Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028947.1 Length=62738 Score E Sequences producing significant alignments: (Bits) Value seq63378 140 1e-28 seq63415 95.1 5e-15 >seq63378 Length=15302 Score = 140 bits (154), Expect = 1e-28 Identities = 301/446 (67%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 12330 ATCGACGACGCGAAGTTCAAGCTGCAAGGTCTCGGCAACAC--CGCCGAAC-AGGTGCAG 12386 ||||||||||||||| |||||| || ||| || || || |||| | | | Sbjct 11601 ATCGACGACGCGAAGGGCAAGCTCGCCGGCCTC---AAGACGTCGACGAAGGACATCGCG 11657 Query 12387 TCCATCATGGACAACGCGCTGGCCGCGGTGAAGGGCACCGCGTTCGGCCTAGACGAGGCA 12446 || |||||||||| ||| ||| | || || ||||| ||||| || | ||| ||| Sbjct 11658 TCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCA 11717 Query 12447 GCCACCACGGCCGCATC---CGCAGTGGCCGCCGGCATCAAGCCCGGGCAGCAGCTCACC 12503 || | | ||||| ||| || |||||||| ||||||||||| ||| |||||| Sbjct 11718 GCTGGC---GTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACG 11774 Query 12504 GACTACCTGAAGTTGGTCGGCGACACCGCGGCGATCGCCGGCACATCGCTGGCCGACATG 12563 | ||||| ||| | || |||| | || | ||||| || ||||| | ||| ||| Sbjct 11775 AAGTACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATG 11834 Query 12564 GGCGCGATCTTCAACCGTGTGCAGACGTCGGGCAAGGCGTTCACCGGAGATCTTAACCAG 12623 ||| ||||| ||||| | || ||||||| | ||| | | || |||||| Sbjct 11835 GGCTCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAG 11894 Query 12624 CTCGCCGACCGCGGCCTGCCTGTATTCCAGTGGCTTCAAGAGGAATACGGCGTAAGCGGC 12683 ||||| ||||| ||| | || | ||||||||||| || |||| |||||||| || | Sbjct 11895 CTCGCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCC 11954 Query 12684 GCAGCGCTGGCGAAGATGGTCGAAAAGGGCAAGGTCGACGCCGCAACGTTCCAACGTGTT 12743 | ||| || ||||||| |||||||||||||| | || || |||| || Sbjct 11955 GACAAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTC 12014 Query 12744 GTCGCGGAACGAATCGGCGGCGCCGC 12769 ||| ||| ||||||||||| || Sbjct 12015 ATCGAGGAGAACATCGGCGGCGCGGC 12040 >seq63415 Length=16791 Score = 95.1 bits (104), Expect = 5e-15 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 595 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 649 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 5448 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200481124903696