Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_028976.1
Length=50113
Score E
Sequences producing significant alignments: (Bits) Value
seq61823 1243 0.0
seq42391 91.5 5e-14
>seq61823
Length=3776
Score = 1243 bits (1378), Expect = 0.0
Identities = 1949/2752 (71%), Gaps = 90/2752 (3%)
Strand=Plus/Minus
Query 38050 GTCGAACGCACCGGCCTTGATCAAGGACTCGACGGCTCGCTTGCTCACGTTCGCCTGAG- 38108
||||||||| ||||||||||||| |||||||| | |||||| || | || | |||
Sbjct 3093 GTCGAACGCGCCGGCCTTGATCAGCGACTCGACCGTGCGCTTGTTCGC---CGAC-GAGA 3038
Query 38109 TCGC---CGACCGGAGGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGCAGTT 38165
||| | ||| |||||||| | | || |||| ||| ||| || |
Sbjct 3037 TCGGGATCTTCCGCAGGAAGTCGTGGAACGACTCGAACGCGCCC-----TTCTCGGTGCG 2983
Query 38166 GG-----ACGATCTCCTCGACCATGCTCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAA 38220
|| ||||| || ||||||| | | ||| ||||| | ||| || |||||
Sbjct 2982 GGCCTTCACGATGTCGTCGACCACGTTGAAGCCGACGTTGCGGATCGCGCCCATACCGAA 2923
Query 38221 GCGGATCTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGACCGACACGTCGGGCGG 38280
|||||| || || ||| | | |||| | | |||| | ||||| |||||
Sbjct 2922 GCGGATGTCG---TCACCGACGGCCGCGAAGAACCCGATCGACTCGTTGACGTCCGGCGG 2866
Query 38281 CAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTGTTCTTGTC 38340
|| |||| | ||||||||| | ||||||| ||||||| ||||| ||||| | |
Sbjct 2865 CATGACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGGGCCAGCTTGTCGCGGGC 2806
Query 38341 GTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTA 38400
||| || || ||||| |||| || ||||||||||||||||||||||||| ||| |||||
Sbjct 2805 GTCACCGACGGAGGTCAGCAGCGCGGCCATGTACTCGGCCGGGTAGTGCGCCTTGAGGTA 2746
Query 38401 CGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 38460
||| || | | | | || | ||||||||||| ||||||||||||||||| ||||| |
Sbjct 2745 CGCGGTCCAGAACGAGACCACGCCGTACGCCGCCGAGTGCGCCTTGTTGAACGCGTAGTC 2686
Query 38461 GGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCGTCCGAGTAGCCTCGCTC 38520
|| ||| || | || | |||||||| | | ||| |||||| |||||||||| ||
Sbjct 2685 GGAGAACGGCAGCAGGATGTCCCACAGGGTCTTGATCGCAGCGGCCGAGTAGCCGTTGTC 2626
Query 38521 --GCTTGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTT- 38577
|| ||| |||||| |||| || ||| |||| ||||| |||| |||||||||
Sbjct 2625 CTGCATGC--CCTTCTCGAAGCCGGCGTACTGCTTGTCCAGC---TCGGACTTCTTCTTC 2571
Query 38578 --GCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGC 38635
|||||||||||| ||||| | ||| ||||| ||||||| | ||||||| | |||||
Sbjct 2570 TTGCCCATGGCGCGGCGGAGGATGTCCGCCTGGCCGAGGGAGAACCCGGCGACCTTCTGC 2511
Query 38636 GCC---GCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATC 38692
|| ||| | |||||||||||||||||||| || ||| |||||| | | | |||
Sbjct 2510 GCGATGGCCATG---ACCTGCTCCTGGTAGATGATCAGGCCGTAGGTCGTGCCGATGATG 2454
Query 38693 TCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGCCCGTTCTTG 38752
