Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_028936.1
Length=59052
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 313 9e-81
seq63378 187 9e-43
>seq63210
Length=11074
Score = 313 bits (346), Expect = 9e-81
Identities = 759/1133 (67%), Gaps = 51/1133 (5%)
Strand=Plus/Plus
Query 52714 CAGGCGCAGCA-GACGGCTGACATGCCGTTCGTGTACCCGCACGTGGCGCTCATGCCTGA 52772
||||| | ||| ||| ||| |||||||||||||| ||||||| |||| |||||||| ||
Sbjct 6782 CAGGCCC-GCACGACCGCTCGCATGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGA 6840
Query 52773 CGCGCATTTCGGGAAGGGCAGCAGCGTCGGCACGGTGATCCCGACCGAGGGTGNNNNNNN 52832
||| || |||| ||| || ||| ||| |||| ||||||||| || |
Sbjct 6841 CGCCCACCTCGGCCTCGGCGCCACCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCAT 6900
Query 52833 NNNNNNNNCGGTGGGTGTGGACATTGGTTGCGGCATGATCGCCGCCCGCACGAGCTACAC 52892
| || || |||||||| || |||||||||||||| | ||| || | |||
Sbjct 6901 GCCGGCGGCCGTCGGCGTGGACATCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCAC 6960
Query 52893 GGCGACGGACTTGGAGGGCCGCGAGCTTTCGGCGCTGCGCGAGTCGATCGAGTCGGCGAT 52952
| | ||| || | ||| || || ||| |||||| ||||||| ||| ||
Sbjct 6961 GAAGGGCGACCTGCC---CACCGACCTGCAGGGGCTCCGCGAGCAGATCGAGCGGGCCAT 7017
Query 52953 CCCGATGAGCGCCGGGGGCTACAACAAGTCGCTGGACCGTTTCGACTTCACCAGGTCGCG 53012
|||| || ||| |||| | ||| || || ||| | || | || | | ||
Sbjct 7018 CCCGCTGTCCGCGGGGGCGTCGAAC----CGGAAGATCGTCGCCAC--CGCCGAGCCCCG 7071
Query 53013 CCTGGACTGGCTGCAGTTGATCGCT-ACCCGGTTCGGTGTCGACCT----GTCGCACTCG 53067
| | | ||| || ||| || | | | ||| |||||| | ||| | ||
Sbjct 7072 CATCGCAGAGCTCGAGACGATGGCGGAGGCCGC-CGGCTTCGACCCCGCGGGCGCGCACG 7130
Query 53068 CCGAAGTGGCGTGAGCAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTGT 53127
|| |||||| | |||||||| |||||||| ||||| |||||||||||| | |
Sbjct 7131 GCGG-GTGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCC 7189
Query 53128 GTCGACCACCTTGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAAC 53187
||||| | | |||| || ||| |||||||||||||||| || || || || ||||||
Sbjct 7190 CTCGACGAGCAGGACCAGGTCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAAC 7249
Query 53188 AAGATCGCGCAGCGGCATATCGCTGCGGCGCAG--GGCTACTGCCACAACAACGGCCTGC 53245
|||||||| |||||||| ||| | ||| || ||| | || | || |
Sbjct 7250 AAGATCGCCCAGCGGCACATCACGATCGCGAAGAAGGCGA-TGGAGCGGTGGTGGATCG- 7307
Query 53246 AGGTGCCTCACCCTGATCTGGCGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACA 53305
|| |||| |||| || |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 7308 AGCTGCCGGACCCCGACCTGGCGTACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACA 7367
Query 53306 TCGTCGAGTTGCGGTGGGCGCAGCGGTTCGCGTACCTGAACCGTGCCGAGATGCTGGATC 53365
||| |||| ||||||||||||||| |||||| ||| ||||| | |||||| |||| |
Sbjct 7368 TCGCCGAGCTGCGGTGGGCGCAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACC 7427
Query 53366 GTTTCGCGCGGGCG-TTCGCGCACTGGATGGGTTACCCGCCGGGTGACGCCGATTCGCTG 53424
| ||| ||| | | |||| | |||| || |||| || ||| |
Sbjct 7428 GGGTCGTCCGGCAGCTGCGCG-AGGTCATGG---ACGCGCC------CGTCGA------G 7471
Query 53425 CTGGTGGAGACGATCAACACTCATCACAACTACACGCAGAAGGAAACTCAC-GGCGGCCG 53483
| | ||| |||||| || ||||||| ||||||| || || ||| || || |
Sbjct 7472 GAGCTCGAGCGAATCAACTGCCACCACAACTTCACGCAGCGCGAGACGCACTGGGGGAAG 7531
