Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq63210 369 1e-97 seq63378 170 7e-38 >seq63210 Length=11074 Score = 369 bits (408), Expect = 1e-97 Identities = 760/1113 (68%), Gaps = 58/1113 (5%) Strand=Plus/Plus Query 54930 TGCCTTTCGTCTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGCA 54989 |||| ||||| | ||||| |||| || ||||| || || || ||||| ||| || Sbjct 6804 TGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCA 6863 Query 54990 GTGTCGGCACGGTGATCCCGACCGAGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATA 55049 || ||| |||| ||||||||| ||||| |||| || || || || || || || | Sbjct 6864 CCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACA 6923 Query 55050 TTGGCTGCGGCATGATCGCGGCCCGCACCACGTACACGGCGAACGATCTTGAGGGCCTCA 55109 | ||||||||||||||||||| ||| ||| || |||| | ||| || | | | Sbjct 6924 TCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCT---GCCCACCG 6980 Query 55110 AGCTGTCGGATCTGCGGGAGTCGATCGAGTCCGCTATCCCGATGAGCGCCGGGGGATACA 55169 | ||| || || || ||| ||||||| || |||||| || ||| |||| | | Sbjct 6981 ACCTGCAGGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGA 7040 Query 55170 AC---AAGAGCCTGA--ACCGTTTTGAGTTCACCGGCGCCCGGCTGGACTGGCTGCAGCT 55224 || |||| | | |||| ||| | | ||| ||| || | || | Sbjct 7041 ACCGGAAGATCGTCGCCACCGCC--GAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGA 7098 Query 55225 CGTCGCTACCCGGTTCGACGTCGACCTGTCGCACTCCCCGAAGTGGCGGGAGCAGCTCGG 55284 | ||| | | |||||| || | | ||| | | || ||||||| | |||||||| Sbjct 7099 GGCCGC---CGGCTTCGACCCCG--CGGGCGCGCACGGCGG-GTGGCGGAACCAGCTCGG 7152 Query 55285 CACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACCGGGTGTG 55344 ||||| || ||||| |||||||||||| | | ||||||| | | |||| ||| || Sbjct 7153 GACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGACGAGCAGGACCAGGTCTG 7212 Query 55345 GTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCGCGCAGAAGCACATTCA 55404 | ||||||||||||| || || || |||||||| ||||||||||| ||| |||||| Sbjct 7213 GCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACATCAC 7272 Query 55405 GGCCGCGCAG--GGCTATTGCCTCGCCAACG-GGCTGCAGGTGCCGCACAAGGATCTGGC 55461 | |||| || ||| || | || | || | || ||||| || || ||||| Sbjct 7273 GATCGCGAAGAAGGCGATGGA---GCGGTGGTGGATCGAGCTGCCGGACCCCGACCTGGC 7329 Query 55462 GTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCGAATTGCGCTGGGCGCA 55521 ||||||||||||||||||| |||||||||||| ||| ||| ||| |||| |||||||| Sbjct 7330 GTACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCGCA 7389 Query 55522 GCGGTTCGCGTACTACAACCGCGCCGAGATGATGGACCGATTCGC---GCAGGCGTTCAA 55578 || |||||| | |||||||| |||||||||||||| ||| |||| | | | Sbjct 7390 GCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCTGCGCGA 7449 Query 55579 --TCATTGGATCGGCGCGCCCGGCTACCCGGCCGAGACGATCGTCGAGACCATCAACGCG 55636 |||| ||| |||||||| | || || | ||||| |||||| Sbjct 7450 GGTCAT-GGA----CGCGCCCGTC-----------GAGGAGC-TCGAGCGAATCAACTGC 7492 Query 55637 CACCACAACTACACGCAGAAGGAGCAGCAC-GGCGGCCGTGATGTGTGGCTGACCCGCAA 55695 |||||||||| ||||||| ||| |||| || || || |||||| || |||| || Sbjct 7493 CACCACAACTTCACGCAGCGCGAGACGCACTGGGGGAAGTCC-GTGTGGGTGTCCCGGAA 7551 Query 55696 GGGCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTG 55755 |||||||||| | ||||| | ||| | |||||||| || || |||||||||||| Sbjct 7552 GGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCCCGGGTCGATGGGCACCGC 7611 Query 55756 TTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGC---TCAGCGCCGCACGG 55812 ||||| ||||| ||| || || | || ||| | | || |||||||||| Sbjct 7612 GTCGTACGTCGTCGAGGGCCTCGGCAA---CAAGCCGTCGCTCGAGTCGTCGCCGCACGG 7668 Query 55813 TGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCGACGACCTCGA 55872 ||| || || | || |||||| || ||| || | ||||||| |||||| ||| Sbjct 7669 TGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCACGCACGACGAGCTCCG 7728 Query 55873 GGCGCGTATGCAGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGA 55932 |||| ||| ||||||||||||||| | ||| |||| |||||||||| || | Sbjct 7729 GGCGGCCATGGTCGGCATCGAGTACCGCGACACCGACGCGTTCCTCGACGAGATCCCGGC 7788 Query 55933 CGCATACAAGCCGATCGACGTCGTGATGCACGACGCCGAGAGCCTGGTGTCGGT---GGA 55989 || ||||||||||||||| |||||| ||||||| ||| |||||| | | | Sbjct 7789 GGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGACCTCGTGTCGATCCGGCA 7848 Query 55990 CGCTGAGCTGCGGCAGCTCTTGAACGTCAAGGG 56022 | | |||||||||| || | ||||| ||||| Sbjct 7849 CAC---GCTGCGGCAGATCGTCAACGTGAAGGG 7878 >seq63378 Length=15302 Score = 170 bits (188), Expect = 7e-38 Identities = 268/384 (70%), Gaps = 0/384 (0%) Strand=Plus/Plus Query 12557 GTCGATCATGGACAACGCCCTGGCGGCCGTCGACAAGACGGCGTTCGGGCTCGACGAGGC 12616 |||||||||||||| ||||||| | ||||| | ||| || ||||| |||| ||| || Sbjct 11657 GTCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGC 11716 Query 12617 TGCCACCACAGCAGCGTCCGCGGTGGCCGCCGGGCTTGAGCCGGGCGAGCAGCTCACCGG 12676 || | ||| || ||| || |||||||| | |||| ||| || |||||| Sbjct 11717 AGCTGGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAA 11776 Query 12677 CTACTTGAAAACTGTCGCAGACACGGCCGCTATCGCCGGTACCTCAATGGCCGACATGGG 12736 ||| | || ||| ||| ||||| | ||||| ||| ||| | | ||| ||||| Sbjct 11777 GTACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGG 11836 Query 12737 CGCAATCTTCAACAAGGTGCAGACGTCGGGCAAGGCGTTCACGGGCGACCTCAACATGCT 12796 | | ||| |||||||| | || ||||||| | ||||| | |||||||| ||| Sbjct 11837 CTCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCT 11896 Query 12797 GTCGGATCGCGGCCTGCCGATATTCCAATGGCTACAAGAGGAATACGGCGTAACCGGCGA 12856 | || || ||| | ||||| ||||| ||||| || |||| |||||||| ||| ||| Sbjct 11897 CGCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGA 11956 Query 12857 GGCGCTCTCAAAGATGGTCAGCGAGGGCAAGGTCGACGCTGCGACATTCCAGAAGGTTGT 12916 |||||| ||||||| |||||||||||||| | || || |||| ||||| | Sbjct 11957 CAAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTCAT 12016 Query 12917 TGCCGAGCGCATCGGCGGCGCCGC 12940 | ||| |||||||||||| || Sbjct 12017 CGAGGAGAACATCGGCGGCGCGGC 12040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193680664698528