Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq63210 313 9e-81 seq63378 187 9e-43 >seq63210 Length=11074 Score = 313 bits (346), Expect = 9e-81 Identities = 759/1133 (67%), Gaps = 51/1133 (5%) Strand=Plus/Plus Query 52714 CAGGCGCAGCA-GACGGCTGACATGCCGTTCGTGTACCCGCACGTGGCGCTCATGCCTGA 52772 ||||| | ||| ||| ||| |||||||||||||| ||||||| |||| |||||||| || Sbjct 6782 CAGGCCC-GCACGACCGCTCGCATGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGA 6840 Query 52773 CGCGCATTTCGGGAAGGGCAGCAGCGTCGGCACGGTGATCCCGACCGAGGGTGNNNNNNN 52832 ||| || |||| ||| || ||| ||| |||| ||||||||| || | Sbjct 6841 CGCCCACCTCGGCCTCGGCGCCACCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCAT 6900 Query 52833 NNNNNNNNCGGTGGGTGTGGACATTGGTTGCGGCATGATCGCCGCCCGCACGAGCTACAC 52892 | || || |||||||| || |||||||||||||| | ||| || | ||| Sbjct 6901 GCCGGCGGCCGTCGGCGTGGACATCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCAC 6960 Query 52893 GGCGACGGACTTGGAGGGCCGCGAGCTTTCGGCGCTGCGCGAGTCGATCGAGTCGGCGAT 52952 | | ||| || | ||| || || ||| |||||| ||||||| ||| || Sbjct 6961 GAAGGGCGACCTGCC---CACCGACCTGCAGGGGCTCCGCGAGCAGATCGAGCGGGCCAT 7017 Query 52953 CCCGATGAGCGCCGGGGGCTACAACAAGTCGCTGGACCGTTTCGACTTCACCAGGTCGCG 53012 |||| || ||| |||| | ||| || || ||| | || | || | | || Sbjct 7018 CCCGCTGTCCGCGGGGGCGTCGAAC----CGGAAGATCGTCGCCAC--CGCCGAGCCCCG 7071 Query 53013 CCTGGACTGGCTGCAGTTGATCGCT-ACCCGGTTCGGTGTCGACCT----GTCGCACTCG 53067 | | | ||| || ||| || | | | ||| |||||| | ||| | || Sbjct 7072 CATCGCAGAGCTCGAGACGATGGCGGAGGCCGC-CGGCTTCGACCCCGCGGGCGCGCACG 7130 Query 53068 CCGAAGTGGCGTGAGCAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTGT 53127 || |||||| | |||||||| |||||||| ||||| |||||||||||| | | Sbjct 7131 GCGG-GTGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCC 7189 Query 53128 GTCGACCACCTTGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAAC 53187 ||||| | | |||| || ||| |||||||||||||||| || || || || |||||| Sbjct 7190 CTCGACGAGCAGGACCAGGTCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAAC 7249 Query 53188 AAGATCGCGCAGCGGCATATCGCTGCGGCGCAG--GGCTACTGCCACAACAACGGCCTGC 53245 |||||||| |||||||| ||| | ||| || ||| | || | || | Sbjct 7250 AAGATCGCCCAGCGGCACATCACGATCGCGAAGAAGGCGA-TGGAGCGGTGGTGGATCG- 7307 Query 53246 AGGTGCCTCACCCTGATCTGGCGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACA 53305 || |||| |||| || |||||||| ||||||||||||||||||||||||||| ||||| Sbjct 7308 AGCTGCCGGACCCCGACCTGGCGTACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACA 7367 Query 53306 TCGTCGAGTTGCGGTGGGCGCAGCGGTTCGCGTACCTGAACCGTGCCGAGATGCTGGATC 53365 ||| |||| ||||||||||||||| |||||| ||| ||||| | |||||| |||| | Sbjct 7368 TCGCCGAGCTGCGGTGGGCGCAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACC 7427 Query 53366 GTTTCGCGCGGGCG-TTCGCGCACTGGATGGGTTACCCGCCGGGTGACGCCGATTCGCTG 53424 | ||| ||| | | |||| | |||| || |||| || ||| | Sbjct 7428 GGGTCGTCCGGCAGCTGCGCG-AGGTCATGG---ACGCGCC------CGTCGA------G 7471 Query 53425 CTGGTGGAGACGATCAACACTCATCACAACTACACGCAGAAGGAAACTCAC-GGCGGCCG 53483 | | ||| |||||| || ||||||| ||||||| || || ||| || || | Sbjct 7472 GAGCTCGAGCGAATCAACTGCCACCACAACTTCACGCAGCGCGAGACGCACTGGGGGAAG 7531 