Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq6171 131 1e-25 >seq6171 Length=36435 Score = 131 bits (144), Expect = 1e-25 Identities = 379/578 (66%), Gaps = 9/578 (2%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||||||||||||||| ||||||||||||||||| ||| | || || || || ||| Sbjct 4968 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 4909 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAA 4662 ||||| |||||||| || | ||||| | ||||||||| | | | | | | | | | Sbjct 4908 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTG--A 4851 Query 4663 AGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGT 4722 |||| || ||||| || ||||| || || || || | |||| | | | Sbjct 4850 AGAAAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAG---TTTCGGAAC 4794 Query 4723 CTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAG 4782 | | ||||| | ||||| || || || || | ||| || || || || | || | Sbjct 4793 CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTG 4734 Query 4783 CGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 | || ||||| || ||||| | || | || || | || | || | || | Sbjct 4733 CACGGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGT 4674 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCT 4901 |||| || ||||| ||||| || || || || || || || || |||||| | || || Sbjct 4673 ACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGCGCCTCA 4615 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | || || || || || || ||| || | | ||| || || || ||||| | Sbjct 4614 GCAACCTGGACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAG 4555 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC 5021 || |||||||| || | ||||||| || || | ||| | | | || |||| | Sbjct 4554 GCGGCAAAAAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCC 4495 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 ||||| | ||| || || ||| |||||||| || ||||| || || || ||| Sbjct 4494 CAGTGACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCT 4435 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 || |||||||| |||||| | ||||||||||| || Sbjct 4434 TTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGG 4397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426718250080112