Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_029093.1
Length=75796
Score E
Sequences producing significant alignments: (Bits) Value
seq63531 446 8e-121
seq63545 132 2e-26
>seq63531
Length=42858
Score = 446 bits (494), Expect = 8e-121
Identities = 582/800 (73%), Gaps = 9/800 (1%)
Strand=Plus/Minus
Query 65749 ACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGA 65808
||||||| | ||||| || | || || |||| ||| || |||||||| || ||
Sbjct 22961 ACGTCATCCAGACCGGGTCGGTGGCGCTCGACGTCGCGCTCGGCATCGGTGGCCTGCCCC 22902
Query 65809 GGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCC 65868
| ||||| | || || ||||||||||| || || || || ||| | || ||| |||
Sbjct 22901 GTGGCCGCATCGTCGAGATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACGATCC 22842
Query 65869 ACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACT 65928
|||| | ||||| || ||| ||||| |||| ||| || | ||||||||| ||||||
Sbjct 22841 ACGCCATCGCCAACGCCCAGCGCGCCGGCGGCATCGCGGCGTTCATCGACGCGGAGCACG 22782
Query 65929 CCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 65988
|||| ||||| |||||||||||| ||||||||| ||| ||||| || | ||| |
Sbjct 22781 CCCTCGACCCCGAGTACGCCAAGAAGCTCGGTGTCGACATCGACGCGCTGCTCGTGTCGC 22722
Query 65989 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 66048
|||| ||||| | |||||||| || ||||||| ||| | |||||| || ||| |
Sbjct 22721 AGCCCGACACAGCGGAGCAGGCGCTCGAGATCGCGGACATGCTCGTCCGCTCCGGCTCGA 22662
Query 66049 TGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 66108
| | || ||||| | ||||| || ||||| || ||||| ||||||||| |||| ||||
Sbjct 22661 TCGACCTCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCG 22602
Query 66109 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 66168
| || || ||| |||||||| ||||| |||||||||||||| |||||| | |||||||
Sbjct 22601 AGATGGGCGACTCCCACGTCGGTCTGCAGGCGCGCCTCATGTCCCAGGCCCTCCGCAAGC 22542
Query 66169 TCACCGG-CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66227
|| |||| | |||| ||| | || || | ||| |||||||| ||||||||
Sbjct 22541 TCGCCGGTGGGCTGAACCAG-ACCCAGACCACGATGATCTTCATCAACCAGCTGCGCGAG 22483
Query 66228 AAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGG 66287
|||||||| |||| || ||| | ||||||||| | ||||| ||||| ||| |
Sbjct 22482 AAGATCGG---CGTGTTCTTCGGTTCCCCCGAGACCACGTCCGGCGGTAAGGCGCTGAAG 22426
Query 66288 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAG 66347
|||||||| || ||||| | || |||| ||||||| || ||| || ||
Sbjct 22425 TTCTACGCGTCCGTCCGACTCGACATCCGGCGCATCGAGACGCTCAAGAGCGGGACCGAC 22366
Query 66348 GCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 66407
|| ||||||||||||||||| || |||||||||||||||||| |||| ||||| |
Sbjct 22365 GCCGTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAG 22306
Query 66408 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGAC 66467
| ||||||||| | || ||||||| | |||||||||||| |||| | |||||||||
Sbjct 22305 CAGGCCGAGTTCGACATCCTGTACGGCGTGGGCATCTCGCGAGAGGGCTCGCTCCTCGAC 22246
Query 66468 CTGGCCGTGTCG--CAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACA 66525
| | |||||| || ||| | || ||||||||||| ||||||| || |||| | |
Sbjct 22245 TT--CGGTGTCGACCACGGCATCGTCAAGAAGTCGGGTGCCTGGTACACCTACGACGGCG 22188
Query 66526 AGAACGTCGCCCAGGGCAAG 66545
| | ||| |||||||||
Sbjct 22187 ACCAGCTCGGGCAGGGCAAG 22168
>seq63545
Length=90175
Score = 132 bits (146), Expect = 2e-26
Identities = 215/306 (70%), Gaps = 5/306 (2%)
Strand=Plus/Minus
Query 59144 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCC 59203
|| |||| ||| ||||| ||||| |||||||| | ||| || |||| ||||| ||
Sbjct 74069 GTGGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCG 74010
Query 59204 AACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGAC 59260
||||||||| ||| ||||| | ||| |||| |||| ||| ||| |||
Sbjct 74009 AACTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGAC 73950
Query 59261 GGCGACGCCACATTCCTCCGCTGC-ACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 59319
|||||||| |||||||| ||| | | | |||||||| ||||||| |||| ||||
Sbjct 73949 GGCGACGCGCTGTTCCTCCG-TGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGCGGG 73891
Query 59320 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 59379
|| ||| ||| |||||||||| ||| || |||| |||||||||| | |
Sbjct 73890 CTCACTGACGAAGGGCTCCCGCGTCATCGCGCAGGGTCGCCTCCGTCAGCGCTCCTACCA 73831
Query 59380 GACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 59439
| | || ||| | ||||||| ||||||| | ||||| |||||||||||||| ||
Sbjct 73830 GGACCGTGAGGGCCAGCAGCGCACGAGCATCGAGCTCGAGGTCGACGAGATCGGCCCCTC 73771
Query 59440 GCTGCG 59445
||| ||
Sbjct 73770 GCTCCG 73765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 242234303247728
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