Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq63531 104 3e-17 >seq63531 Length=42858 Score = 104 bits (114), Expect = 3e-17 Identities = 190/276 (69%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 181356 AGCTGTTCCTTCACCTGATCGAAGTGATTGTTGTAGATGTGGGTATCACCAAGGTTGCCG 181415 ||||| |||| ||||| |||| ||| |||| ||||| |||| || ||| | | | Sbjct 31833 AGCTGCTCCTCGACCTGCTCGACGTGGTTGTCGTAGACGTGGCAGTCGCCACCGGTCCAC 31892 Query 181416 ATCAGTTCCCCGACTTCAAGACCACATTCCAGCGCGATCAGATGTGTCAGGAGCGCGTAA 181475 | | || ||||| || || || | | |||||||| || ||||| |||||||| Sbjct 31893 ACGAAGTCGCCGACCTCGAGCCCGGTCTGCGCCGCGATCATGTGGGTCAGCAGCGCGTAC 31952 Query 181476 GAGGCGATGTTGAAGGGAAGCCCCAAGAAGACGTCCACGGACCGCTGATTCCAAAGGCAG 181535 |||||||||||||| || | || | ||| | |||| || |||||| | | |||| Sbjct 31953 GAGGCGATGTTGAACGGGACACCGAGGAACATGTCCGCGCTCCGCTGGTACAGCTGGCAC 32012 Query 181536 GACAGTTTGTCATTGCGAACATAGAACTGGAATCCGTAGTGGCACGGCGGCAAAGCCAT- 181594 || || ||| | | | || | ||||||||| ||||||||| | || ||||| Sbjct 32013 GAGAGCTTGCCGTCGTTGACGTGGAACTGGAAGAACGCGTGGCACGGGGCCAGCGCCATC 32072 Query 181595 TAGATCGACCGCGCCGACATTCCAAGCCGAGACCAT 181630 | | | ||| || |||| ||||| |||||||| || Sbjct 32073 TCGGGC-ACCTCGGCGACGTTCCACGCCGAGACGAT 32107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 660827294805120