|| || ||||| || | ||| |||||||||||||||||| ||||| |||||||||
Sbjct 2453 TCCTTGAGGGGCTCTTCGAGCTCCGGGTGGATCGGCGTGATCGGCTGCTCGCCGTTCTTG 2394
Query 38753 CGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCCACG 38812
|| || |||||||||||||||||| | |||||||| |||||||||||||| || | |
Sbjct 2393 CGCAGCGCGTAGTTCGTGTGCGAGTTCGCACCCATCGGCCCCGGACGGTACAGGGCGATG 2334
Query 38813 ACGGCGGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCG 38872
| ||||||||||||||||| | ||||||||||| ||||||||||||| |||||||| |
Sbjct 2333 AGCGCGGAGATGTCCTCGAAGTTGTCCGGCTTCATCAGGCGGAGCAGGCCGCGCATCGGG 2274
Query 38873 CCGCCGTCGAGCTGGAACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCG 38932
|||||||||||||||||||| || |||||||| | ||| ||| |||||| | ||
Sbjct 2273 CCGCCGTCGAGCTGGAACACGCCCAGGGTGTCGCCGCGCTGCAGGAGCGCGTACGCCTCG 2214
Query 38933 GGGTCATCCAGCGGGATGTTCTCGATGTCGACGT-GCTCACCACGGTTGCGGCG-GATGT 38990
||||| || ||| ||| |||||| ||||| || | || || ||||| || | |||||
Sbjct 2213 GGGTCCTCGAGCCCCATGGTCTCGAGGTCGAGGTCGATCCCC-CGGTT-CGTCTTGATGT 2156
Query 38991 TCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCA 39050
| |||| ||||| | ||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 2155 TGTCGAGGGCGTCACTGATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCATCTTGATCA 2096
Query 39051 GGCCCAGAGCCTC-GCAGCTCGGGTAGTCGAACTGCGTGATCGTTACGCCGTCCGCAGGC 39109
|||| || | ||| || || |||||||||||||||||||| | ||||||| |
Sbjct 2095 GGCCGAGCGACTCCGCTGC-CGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCC 2037
Query 39110 CGCACCCACGTCGGGATGTGATCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCG 39169
||| | |||||||| |||| |||||| ||| |||||||| || ||||| |||
Sbjct 2036 CGCTTCATGATCGGGATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCGGCCGCG 1977
Query 39170 TGCACGCCCATCTGCCGGACGAGACCTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTC 39229
||||| ||| ||| || || || |||||||| ||||| ||| | ||| ||||
Sbjct 1976 TGCACACCCCACTGGCGCTTCAGCCCCTCGAGGCCGAGCGCGGTGTCGAACACCGTCTTC 1917
Query 39230 GCGTCCTTGTCGTTCTCGTACAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGC 39289
|| || |||| ||||| | || |||| ||| | || || | | |||| |||||
Sbjct 1916 GCCTCGGGGTCGGTCTCGACGACCGTGCGGACGTCGACGGCTTCCTTGAAGCGGGGGTGG 1857
Query 39290 TCCGGGTTGGTGATGCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCC 39349
||| || | ||| || || || || | ||||||||| | ||| ||||
Sbjct 1856 TCCTTGTCGAAGATCCCAGTGAGCGGGATGTCCTTGCCCATCACGGGCGGCGGCATCGCC 1797
Query 39350 TTGGTCAGCTTCTCGCCGA-CCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCAT 39408
||||| ||||||||||| | | ||| ||| | | || ||||| | | ||||||||
Sbjct 1796 TTGGTGAGCTTCTCGCCCATGCCGAACGGG-AAGCCGAGGACGCGCGAGGAGTCCTTCAG 1738
Query 39409 CGCGTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTA 39468
||| | ||||||||| |||||||||| ||||||| || || || |||||
