Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_028947.1
Length=62738
Score E
Sequences producing significant alignments: (Bits) Value
seq63378 140 1e-28
seq63415 95.1 5e-15
>seq63378
Length=15302
Score = 140 bits (154), Expect = 1e-28
Identities = 301/446 (67%), Gaps = 12/446 (3%)
Strand=Plus/Plus
Query 12330 ATCGACGACGCGAAGTTCAAGCTGCAAGGTCTCGGCAACAC--CGCCGAAC-AGGTGCAG 12386
||||||||||||||| |||||| || ||| || || || |||| | | |
Sbjct 11601 ATCGACGACGCGAAGGGCAAGCTCGCCGGCCTC---AAGACGTCGACGAAGGACATCGCG 11657
Query 12387 TCCATCATGGACAACGCGCTGGCCGCGGTGAAGGGCACCGCGTTCGGCCTAGACGAGGCA 12446
|| |||||||||| ||| ||| | || || ||||| ||||| || | ||| |||
Sbjct 11658 TCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCA 11717
Query 12447 GCCACCACGGCCGCATC---CGCAGTGGCCGCCGGCATCAAGCCCGGGCAGCAGCTCACC 12503
|| | | ||||| ||| || |||||||| ||||||||||| ||| ||||||
Sbjct 11718 GCTGGC---GTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACG 11774
Query 12504 GACTACCTGAAGTTGGTCGGCGACACCGCGGCGATCGCCGGCACATCGCTGGCCGACATG 12563
| ||||| ||| | || |||| | || | ||||| || ||||| | ||| |||
Sbjct 11775 AAGTACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATG 11834
Query 12564 GGCGCGATCTTCAACCGTGTGCAGACGTCGGGCAAGGCGTTCACCGGAGATCTTAACCAG 12623
||| ||||| ||||| | || ||||||| | ||| | | || ||||||
Sbjct 11835 GGCTCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAG 11894
Query 12624 CTCGCCGACCGCGGCCTGCCTGTATTCCAGTGGCTTCAAGAGGAATACGGCGTAAGCGGC 12683
||||| ||||| ||| | || | ||||||||||| || |||| |||||||| || |
Sbjct 11895 CTCGCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCC 11954
Query 12684 GCAGCGCTGGCGAAGATGGTCGAAAAGGGCAAGGTCGACGCCGCAACGTTCCAACGTGTT 12743
| ||| || ||||||| |||||||||||||| | || || |||| ||
Sbjct 11955 GACAAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTC 12014
Query 12744 GTCGCGGAACGAATCGGCGGCGCCGC 12769
||| ||| ||||||||||| ||
Sbjct 12015 ATCGAGGAGAACATCGGCGGCGCGGC 12040
>seq63415
Length=16791
Score = 95.1 bits (104), Expect = 5e-15
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 595 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 649
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 5448 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 200481124903696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |