAGCAGGCTGTACTCGGAGTGGACATGCAGGTGAACGA 40330 | || || || || |||||||||| ||||||| ||| || |||||||| |||| Sbjct 457 CGCCGAGTCGTGCGGCACCGTCGAGCATCGAGTACTCGCTGTGCACGTGCAGGTGGACGA 398 Query 40331 AG 40332 || Sbjct 397 AG 396 >seq42391 Length=23142 Score = 86.0 bits (94), Expect = 2e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 39005 TCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGC 39064 |||||| ||| ||| | ||| | ||||||||||||| ||||||| |||| || || Sbjct 3203 TCGCGACCTGGGCGGCGTTGAACCGGCCGTACTTCTCGTAGACGTACTGGATGACCTCTT 3144 Query 39065 CACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCA 39124 | ||||| | |||||||||| ||| | ||||||| | | ||| | || Sbjct 3143 CGCGGCGGTCGGAGTCGAAGTCGACGTCGATGTCGGGCTCCTCGTCGCGCATCGCCGACA 3084 Query 39125 GGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAG 39179 ||||||||||||| ||||||| |||||| ||||| |||||||| |||| Sbjct 3083 GGAACCGCTCGAACGGCAGCCCGTACCGGATGGAGTCCACCGCGGTGATCTCGAG 3029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159594453711648