Sbjct 1737 CGCCTGCTTCGCCTTGATCGTGCCGTACGTGACGATCTGCGCCACGCGCTCCGACCCGTA 1678
Query 39469 CTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCAC 39528
|||||||||||||||| |||| | || || ||||| ||||| |||||||||| ||| |
Sbjct 1677 CTTCTCGGTGACGTACTTGATCGCCTCACCGCGGCGCCGGTCGTCGAAGTCGACGTCGAA 1618
Query 39529 GTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGAT 39588
||||||||| |||||||| || ||||| ||||||||||||||||| |||||||| ||||
Sbjct 1617 GTCGGGCATCGAGACGCGGTCCGGGTTGAGGAACCGCTCGAAGATCAGCCCGTGCCGGAT 1558
Query 39589 GGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACG 39648
||||| ||||||||||| | | |||||||| ||| ||| || || | || |||||
Sbjct 1557 CGGGTCGAGGTCGGTGATGCGCATCGCGTACGCCACCATCGAACCGGCACCGGAACCACG 1498
Query 39649 CCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAG 39708
|| |||||||| | | ||||| | ||||| |||| ||||||||||||||| || ||
Sbjct 1497 ACCCGGGCCGACACGGATGCCGTTGTTCTTCGACCAGTTGATGAAGTCGGCGACCACCAG 1438
Query 39709 GAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGACCTGCGTTCG 39768
|||||| |||||| |||||||||||||| || | ||||||||||| | ||| ||
Sbjct 1437 GAAGTAGCCCGGGAAGCCCATCTGGTTGATGATCCGGGTCTCGTAGTCGGC--GCGCTC- 1381
Query 39769 GTGCTCGTC-GTCGT--ACCCCTGCGGGAAGCGACGGTCCATGCCGAT---GAGCACCTG 39822
||| | || | ||| || | ||| |||| || | || | || | |||
Sbjct 1380 CTGCACCTCGGGCGTGATGCCGTCGGGGTAGCGGTACTCGAGCCCCTTCGCGATCTCCTT 1321
Query 39823 CTCGCGGAAGAACTGGCCCTCCGTCTGGCCTTCGGGCACCGGGAAGCGGGGCATGAGGTT 39882
|||| | |||| ||| |||| ||| ||||||||||||| |||||| |||
Sbjct 1320 CTCGAACCACGACTG---CTCGGTCTCGCCGGCGGGCACCGGGAACTTCGGCATGTAGTT 1264
Query 39883 ---CTGGAACTCGAACATGCCGGTCGTGTCGACCCGGTCAGCGATCTCCAGCGTGGTG-C 39938
| | |||||| | | || | ||| || ||||| ||||||| || |
Sbjct 1263 GGCCGTGGTGTCGAACTCGAC------GTTGCACCGCTCGGCGATGAGCAGCGTGTTGTC 1210
Query 39939 GCATCCCCCACGACCAGATGTCGGAGCTGTCGATG-GCTGCCATCTCGGCGGCCGACTTC 39997
||| || | | | |||| || | || | || | ||||| || | || ||||
Sbjct 1209 GCAGGCCTCGGG----GTTGTC---GCGGAAGAGGTGCCG-CATCTGCGCCGGCGTCTTC 1158
Query 39998 AGGTAGTACCCTTCGCCCTCGAACCGGAAGCGATCCTCCTGGTAGAGGGACGAGCCGGTC 40057
|||||| || | ||| | |||||| |||||| | | | || || | ||| |||| |
Sbjct 1157 AGGTAGAACTCGTCGGCGTCGAACTTGAAGCGGTTCGGGTCGTTCAGCGTCGACCCGGAC 1098
Query 40058 TGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTGCGAGTCG 40117
|| ||||| || || || |||| | | || || | | | |||||||||| ||||
Sbjct 1097 TGCACGCAGAGGAGCGCCGCGTGCGACTTGGCGTCGTGGGCGTGCGTGTAGTGGAGGTCG 1038
Query 40118 TTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCGGTAGAGGTCGTCGCGGACG 40177
|| ||| | ||| | | || ||||| || | |||||| |||||| | ||
Sbjct 1037 TTCGTGCCGACCAGCGGGATGTCGAGGTCCTTCGCCAGGCGGATCAGGTCGCCCATGATC 978
Query 40178 CGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGAAG 40237
|| ||||||||||| || ||||||||||| | ||| |||| |||||||||| ||||||
Sbjct 977 CGGCGCTCGATCTCGAGCCCGTGGTCCATCACCTCGGCGAAGTAGTTGTCCTTGCCGAAG 918
