Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028952.1 Length=60934 Score E Sequences producing significant alignments: (Bits) Value seq63378 336 8e-88 >seq63378 Length=15302 Score = 336 bits (372), Expect = 8e-88 Identities = 864/1287 (67%), Gaps = 63/1287 (5%) Strand=Plus/Plus Query 536 GGCCGAGTACGAGCCGTACGT-GCCTACCGCCGAGATGGCCGAGTTCGTGCTGCGGTACT 594 |||||||||| ||||| | || |||| ||| | ||||||| || | || || Sbjct 2707 GGCCGAGTACCTCGACTACGTCGTCTCCCGC-GAGCAGCTCGAGTTCCTGATCCGCCTCT 2765 Query 595 ACGAGCTCAACCCGATCACGGGCCGCCGGATC--GTCCGGCGCGGCGTGATCAGCCGGCC 652 ||||| || ||||| ||| || |||||| | || |||| | | ||| || || Sbjct 2766 ACGAGATCGACCCGCGCACCTGCAAGCGGATCAAGACCCGCGCTG--TCATCCAGCGACC 2823 Query 653 GCGCGGGTGGGGGAAGTCCCCGTTCGTGTCTGCGATCGCGCTCGCCGAGGCGTGCGGCCC 712 || || ||||| |||||||||||| | | |||| || ||| ||| ||| | | Sbjct 2824 CCGAGGCTGGGGCAAGTCCCCGTTCCTCGCCGCGACCGGCATCGGCGAAGCGCTCTTCGA 2883 Query 713 CGTCGTCCCCAACGGTTGGGACGCCGACGGCGAGCCGGTCGGCATGGGGTGGGACCGGGT 772 ||||||||| |||| |||||||||||||| |||| |||| | |||| | || | Sbjct 2884 GGTCGTCCCCGACGGCTGGGACGCCGACGGGCAGCCCGTCGCCCGCCCGTGG-ATCGACT 2942 Query 773 CCGTACGCCGCTC------GTGCAGCTCGCCGCGGCGACGGAGAAACAGACCGAGAACAG 826 | | | || || || | | || ||||| | | || | ||| |||||| Sbjct 2943 TC--AAGACGATCATCAACGTCCCGGTCACCGCGACCTCCGATGACCAGGTGCAGAACAC 3000 Query 827 TTGGATGCCGCTGCTCGAAATGGCGCGCTCGGGCCCGGTGCTCGACGAGTACGGGCTCGA 886 ||| ||| ||||||| ||||||||| | | | || | || |||||| || |||| Sbjct 3001 GTGGGCACCGATGCTCGAGATGGCGCGCACCGACGCGCTTGTCAACGAGTTCGACGTCGA 3060 Query 887 ACCGCTCGACACGGTCGTCT--ATCTGCGGCGCGGGAAGATCGAGCCGATCACTGCCTCG 944 ||| | |||||| || || ||| ||||| | |||||||||||| ||| | || Sbjct 3061 CCCGATGGACACGTTCATCGCGATCCCCGGCG--GCAAGATCGAGCCGCGCACCTCGTC- 3117 Query 945 GCGACC--TCGGCGAAGGGCG--CGAAAGCGTG-CTTCGCGAGCCTCGACCAAACCGAGG 999 || || || |||||| | || | | ||||| | | ||||| ||||||| Sbjct 3118 -CGGCCGGTCCATCAAGGGCCTCCCCGGGCAGGTCGCCGCGATCATGGACCAGACCGAGG 3176 Query 1000 ATTGGCTGCCCGCGAACGGCGGTCGGAAGCTCGCGAAGACCATGCGGTTCAACGCGGGCA 1059 | ||| | | |||||||||| || ||| ||| ||| || |||| || | Sbjct 3177 AGTGGGTCAAGGGCAACGGCGGTCTCCGCCTGGCGCAGAACATCCGCAACAACTCGACGA 3236 Query 1060 AGATCGGCGGCAGCCTGATCGAGACGCCTAACGCGTTCACGCCGGGCGAGGACAGCGTCG 1119 || ||||| | ||||||| | || ||||||||||| || |||||| || |||| Sbjct 3237 AGGCGTCCGGCATCACGATCGAGTCCCCGAACGCGTTCACCCCTGGCGAGAACTCGGTCG 3296 Query 1120 CCGAGCAGTCCGCGGCCGACTGGAA----AGCCATTC---GAGAGGGCCGG---TCGCG- 1168 ||||| |||||| ||||||| | | | | || || | || | ||||| Sbjct 3297 CCGAGGCATCCGCGCGCGACTGGGAGCTGATCGAATCTGGGAAATACCCAGACCTCGCGG 3356 Query 1169 CGGCTCG---GGTCTGCTGTACGACCACCGCGAAGCGCCGGCCGACACCGACATGACCGA 1225 | || || | || || ||||||||||||||||||||||||||||||||| |||| Sbjct 3357 CCGCCCGCCAGATC--CTCTACGACCACCGCGAAGCGCCGGCCGACACCGACCCCGCCGA 3414 Query 1226 CGAGCAGTCGCTCGTATACGGGCTGCGGGTCGCGTACGGAGACAGCTCGGATCACCCCGA 1285 | |||| || | ||| || ||| ||||||||| ||||||||||| |||||||| Sbjct 3415 CCGCGAGTCCCTGATCGCCGGCCTCCGGTACGCGTACGGCGACAGCTCGGACCACCCCGA 3474 Query 1286 CGGGTGCGTGCTGCACGACCCGCCGTGCGCGCCGGGGTGGTCGCCGATCGAGCGGCTCGC 1345 ||| ||||| | ||| | |||||||||| ||| || ||| | ||||||||||||| || Sbjct 3475 CGGCTGCGTCATCCACCAGCCGCCGTGCGAGCCCGGCTGGGCACCGATCGAGCGGCAGGC 3534 Query 1346 CGCGGATTTCTGGGACACCTCGAACGACCCGCAAGAGCTGCGGGCCGACTACTTGAACCA 1405 || ||| ||||| |||||||||||||| | ||| || ||||||| | | ||||| Sbjct 3535 GCTGGCGTTCCTCGACACGTCGAACGACCCGCAGGTGCTCCGCGCCGACTTCCTCAACCA 3594 Query 1406 GATCACGCACGCCGCCGA--TAGCTGGTTGAGCGAGCCCGAGGTGCGCGCGGCG--TCCG 1461 |||||| |||| || ||| | | | || || ||||||| || | |||| || | Sbjct 3595 GATCACCCACG-CGACGAACTCGTTCGTCTCGC-AGCCCGA---GCTCAAGGCGATTCAG 3649 Query 1462 AC-CTCGGCAAGGTCGTCGAGCCGGGCGAGCGCATCGTGCTCGGGTTCGACGGGTC---G 1517 | |||| ||||||| || | | ||||| || |||||| |||||||| || | Sbjct 3650 GCACTCGACAAGGTCATCTCGAAGACCGAGCCGGTCACGCTCGGCTTCGACGGCTCCGAG 3709 Query 1518 CGGCGCCGGAACCGCAAGGTCA---CCGACGCGACCGCGCTTGTCGGGTGCCGACTGTCC 1574 ||||| | | |||||| || ||||| |||| | || | || | | | || Sbjct 3710 GGGCGCAAGCCCGGCAAGGGCACTGCCGACTCGACGGTCCTCATTGGCTACTCCGTCACC 3769 Query 1575 GACGGGCATGTGTTCCCCATCGGCGTGTGGGAGCAGCCCGACGGCGCCGCCGGTCGTGAC 1634 | ||| | ||| ||||||| ||||||||||||||||| | ||||| | | Sbjct 3770 CAGAAGCACCTCTTCAAGGTCGGCGTCTGGGAGCAGCCCGACGGACCTGCCGGCGAGGGC 3829 Query 1635 TGGCAGGTGCCGGTCGTCGAGGTGCTCGCCACGGTGCACGAAGCGTTCGACCGGTACGAC 1694 |||| |||||| ||||| | || | | | | |||||| | ||| || Sbjct 3830 TGGCGACCACCGGTCCTCGAGATCGAGGCGGCCATCCGGCAGGCGTTCAAGGACTACAAC 3889 Query 1695 GTCGTCGGCATGTACGCCGACC---CCGCGAAGTGGGAAAGCCACGTCGCGGAC-TGGGA 1750 |||||||| | |||||||||| ||||| ||||| | ||||||| | ||| ||||| Sbjct 3890 GTCGTCGGGTTCTACGCCGACCCGTCCGCGGGGTGGGCAGGCCACGT-GAAGACGTGGGA 3948 Query 1751 AGCGGCGTACGGGCGGCGGCTCAAGGT 1777 || | |||| | |||||||||||| Sbjct 3949 GGCCGAGTACTCGAAGCGGCTCAAGGT 3975 Score = 122 bits (134), Expect = 3e-23 Identities = 198/279 (71%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 70 GACGGCGAGCTGCGCGAGTTCGTGTGGCCCGAGCGCACCCGCGAGTGGTGGCGCATGTGG 129 ||||||||||| ||||||||| |||||| | |||||||||||||||| ||||||| Sbjct 2307 GACGGCGAGCTCCGCGAGTTCAAGTGGCCGGCCATCACCCGCGAGTGGTGGGACATGTGG 2366 Query 130 ATCGA-CTCGCCGCAGTCCGATC-ACTTCGGCTCGTCCGACTGGCAGTACCTACTCGACA 187 ||| |||||| | | || || ||||| | || |||||||| | || | ||||| Sbjct 2367 -GCGACCTCGCCCCTCT-CGCTCGACTTCACCGCGACCGACTGGTCCGAGCTGCGCGACA 2424 Query 188 CGGCCCTGATTCACGCGCGGCTGTGGTCGGGCGAGCTGTCCGCGGCCGCCGAGCTGCGGC 247 | || || || |||||||| ||| ||||| | ||||||||||| || | Sbjct 2425 CCGCACTCATCCACGCGCGCTACTGGAACGGCGACATCAAGCTCGCCGCCGAGCTCCGTC 2484 Query 248 TGCGCGTCGCTGCGTTCGGCGCGACGCCGGCGGACCGGGCCCGGCTCAGGATGGTTTTCG 307 | ||| ||| |||||||||||| || | |||||| || |||||| |||| |||| Sbjct 2485 TCCGCACCGCGAAGTTCGGCGCGACCCCCGAGGACCGCGCGCGGCTCCGGATCACGTTCG 2544 Query 308 CCGAGGCGGACGGCGCC--GACGAGGGCCGCGGCGCGTC 344 | |||| || | ||| ||||| | || | || |||| Sbjct 2545 CGCAGGCTGAGGAGGCCGAGACGAAGACCACCGCCCGTC 2583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194719878448128