Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq32996 102 7e-17 seq6347 102 7e-17 seq6200 87.8 2e-12 seq44854 82.4 7e-11 seq4476 82.4 7e-11 >seq32996 Length=3898 Score = 102 bits (112), Expect = 7e-17 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || ||||| ||||||||||| | || ||||||||| Sbjct 1798 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 1857 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || || | ||||||||| | ||| | | || ||||| ||||| Sbjct 1858 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 1917 Query 39202 TGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 ||||| | | | || || ||| ||| || || | || ||| | ||||| Sbjct 1918 GCTTTGACATTATCAATGGTGTCTGAGCT---CTCGACCTCAAGAGTTATAGTCTTTCCG 1974 Query 39259 GTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||||||||||||||||||| Sbjct 1975 GTCAGAGTTTTAACAAAGATTTGCAT 2000 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || ||||||||||| || || ||| || || || ||||| || ||| Sbjct 492 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCA 551 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || | |||| ||||| ||||| || ||||| || | ||||||||||| | ||| Sbjct 552 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 611 Query 39178 ACGCTCTCTTTGTC 39191 | | ||| ||||| Sbjct 612 ATACCCTCCTTGTC 625 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 39059 CTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAA 39118 || ||||||| || ||||||||||| || || ||| || || || ||||| || |||| Sbjct 658 CTNCTCTTAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAA 717 Query 39119 GTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCA 39178 | || | |||| ||||| ||||| || ||||| || | ||||||||| || | ||| | Sbjct 718 GAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGCTCTGGGGGAA 777 Query 39179 CGCTCTCTTTGTC 39191 | ||| ||||| Sbjct 778 TACCCTCCTTGTC 790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 39062 CTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTG 39121 |||| || || ||||||||||| || || ||| || || || ||||| || ||||| | Sbjct 866 CTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAG 925 Query 39122 TTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGC 39181 | | |||| ||||| ||||| || ||||| || | ||||||||||| | ||| | | Sbjct 926 TCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATAC 985 Query 39182 TCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCC 39240 ||| |||| | ||| | | || ||||| | | | ||||| ||| || ||| Sbjct 986 CCTCCTTGT-CTTGAATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCC 1044 Query 39241 ACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || | || || |||| || || ||||| |||||||| Sbjct 1045 AATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1088 >seq6347 Length=16439 Score = 102 bits (112), Expect = 7e-17 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || |||||||| || || | ||||||||| || ||| |||||| || || Sbjct 12548 AAATATCTGCATTCCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGAT 12607 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||| ||||| ||||| || | | || |||||||| ||||| ||||| || | |||||| Sbjct 12608 ATTGTAATCAGCAAGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTG 12667 Query 39165 CTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 |||||| ||||| | || |||||||| Sbjct 12668 CTGGTCTGGTGGAATCCCT-TCTTTGTC 12694 >seq6200 Length=22545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || || || || || |||||||| || || | || || Sbjct 22085 CACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTC 22144 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || | |||||||||||| | ||| | | || |||||| Sbjct 22145 AAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTG 22204 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| | | | || ||| ||||| || || | ||||| | || Sbjct 22205 GATCTTGGCTTTGACATTATCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTT 22264 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||| || ||||| || ||||| |||||||| Sbjct 22265 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 22297 >seq44854 Length=5023 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| || ||||| || | || ||||||||||| || ||||| | Sbjct 1965 CTTTTTGGATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGA 1906 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | || |||||||||| |||||| Sbjct 1905 TCAGTCGCTGCTGGTCCGGTGG 1884 >seq4476 Length=15589 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||| || ||||| || | || ||||||||||| || ||||| | Sbjct 13536 CTTTTTGGATATTATAATCCGCCAGTGTACGCCCATCTTCAAGCTGTTTACCAGCAAAGA 13477 Query 39155 TAAGACGCTGCTGGT-CGGTGG 39175 | || |||||||||| |||||| Sbjct 13476 TCAGTCGCTGCTGGTCCGGTGG 13455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429212313421232