Query 40238 ATCTCCCGCCACTTCGCAGCCTCGGCGACGGCCTCCTCGTACTGACCGAGGTTGAGCCGG 40297
|| || || | | ||| || | || |||||| |||||||| |||||| || ||
Sbjct 917 ATGTCGCGGTAGTCCGCCGCTGCCTTGAGGGCCTCGTCGTACTGGCCGAGGCGCAGGCGC 858
Query 40298 GTCATCACAGCACCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGTGCTCGGCC 40357
||| | | || |||||| ||||| || |||| | |||||| ||| || |
Sbjct 857 GTCTGGATCTCTCCCGAGGGGCAGCCCGTCGTCGCGATGATGCCCTCGTGGTGTTCCTGC 798
Query 40358 ACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGACCCTCGCTGTACGAGCGAGA 40416
| |||||| ||||||||| || ||| | || | |||||| ||| ||
Sbjct 797 AGGAGCTCGATGTCCATGCGGGG---CTTGAAGTAGTA-CCCCTCGAGCGACGCCTTCGA 742
Query 40417 GGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGTCGCGAGCATGGTCATGTGGGT 40476
|| ||| |||||||||||||| ||||||| ||||| |||| ||| |||||||| ||
Sbjct 741 CGACAGCCGGAACAGGTTGTGCATGCCGGTCGTGTTCTCGGCGAACATCGTCATGTGCGT 682
Query 40477 GTAGGCACCCCGACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCCCACTGGACCCG 40536
||| | |||| |||| |||||||| || | | | | | |||||| | || ||
Sbjct 681 GTACGAACCCGCACCGGACACGTCGTCCC----CGCCACCGTC--GCCCCAGCGCACACG 628
Query 40537 CTCCTGGTCGGAGC---GCGAGCCCGGCGCGACGTACGCCTCGATCCCGATGATGGGCTT 40593
|| ||| |||| | | || |||| || |||||||||| | |||||||| |||||
Sbjct 627 GGTCTTGTCCGAGCGGTGGGTGCGGGGCGTGATGTACGCCTCGGTGCCGATGATCGGCTT 568
Query 40594 GACCCCAGCGGCCTGCCCCTGCGTGAAGAAGTCGTACGCACCGTGCAGGTTGCCGTGGTC 40653
||| || |||||| | | | |||| ||| |||| ||| || ||||||||||||
Sbjct 567 GACGCCGCCGGCCTTGGCGGCCTTCCAGAACTCGAACGCGCCGAACATGTTGCCGTGGTC 508
Query 40654 GGTCATCGCGAGGGCCTTCATGCCCTGCGCCTTGGCCTCGGCGAACATGTCCTTCAGTCG 40713
||||| ||| | ||| ||||||||| || || ||| || | | ||| |||||
Sbjct 507 GGTCACCGCCACGGCGGGCATGCCCTGGGCGGCGGTCTCCGCCACGAGGTCGCCGAGTCG 448
Query 40714 AGCCGCCCCGTCGAGAAGGCTGTACTCGGAGTGGACATGCAGGTGGACGAAG 40765
|| || |||||||| | ||||||| ||| || |||||||||||||||
Sbjct 447 TGCGGCACCGTCGAGCATCGAGTACTCGCTGTGCACGTGCAGGTGGACGAAG 396
>seq42391
Length=23142
Score = 91.5 bits (100), Expect = 5e-14
Identities = 125/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 39438 TCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGC 39497
|||||| ||| ||| | ||| | ||||||||||||| ||||||| |||| || ||
Sbjct 3203 TCGCGACCTGGGCGGCGTTGAACCGGCCGTACTTCTCGTAGACGTACTGGATGACCTCTT 3144
Query 39498 CACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCA 39557
| ||||| | |||||||||| ||| | ||||||| | ||||| | ||
Sbjct 3143 CGCGGCGGTCGGAGTCGAAGTCGACGTCGATGTCGGGCTCCTCGTCGCGCATCGCCGACA 3084
Query 39558 GGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAG 39612
||||||||||||| ||||||| |||||| ||||| |||||||| ||||
Sbjct 3083 GGAACCGCTCGAACGGCAGCCCGTACCGGATGGAGTCCACCGCGGTGATCTCGAG 3029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160118856957600
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