Query 53484 TGAGGTGTGGTTGACCCGCAAGGGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGAT 53543
| |||||| || |||| ||||| |||||| | ||||| |||| | || |||||
Sbjct 7532 T-CCGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGAT 7590
Query 53544 TCCCGGCAGCATGGGCACCCGCTCGTATGTCGTCACCGGCAAGGGCAATCCCGAGGCGTT 53603
||||| ||||||||| ||||| |||||| ||| ||||| | || |||
Sbjct 7591 CCCCGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAA---CAAGCCGTC 7647
Query 53604 GTGC---TCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCCCGCAACAAGGCCCGCAAGAT 53660
| | ||| ||||||||||||| || || | || ||| || ||| || ||
Sbjct 7648 GCTCGAGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGAC 7707
Query 53661 GTTCACCGTCGAGGA--TCTGGACGCCCGCATGGCTGGCATTGAGTATCGGCGCGGCGAG 53718
|||||| ||| || || || || | ||||| ||||| ||||| || | |||
Sbjct 7708 GTTCACGCACGACGAGCTCCGGGCGGC--CATGGTCGGCATCGAGTACCGCGACACCGAC 7765
Query 53719 GCGTGGGTCGACGAGATTCCCGACGCCTACAAGCCGATTGACGTCGTGATGGCCGACGCG 53778
|||| |||||||||| || | || ||||||||||| ||| |||||||| |||||
Sbjct 7766 GCGTTCCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCC 7825
Query 53779 GAGAGCCTCGTATCGGTTGACGTCGAGCTGCGCCAGGTGCTCAACGTGAAGGG 53831
| |||||| ||| | | |||||| ||| | |||||||||||||
Sbjct 7826 GCCGACCTCGTGTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 7878
>seq63378
Length=15302
Score = 187 bits (206), Expect = 9e-43
Identities = 308/443 (70%), Gaps = 6/443 (1%)
Strand=Plus/Plus
Query 11792 ATCGACGACGCCAAGTTCAAGCTGCAAGGGCTCGGTAACACCACCGAGCAAGTCGAGTCG 11851
||||||||||| ||| |||||| || ||| | | || || | ||| ||||
Sbjct 11601 ATCGACGACGCGAAGGGCAAGCTCGCCGGCCTCAAGACGTCGACGAAGGACATCGCGTCG 11660
Query 11852 ATCATGCAGAACGCCCTTGTGGCCGTGAAGGGTACAGCGTTCGGGCTCGACGAGGCCGCC 11911
|||||| | | |||||| | |||| || || || ||||| |||| ||| || ||
Sbjct 11661 ATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCAGCT 11720
Query 11912 ACCACGGCCGCATC---CGCGGTGGCCGCTGGCATCAAGCCCGGCGAGCAGTTGGAGCGA 11968
| | ||||| ||| || ||||| || |||||||||||| || | | |
Sbjct 11721 GGC---GTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAG 11777
Query 11969 TACCTCAAGCTCGTCGGCGACACGGCCGCGATCGCAGGGACGTCGCTGGCCGACATGGGC 12028
|||||||||||| || |||| ||||| | ||||| || ||||| | ||| ||||||
Sbjct 11778 TACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGC 11837
Query 12029 GCGATCTTCAACAAGGTGCAGACGTCAGGTAAGGCGTTCACCGGAGACCTCAACATGCTC 12088
||||| |||||||| | || || |||| | ||| | |||||||| ||||
Sbjct 11838 TCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTC 11897
Query 12089 TCCGACCGGGGCCTGCCGATCTTTCAGTGGCTCCAAGAGGAGTACCGGGTCAGCGGCGAG 12148
| ||||||||| | |||||||| |||||||| || |||||||| | ||| || |||
Sbjct 11898 GCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGAC 11957
Query 12149 GAACTGTCGAAGATGGTCTCGGAGGGCAAGGTTGACGCCGAGACTTTCCAGAAGGTCGTT 12208
| || ||| |||||||||| |||||||||| ||| | | || |||| |||||| |
Sbjct 11958 AAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTCATC 12017
Query 12209 GCCGAGCGGATCGGCGGCGCCGC 12231
| ||| ||||||||||| ||
Sbjct 12018 GAGGAGAACATCGGCGGCGCGGC 12040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 188702031442752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |