Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq61823 1243 0.0 seq42391 91.5 5e-14 >seq61823 Length=3776 Score = 1243 bits (1378), Expect = 0.0 Identities = 1949/2752 (71%), Gaps = 90/2752 (3%) Strand=Plus/Minus Query 38050 GTCGAACGCACCGGCCTTGATCAAGGACTCGACGGCTCGCTTGCTCACGTTCGCCTGAG- 38108 ||||||||| ||||||||||||| |||||||| | |||||| || | || | ||| Sbjct 3093 GTCGAACGCGCCGGCCTTGATCAGCGACTCGACCGTGCGCTTGTTCGC---CGAC-GAGA 3038 Query 38109 TCGC---CGACCGGAGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGCAGTT 38165 ||| | ||| |||||||| | | || |||| ||| ||| || | Sbjct 3037 TCGGGATCTTCCGCAGGAAGTCGTGGAACGACTCGAACGCGCCC-----TTCTCGGTGCG 2983 Query 38166 GG-----ACGATCTCCTCGACCATGCTCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAA 38220 || ||||| || ||||||| | | ||| ||||| | ||| || ||||| Sbjct 2982 GGCCTTCACGATGTCGTCGACCACGTTGAAGCCGACGTTGCGGATCGCGCCCATACCGAA 2923 Query 38221 GCGGATCTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGACCGACACGTCGGGCGG 38280 |||||| || || ||| | | |||| | | |||| | ||||| ||||| Sbjct 2922 GCGGATGTCG---TCACCGACGGCCGCGAAGAACCCGATCGACTCGTTGACGTCCGGCGG 2866 Query 38281 CAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTC 38340 || |||| | ||||||||| | ||||||| ||||||| ||||| ||||| | | Sbjct 2865 CATGACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGGGCCAGCTTGTCGCGGGC 2806 Query 38341 GTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTA 38400 ||| || || ||||| |||| || ||||||||||||||||||||||||| ||| ||||| Sbjct 2805 GTCACCGACGGAGGTCAGCAGCGCGGCCATGTACTCGGCCGGGTAGTGCGCCTTGAGGTA 2746 Query 38401 CGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 38460 ||| || | | | | || | ||||||||||| ||||||||||||||||| ||||| | Sbjct 2745 CGCGGTCCAGAACGAGACCACGCCGTACGCCGCCGAGTGCGCCTTGTTGAACGCGTAGTC 2686 Query 38461 GGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCGTCCGAGTAGCCTCGCTC 38520 || ||| || | || | |||||||| | | ||| |||||| |||||||||| || Sbjct 2685 GGAGAACGGCAGCAGGATGTCCCACAGGGTCTTGATCGCAGCGGCCGAGTAGCCGTTGTC 2626 Query 38521 --GCTTGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTT- 38577 || ||| |||||| |||| || ||| |||| ||||| |||| ||||||||| Sbjct 2625 CTGCATGC--CCTTCTCGAAGCCGGCGTACTGCTTGTCCAGC---TCGGACTTCTTCTTC 2571 Query 38578 --GCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGC 38635 |||||||||||| ||||| | ||| ||||| ||||||| | ||||||| | ||||| Sbjct 2570 TTGCCCATGGCGCGGCGGAGGATGTCCGCCTGGCCGAGGGAGAACCCGGCGACCTTCTGC 2511 Query 38636 GCC---GCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATC 38692 || ||| | |||||||||||||||||||| || ||| |||||| | | | ||| Sbjct 2510 GCGATGGCCATG---ACCTGCTCCTGGTAGATGATCAGGCCGTAGGTCGTGCCGATGATG 2454 Query 38693 TCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGCCCGTTCTTG 38752 || || ||||| || | ||| |||||||||||||||||| ||||| ||||||||| Sbjct 2453 TCCTTGAGGGGCTCTTCGAGCTCCGGGTGGATCGGCGTGATCGGCTGCTCGCCGTTCTTG 2394 Query 38753 CGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCCACG 38812 || || |||||||||||||||||| | |||||||| |||||||||||||| || | | Sbjct 2393 CGCAGCGCGTAGTTCGTGTGCGAGTTCGCACCCATCGGCCCCGGACGGTACAGGGCGATG 2334 Query 38813 ACGGCGGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCG 38872 | ||||||||||||||||| | ||||||||||| ||||||||||||| |||||||| | Sbjct 2333 AGCGCGGAGATGTCCTCGAAGTTGTCCGGCTTCATCAGGCGGAGCAGGCCGCGCATCGGG 2274 Query 38873 CCGCCGTCGAGCTGGAACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCG 38932 |||||||||||||||||||| || |||||||| | ||| ||| |||||| | || Sbjct 2273 CCGCCGTCGAGCTGGAACACGCCCAGGGTGTCGCCGCGCTGCAGGAGCGCGTACGCCTCG 2214 Query 38933 GGGTCATCCAGCGGGATGTTCTCGATGTCGACGT-GCTCACCACGGTTGCGGCG-GATGT 38990 ||||| || ||| ||| |||||| ||||| || | || || ||||| || | ||||| Sbjct 2213 GGGTCCTCGAGCCCCATGGTCTCGAGGTCGAGGTCGATCCCC-CGGTT-CGTCTTGATGT 2156 Query 38991 TCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCA 39050 | |||| ||||| | ||||||||||||||||||||||| |||||||||||||| | || Sbjct 2155 TGTCGAGGGCGTCACTGATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCA 2096 Query 39051 GGCCCAGAGCCTC-GCAGCTCGGGTAGTCGAACTGCGTGATCGTTACGCCGTCCGCAGGC 39109 |||| || | ||| || || |||||||||||||||||||| | ||||||| | Sbjct 2095 GGCCGAGCGACTCCGCTGC-CGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCC 2037 Query 39110 CGCACCCACGTCGGGATGTGATCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCG 39169 ||| | |||||||| |||| |||||| ||| |||||||| || ||||| ||| Sbjct 2036 CGCTTCATGATCGGGATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCGGCCGCG 1977 Query 39170 TGCACGCCCATCTGCCGGACGAGACCTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTC 39229 ||||| ||| ||| || || || |||||||| ||||| ||| | ||| |||| Sbjct 1976 TGCACACCCCACTGGCGCTTCAGCCCCTCGAGGCCGAGCGCGGTGTCGAACACCGTCTTC 1917 Query 39230 GCGTCCTTGTCGTTCTCGTACAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGC 39289 || || |||| ||||| | || |||| ||| | || || | | |||| ||||| Sbjct 1916 GCCTCGGGGTCGGTCTCGACGACCGTGCGGACGTCGACGGCTTCCTTGAAGCGGGGGTGG 1857 Query 39290 TCCGGGTTGGTGATGCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCC 39349 ||| || | ||| || || || || | ||||||||| | ||| |||| Sbjct 1856 TCCTTGTCGAAGATCCCAGTGAGCGGGATGTCCTTGCCCATCACGGGCGGCGGCATCGCC 1797 Query 39350 TTGGTCAGCTTCTCGCCGA-CCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCAT 39408 ||||| ||||||||||| | | ||| ||| | | || ||||| | | |||||||| Sbjct 1796 TTGGTGAGCTTCTCGCCCATGCCGAACGGG-AAGCCGAGGACGCGCGAGGAGTCCTTCAG 1738 Query 39409 CGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTA 39468 ||| | ||||||||| |||||||||| ||||||| || || || ||||| Sbjct 1737 CGCCTGCTTCGCCTTGATCGTGCCGTACGTGACGATCTGCGCCACGCGCTCCGACCCGTA 1678 Query 39469 CTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCAC 39528 |||||||||||||||| |||| | || || ||||| ||||| |||||||||| ||| | Sbjct 1677 CTTCTCGGTGACGTACTTGATCGCCTCACCGCGGCGCCGGTCGTCGAAGTCGACGTCGAA 1618 Query 39529 GTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGAT 39588 ||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| |||| Sbjct 1617 GTCGGGCATCGAGACGCGGTCCGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCCGGAT 1558 Query 39589 GGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACG 39648 ||||| ||||||||||| | | |||||||| ||| ||| || || | || ||||| Sbjct 1557 CGGGTCGAGGTCGGTGATGCGCATCGCGTACGCCACCATCGAACCGGCACCGGAACCACG 1498 Query 39649 CCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAG 39708 || |||||||| | | ||||| | ||||| |||| ||||||||||||||| || || Sbjct 1497 ACCCGGGCCGACACGGATGCCGTTGTTCTTCGACCAGTTGATGAAGTCGGCGACCACCAG 1438 Query 39709 GAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGACCTGCGTTCG 39768 |||||| |||||| |||||||||||||| || | ||||||||||| | ||| || Sbjct 1437 GAAGTAGCCCGGGAAGCCCATCTGGTTGATGATCCGGGTCTCGTAGTCGGC--GCGCTC- 1381 Query 39769 GTGCTCGTC-GTCGT--ACCCCTGCGGGAAGCGACGGTCCATGCCGAT---GAGCACCTG 39822 ||| | || | ||| || | ||| |||| || | || | || | ||| Sbjct 1380 CTGCACCTCGGGCGTGATGCCGTCGGGGTAGCGGTACTCGAGCCCCTTCGCGATCTCCTT 1321 Query 39823 CTCGCGGAAGAACTGGCCCTCCGTCTGGCCTTCGGGCACCGGGAAGCGGGGCATGAGGTT 39882 |||| | |||| ||| |||| ||| ||||||||||||| |||||| ||| Sbjct 1320 CTCGAACCACGACTG---CTCGGTCTCGCCGGCGGGCACCGGGAACTTCGGCATGTAGTT 1264 Query 39883 ---CTGGAACTCGAACATGCCGGTCGTGTCGACCCGGTCAGCGATCTCCAGCGTGGTG-C 39938 | | |||||| | | || | ||| || ||||| ||||||| || | Sbjct 1263 GGCCGTGGTGTCGAACTCGAC------GTTGCACCGCTCGGCGATGAGCAGCGTGTTGTC 1210 Query 39939 GCATCCCCCACGACCAGATGTCGGAGCTGTCGATG-GCTGCCATCTCGGCGGCCGACTTC 39997 ||| || | | | |||| || | || | || | ||||| || | || |||| Sbjct 1209 GCAGGCCTCGGG----GTTGTC---GCGGAAGAGGTGCCG-CATCTGCGCCGGCGTCTTC 1158 Query 39998 AGGTAGTACCCTTCGCCCTCGAACCGGAAGCGATCCTCCTGGTAGAGGGACGAGCCGGTC 40057 |||||| || | ||| | |||||| |||||| | | | || || | ||| |||| | Sbjct 1157 AGGTAGAACTCGTCGGCGTCGAACTTGAAGCGGTTCGGGTCGTTCAGCGTCGACCCGGAC 1098 Query 40058 TGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTGCGAGTCG 40117 || ||||| || || || |||| | | || || | | | |||||||||| |||| Sbjct 1097 TGCACGCAGAGGAGCGCCGCGTGCGACTTGGCGTCGTGGGCGTGCGTGTAGTGGAGGTCG 1038 Query 40118 TTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTCGTCGCGGACG 40177 || ||| | ||| | | || ||||| || | |||||| |||||| | || Sbjct 1037 TTCGTGCCGACCAGCGGGATGTCGAGGTCCTTCGCCAGGCGGATCAGGTCGCCCATGATC 978 Query 40178 CGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGAAG 40237 || ||||||||||| || ||||||||||| | ||| |||| |||||||||| |||||| Sbjct 977 CGGCGCTCGATCTCGAGCCCGTGGTCCATCACCTCGGCGAAGTAGTTGTCCTTGCCGAAG 918 Query 40238 ATCTCCCGCCACTTCGCAGCCTCGGCGACGGCCTCCTCGTACTGACCGAGGTTGAGCCGG 40297 || || || | | ||| || | || |||||| |||||||| |||||| || || Sbjct 917 ATGTCGCGGTAGTCCGCCGCTGCCTTGAGGGCCTCGTCGTACTGGCCGAGGCGCAGGCGC 858 Query 40298 GTCATCACAGCACCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGTGCTCGGCC 40357 ||| | | || |||||| ||||| || |||| | |||||| ||| || | Sbjct 857 GTCTGGATCTCTCCCGAGGGGCAGCCCGTCGTCGCGATGATGCCCTCGTGGTGTTCCTGC 798 Query 40358 ACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGACCCTCGCTGTACGAGCGAGA 40416 | |||||| ||||||||| || ||| | || | |||||| ||| || Sbjct 797 AGGAGCTCGATGTCCATGCGGGG---CTTGAAGTAGTA-CCCCTCGAGCGACGCCTTCGA 742 Query 40417 GGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGTCGCGAGCATGGTCATGTGGGT 40476 || ||| |||||||||||||| ||||||| ||||| |||| ||| |||||||| || Sbjct 741 CGACAGCCGGAACAGGTTGTGCATGCCGGTCGTGTTCTCGGCGAACATCGTCATGTGCGT 682 Query 40477 GTAGGCACCCCGACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCCCACTGGACCCG 40536 ||| | |||| |||| |||||||| || | | | | | |||||| | || || Sbjct 681 GTACGAACCCGCACCGGACACGTCGTCCC----CGCCACCGTC--GCCCCAGCGCACACG 628 Query 40537 CTCCTGGTCGGAGC---GCGAGCCCGGCGCGACGTACGCCTCGATCCCGATGATGGGCTT 40593 || ||| |||| | | || |||| || |||||||||| | |||||||| ||||| Sbjct 627 GGTCTTGTCCGAGCGGTGGGTGCGGGGCGTGATGTACGCCTCGGTGCCGATGATCGGCTT 568 Query 40594 GACCCCAGCGGCCTGCCCCTGCGTGAAGAAGTCGTACGCACCGTGCAGGTTGCCGTGGTC 40653 ||| || |||||| | | | |||| ||| |||| ||| || |||||||||||| Sbjct 567 GACGCCGCCGGCCTTGGCGGCCTTCCAGAACTCGAACGCGCCGAACATGTTGCCGTGGTC 508 Query 40654 GGTCATCGCGAGGGCCTTCATGCCCTGCGCCTTGGCCTCGGCGAACATGTCCTTCAGTCG 40713 ||||| ||| | ||| ||||||||| || || ||| || | | ||| ||||| Sbjct 507 GGTCACCGCCACGGCGGGCATGCCCTGGGCGGCGGTCTCCGCCACGAGGTCGCCGAGTCG 448 Query 40714 AGCCGCCCCGTCGAGAAGGCTGTACTCGGAGTGGACATGCAGGTGGACGAAG 40765 || || |||||||| | ||||||| ||| || ||||||||||||||| Sbjct 447 TGCGGCACCGTCGAGCATCGAGTACTCGCTGTGCACGTGCAGGTGGACGAAG 396 >seq42391 Length=23142 Score = 91.5 bits (100), Expect = 5e-14 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 39438 TCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGC 39497 |||||| ||| ||| | ||| | ||||||||||||| ||||||| |||| || || Sbjct 3203 TCGCGACCTGGGCGGCGTTGAACCGGCCGTACTTCTCGTAGACGTACTGGATGACCTCTT 3144 Query 39498 CACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCA 39557 | ||||| | |||||||||| ||| | ||||||| | ||||| | || Sbjct 3143 CGCGGCGGTCGGAGTCGAAGTCGACGTCGATGTCGGGCTCCTCGTCGCGCATCGCCGACA 3084 Query 39558 GGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAG 39612 ||||||||||||| ||||||| |||||| ||||| |||||||| |||| Sbjct 3083 GGAACCGCTCGAACGGCAGCCCGTACCGGATGGAGTCCACCGCGGTGATCTCGAG 3029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160118856957600