Query 53484 TGAGGTGTGGTTGACCCGCAAGGGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGAT 53543 | |||||| || |||| ||||| |||||| | ||||| |||| | || ||||| Sbjct 7532 T-CCGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGAT 7590 Query 53544 TCCCGGCAGCATGGGCACCCGCTCGTATGTCGTCACCGGCAAGGGCAATCCCGAGGCGTT 53603 ||||| ||||||||| ||||| |||||| ||| ||||| | || ||| Sbjct 7591 CCCCGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAA---CAAGCCGTC 7647 Query 53604 GTGC---TCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCCCGCAACAAGGCCCGCAAGAT 53660 | | ||| ||||||||||||| || || | || ||| || ||| || || Sbjct 7648 GCTCGAGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGAC 7707 Query 53661 GTTCACCGTCGAGGA--TCTGGACGCCCGCATGGCTGGCATTGAGTATCGGCGCGGCGAG 53718 |||||| ||| || || || || | ||||| ||||| ||||| || | ||| Sbjct 7708 GTTCACGCACGACGAGCTCCGGGCGGC--CATGGTCGGCATCGAGTACCGCGACACCGAC 7765 Query 53719 GCGTGGGTCGACGAGATTCCCGACGCCTACAAGCCGATTGACGTCGTGATGGCCGACGCG 53778 |||| |||||||||| || | || ||||||||||| ||| |||||||| ||||| Sbjct 7766 GCGTTCCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCC 7825 Query 53779 GAGAGCCTCGTATCGGTTGACGTCGAGCTGCGCCAGGTGCTCAACGTGAAGGG 53831 | |||||| ||| | | |||||| ||| | ||||||||||||| Sbjct 7826 GCCGACCTCGTGTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 7878 >seq63378 Length=15302 Score = 187 bits (206), Expect = 9e-43 Identities = 308/443 (70%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 11792 ATCGACGACGCCAAGTTCAAGCTGCAAGGGCTCGGTAACACCACCGAGCAAGTCGAGTCG 11851 ||||||||||| ||| |||||| || ||| | | || || | ||| |||| Sbjct 11601 ATCGACGACGCGAAGGGCAAGCTCGCCGGCCTCAAGACGTCGACGAAGGACATCGCGTCG 11660 Query 11852 ATCATGCAGAACGCCCTTGTGGCCGTGAAGGGTACAGCGTTCGGGCTCGACGAGGCCGCC 11911 |||||| | | |||||| | |||| || || || ||||| |||| ||| || || Sbjct 11661 ATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCAGCT 11720 Query 11912 ACCACGGCCGCATC---CGCGGTGGCCGCTGGCATCAAGCCCGGCGAGCAGTTGGAGCGA 11968 | | ||||| ||| || ||||| || |||||||||||| || | | | Sbjct 11721 GGC---GTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAG 11777 Query 11969 TACCTCAAGCTCGTCGGCGACACGGCCGCGATCGCAGGGACGTCGCTGGCCGACATGGGC 12028 |||||||||||| || |||| ||||| | ||||| || ||||| | ||| |||||| Sbjct 11778 TACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGC 11837 Query 12029 GCGATCTTCAACAAGGTGCAGACGTCAGGTAAGGCGTTCACCGGAGACCTCAACATGCTC 12088 ||||| |||||||| | || || |||| | ||| | |||||||| |||| Sbjct 11838 TCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTC 11897 Query 12089 TCCGACCGGGGCCTGCCGATCTTTCAGTGGCTCCAAGAGGAGTACCGGGTCAGCGGCGAG 12148 | ||||||||| | |||||||| |||||||| || |||||||| | ||| || ||| Sbjct 11898 GCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGAC 11957 Query 12149 GAACTGTCGAAGATGGTCTCGGAGGGCAAGGTTGACGCCGAGACTTTCCAGAAGGTCGTT 12208 | || ||| |||||||||| |||||||||| ||| | | || |||| |||||| | Sbjct 11958 AAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTCATC 12017 Query 12209 GCCGAGCGGATCGGCGGCGCCGC 12231 | ||| ||||||||||| || Sbjct 12018 GAGGAGAACATCGGCGGCGCGGC 12040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188702031442752