Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_028978.1
Length=60609
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 369 1e-97
seq63378 170 7e-38
>seq63210
Length=11074
Score = 369 bits (408), Expect = 1e-97
Identities = 760/1113 (68%), Gaps = 58/1113 (5%)
Strand=Plus/Plus
Query 54930 TGCCTTTCGTCTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGCA 54989
|||| ||||| | ||||| |||| || ||||| || || || ||||| ||| ||
Sbjct 6804 TGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCA 6863
Query 54990 GTGTCGGCACGGTGATCCCGACCGAGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATA 55049
|| ||| |||| ||||||||| ||||| |||| || || || || || || || |
Sbjct 6864 CCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACA 6923
Query 55050 TTGGCTGCGGCATGATCGCGGCCCGCACCACGTACACGGCGAACGATCTTGAGGGCCTCA 55109
| ||||||||||||||||||| ||| ||| || |||| | ||| || | | |
Sbjct 6924 TCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCT---GCCCACCG 6980
Query 55110 AGCTGTCGGATCTGCGGGAGTCGATCGAGTCCGCTATCCCGATGAGCGCCGGGGGATACA 55169
| ||| || || || ||| ||||||| || |||||| || ||| |||| | |
Sbjct 6981 ACCTGCAGGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGA 7040
Query 55170 AC---AAGAGCCTGA--ACCGTTTTGAGTTCACCGGCGCCCGGCTGGACTGGCTGCAGCT 55224
|| |||| | | |||| ||| | | ||| ||| || | || |
Sbjct 7041 ACCGGAAGATCGTCGCCACCGCC--GAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGA 7098
Query 55225 CGTCGCTACCCGGTTCGACGTCGACCTGTCGCACTCCCCGAAGTGGCGGGAGCAGCTCGG 55284
| ||| | | |||||| || | | ||| | | || ||||||| | ||||||||
Sbjct 7099 GGCCGC---CGGCTTCGACCCCG--CGGGCGCGCACGGCGG-GTGGCGGAACCAGCTCGG 7152
Query 55285 CACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACCGGGTGTG 55344
||||| || ||||| |||||||||||| | | ||||||| | | |||| ||| ||
Sbjct 7153 GACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGACGAGCAGGACCAGGTCTG 7212
Query 55345 GTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCGCGCAGAAGCACATTCA 55404
| ||||||||||||| || || || |||||||| ||||||||||| ||| ||||||
Sbjct 7213 GCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACATCAC 7272
Query 55405 GGCCGCGCAG--GGCTATTGCCTCGCCAACG-GGCTGCAGGTGCCGCACAAGGATCTGGC 55461
| |||| || ||| || | || | || | || ||||| || || |||||
Sbjct 7273 GATCGCGAAGAAGGCGATGGA---GCGGTGGTGGATCGAGCTGCCGGACCCCGACCTGGC 7329
Query 55462 GTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCGAATTGCGCTGGGCGCA 55521
||||||||||||||||||| |||||||||||| ||| ||| ||| |||| ||||||||
Sbjct 7330 GTACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCGCA 7389
Query 55522 GCGGTTCGCGTACTACAACCGCGCCGAGATGATGGACCGATTCGC---GCAGGCGTTCAA 55578
|| |||||| | |||||||| |||||||||||||| ||| |||| | | |
Sbjct 7390 GCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCTGCGCGA 7449
Query 55579 --TCATTGGATCGGCGCGCCCGGCTACCCGGCCGAGACGATCGTCGAGACCATCAACGCG 55636
|||| ||| |||||||| | || || | ||||| ||||||
Sbjct 7450 GGTCAT-GGA----CGCGCCCGTC-----------GAGGAGC-TCGAGCGAATCAACTGC 7492
Query 55637 CACCACAACTACACGCAGAAGGAGCAGCAC-GGCGGCCGTGATGTGTGGCTGACCCGCAA 55695
