Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq924 87.8 6e-13 seq63145 82.4 2e-11 seq2254 82.4 2e-11 seq345 82.4 2e-11 >seq924 Length=22087 Score = 87.8 bits (96), Expect = 6e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||||||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 398 CGGAGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 457 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 458 CTGTCTCCGCAAC 470 >seq63145 Length=9942 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||| ||||||||||| ||||||||||| ||||||| |||||| |||| Sbjct 8533 CGGGGTGGAGCAGTTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCGTAGGTTCAAATC 8592 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 8593 CTGCCCCCGCAACCA 8607 >seq2254 Length=33543 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 7609 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 7668 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 7669 CTGTCTCCGCAAC 7681 >seq345 Length=31606 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 1930 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 1989 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 1990 CTGTCTCCGCAAC 2002 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| ||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 7641 CGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 7582 Query 21210 CTGTCTCCGCAAC 21222 ||||||||||||| Sbjct 7581 CTGTCTCCGCAAC 7569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162401929625952