Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq16715 96.9 2e-15 seq32996 95.1 9e-15 >seq16715 Length=90750 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || | ||||| || |||||| |||| || ||||| | Sbjct 66007 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGTTCT 65948 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||||| |||||||||||| |||| || | Sbjct 65947 GACACCATTGACAAT--GTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACC 65890 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||||||||| || | || |||| || | | | | ||||||| Sbjct 65889 AGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGGACCCTTGCTGATTACA 65830 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| ||||| | ||||| || Sbjct 65829 ACATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGTGGTGG 65781 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| ||||| ||||| || || || || || |||| || |||||| | Sbjct 66236 AATGCAAATTTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 66177 Query 27849 CGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| | | |||| || ||| || || ||||| ||||| |||| || Sbjct 66176 CGACACTATTGACAAC--GTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 66119 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| | || || ||||||||||| || | || |||| ||| | | | | |||||| Sbjct 66118 CAGCAAAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGACGGACCCTTGCTGATTAC 66059 Query 27967 AACATCCAAAAAGAG 27981 |||||||| || ||| Sbjct 66058 AACATCCAGAAGGAG 66044 >seq32996 Length=3898 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG--CA 27847 |||||||||||||| || ||| | |||||||| |||||| | || || || || || Sbjct 1088 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 1029 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || ||||| |||||| ||| || ||||| || ||| |||| || | Sbjct 1028 GATACCATTGACAAT--GTCAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACC 971 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGAC-GAACGCAGCTTGTCCGATTAC 27966 |||| || || || ||||| || |||||| | || ||| | | | |||| | || || Sbjct 970 AGCAGCGATTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTTG-CAGACTAT 912 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTG 28008 |||||||| || ||| ||| | |||||||| ||||||||| Sbjct 911 AACATCCAGAAGGAGTCAACTCTCCATTTGGTGTTGCGTTTG 870 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||||| || || || ||| || |||| ||||| ||| | Sbjct 2001 AATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTC 1942 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| |||||| ||||| ||||| |||||| |||| || Sbjct 1941 AGACACCATTGATAAT--GTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGAC 1884 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| || | || ||||| || ||||| | || || | || | |||| | ||||| Sbjct 1883 CAGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTG-CTGATTA 1825 Query 27966 CAACATCCAAAAAGAG 27981 |||||||||||| ||| Sbjct 1824 CAACATCCAAAAGGAG 1809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355586284584528