|||||||||| ||||||| ||| |||| || || || |||||| || |||| ||
Sbjct 7493 CACCACAACTTCACGCAGCGCGAGACGCACTGGGGGAAGTCC-GTGTGGGTGTCCCGGAA 7551
Query 55696 GGGCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTG 55755
|||||||||| | ||||| | ||| | |||||||| || || ||||||||||||
Sbjct 7552 GGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCCCGGGTCGATGGGCACCGC 7611
Query 55756 TTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGC---TCAGCGCCGCACGG 55812
||||| ||||| ||| || || | || ||| | | || ||||||||||
Sbjct 7612 GTCGTACGTCGTCGAGGGCCTCGGCAA---CAAGCCGTCGCTCGAGTCGTCGCCGCACGG 7668
Query 55813 TGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCGACGACCTCGA 55872
||| || || | || |||||| || ||| || | ||||||| |||||| |||
Sbjct 7669 TGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCACGCACGACGAGCTCCG 7728
Query 55873 GGCGCGTATGCAGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGA 55932
|||| ||| ||||||||||||||| | ||| |||| |||||||||| || |
Sbjct 7729 GGCGGCCATGGTCGGCATCGAGTACCGCGACACCGACGCGTTCCTCGACGAGATCCCGGC 7788
Query 55933 CGCATACAAGCCGATCGACGTCGTGATGCACGACGCCGAGAGCCTGGTGTCGGT---GGA 55989
|| ||||||||||||||| |||||| ||||||| ||| |||||| | | |
Sbjct 7789 GGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGACCTCGTGTCGATCCGGCA 7848
Query 55990 CGCTGAGCTGCGGCAGCTCTTGAACGTCAAGGG 56022
| | |||||||||| || | ||||| |||||
Sbjct 7849 CAC---GCTGCGGCAGATCGTCAACGTGAAGGG 7878
>seq63378
Length=15302
Score = 170 bits (188), Expect = 7e-38
Identities = 268/384 (70%), Gaps = 0/384 (0%)
Strand=Plus/Plus
Query 12557 GTCGATCATGGACAACGCCCTGGCGGCCGTCGACAAGACGGCGTTCGGGCTCGACGAGGC 12616
|||||||||||||| ||||||| | ||||| | ||| || ||||| |||| ||| ||
Sbjct 11657 GTCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGC 11716
Query 12617 TGCCACCACAGCAGCGTCCGCGGTGGCCGCCGGGCTTGAGCCGGGCGAGCAGCTCACCGG 12676
|| | ||| || ||| || |||||||| | |||| ||| || ||||||
Sbjct 11717 AGCTGGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAA 11776
Query 12677 CTACTTGAAAACTGTCGCAGACACGGCCGCTATCGCCGGTACCTCAATGGCCGACATGGG 12736
||| | || ||| ||| ||||| | ||||| ||| ||| | | ||| |||||
Sbjct 11777 GTACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGG 11836
Query 12737 CGCAATCTTCAACAAGGTGCAGACGTCGGGCAAGGCGTTCACGGGCGACCTCAACATGCT 12796
| | ||| |||||||| | || ||||||| | ||||| | |||||||| |||
Sbjct 11837 CTCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCT 11896
Query 12797 GTCGGATCGCGGCCTGCCGATATTCCAATGGCTACAAGAGGAATACGGCGTAACCGGCGA 12856
| || || ||| | ||||| ||||| ||||| || |||| |||||||| ||| |||
Sbjct 11897 CGCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGA 11956
Query 12857 GGCGCTCTCAAAGATGGTCAGCGAGGGCAAGGTCGACGCTGCGACATTCCAGAAGGTTGT 12916
|||||| ||||||| |||||||||||||| | || || |||| ||||| |
Sbjct 11957 CAAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTCAT 12016
Query 12917 TGCCGAGCGCATCGGCGGCGCCGC 12940
| ||| |||||||||||| ||
Sbjct 12017 CGAGGAGAACATCGGCGGCGCGGC 12040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 193680664698528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |