Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq6171 131 1e-25
>seq6171
Length=36435
Score = 131 bits (144), Expect = 1e-25
Identities = 379/578 (66%), Gaps = 9/578 (2%)
Strand=Plus/Minus
Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604
||||||||||||||||| ||||||||||||||||| ||| | || || || || |||
Sbjct 4968 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 4909
Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAA 4662
||||| |||||||| || | ||||| | ||||||||| | | | | | | | | |
Sbjct 4908 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTG--A 4851
Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722
|||| || ||||| || ||||| || || || || | |||| | | |
Sbjct 4850 AGAAAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAG---TTTCGGAAC 4794
Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782
| | ||||| | ||||| || || || || | ||| || || || || | || |
Sbjct 4793 CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTG 4734
Query 4783 CGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842
| || ||||| || ||||| | || | || || | || | || | || |
Sbjct 4733 CACGGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGT 4674
Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCT 4901
|||| || ||||| ||||| || || || || || || || || |||||| | || ||
Sbjct 4673 ACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGCGCCTCA 4615
Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961
| || || || || || || ||| || | | ||| || || || ||||| |
Sbjct 4614 GCAACCTGGACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAG 4555
Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC 5021
|| |||||||| || | ||||||| || || | ||| | | | || |||| |
Sbjct 4554 GCGGCAAAAAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCC 4495
Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081
||||| | ||| || || ||| |||||||| || ||||| || || || |||
Sbjct 4494 CAGTGACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCT 4435
Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119
|| |||||||| |||||| | ||||||||||| ||
Sbjct 4434 TTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGG 4397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426718250080112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |