Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq8791 89.7 5e-13 >seq8791 Length=173249 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| |||||| | || |||| || ||| ||||||||||| ||||| || || Sbjct 143170 ACATGAGCTATCATGCATGTCAGCAAGGCATAAGATGCAATGTTGAATGGCACTCCCAAA 143229 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| || | ||||| ||||| | ||| || || ||||||||||| || || || || Sbjct 143230 CCCATATCGGCAGATCGCTGATACATCTGACACGATAGCTCCCCATTGGCTACATAAAA 143288 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34610 TTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGG 34669 || || || || ||||||||||| || || ||| | ||||| ||||| | || ||||| Sbjct 143288 TTTTATGTAGCCAATGGGGAGCTATCGTGTCAGATGTATCAGCGATCTGCCGATATGGGT 143229 Query 34670 TTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 || || ||||| ||||||||||| ||| || |||| || | |||||| |||||||| Sbjct 143228 TTGGGAGTGCCATTCAACATTGCATCTTATGCCTTGCTGACATGCATGATAGCTCATGT 143170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447905672782080