Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_030696.1 Length=93139 Score E Sequences producing significant alignments: (Bits) Value seq63210 235 3e-57 seq63545 205 6e-48 seq63416 145 5e-30 seq63251 104 1e-17 >seq63210 Length=11074 Score = 235 bits (260), Expect = 3e-57 Identities = 781/1202 (65%), Gaps = 88/1202 (7%) Strand=Plus/Plus Query 47423 GCATCGATCCTCGACGACATGACCACACAACAGGCCGGCGAGATCTCGTCGC-TGCCGTT 47481 || ||||| ||||| || | || || |||||| || || | | |||| ||||||| Sbjct 6752 GCCTCGATGCTCGAGGAGAACACGGAGCAGCAGGCCCGCACGACCGC-TCGCATGCCGTT 6810 Query 47482 CATTCACCCTCACGTCGCCCTGATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTTGG 47541 | | ||| ||| | ||||| |||||||| || ||| |||| || | |||| || Sbjct 6811 CGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCACCGTGGG 6870 Query 47542 CACGGTGATTCCCACCGTGGATGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGCTG 47601 | |||| || || ||| | | || | || ||||| || |||||||||||||||||||| Sbjct 6871 CTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACATCGGCTG 6930 Query 47602 CGGCATGATCGGCGTCGAAACCTGGGTGCAGAAGAGCGACATCGCAGACCTCAGCCTCGC 47661 ||||||||||| ||| ||| | | |||| ||||| | || ||| ||| Sbjct 6931 CGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCT-GCCCACCGA--CCTGCA 6987 Query 47662 GGACCTGCGTGAGCGCGTCGAGATCGCCATCCCGCTCTCCCCAGGGAACTACAAC--GTC 47719 || || || |||| ||||| ||||||||||| ||| | ||| | ||| | Sbjct 6988 GGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGAACCGGAA 7047 Query 47720 GATGGGCGCTGGGCCGAGCACACCGAGGGGCGCATCGCACGCCTGGAGGCAATGGCCGAG 47779 ||| | ||| ||| ||||| ||||||||| || ||| | ||||| ||| Sbjct 7048 GATCGTCGCCA--CCG------CCGAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGAG 7099 Query 47780 GAGAAGGGGGTCGACCTCAAGCACTCGC-CGAAG--TGGCGCGAGCAGCTGGGTTCACT- 47835 | || |||||| | | | ||| || | ||||| | ||||| || | || Sbjct 7100 GCCGCCGGCTTCGACCCCGCGGGCGCGCACGGCGGGTGGCGGAACCAGCTCGGGACGCTC 7159 Query 47836 GGGTGGTGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGTACAACCAGGGCCCGGGTGA 47895 |||| | |||||||||||||||||| | | || | || | |||| || || Sbjct 7160 GGGTCG-GGCAACCACTTCATCGAGGTCT------CCCTCGACGAGCAGGACCAGG---- 7208 Query 47896 GATCTGGCTGTTCCTCCACTCGGGGTCGCGCGGCGTCGGCAACAAGATCGCGCAGAAGCA 47955 ||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| ||| Sbjct 7209 --TCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCA 7266 Query 47956 NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATCCAGCTCGCCAACCCCGACCT 48015 |||| ||| |||| | |||||||||| Sbjct 7267 CATCACGATCGCGAAGAAGGCGATGGAGCGGTGGTGGATCGAGCTGCCGGACCCCGACCT 7326 Query 48016 GGCCTACCTGCCGTCCGGGAC-CGAC-GAATTCGGCGACTACATTCGCGAGCTCCGGTGG 48073 ||| ||||| |||| || | || | || |||| | ||||| |||||| |||||| Sbjct 7327 GGCGTACCT--CGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGG 7384 Query 48074 GCACAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACCGTTTCGTCCATGTGTTC 48133 || ||| ||||||||| ||||| | || ||||||||||| |||||| | | Sbjct 7385 GCGCAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCT- 7443 Query 48134 ACCCGGTGGCTCGAGTACTCCGATGCCGTCGAATTCGACGAGCTCGGTCGCGACGTCGAA 48193 || |||| | ||| |||| || || ||| | || Sbjct 7444 --------GCGCGAGGTC----ATG-----------GACGCGCCCG-TCGAG-----GAG 7474 Query 48194 CTCCGGCGTATCAATTGTCACCACAACTACACCGAGCGGGTCGAGATCGCC----GGCAA 48249 ||| ||| ||||| || |||||||||| ||| |||| ||||| ||| || || Sbjct 7475 CTCGAGCGAATCAACTGCCACCACAACTTCACGCAGCG---CGAGA-CGCACTGGGGGAA 7530 Query 48250 GAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGACTGAT 48309 | |||||| | | || ||||| || ||| | || | | ||| | || ||||| Sbjct 7531 GTCCGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGAT 7590 Query 48310 CCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGC-C 48368 |||||| || ||||||||| ||| || |||||| ||| || || || ||| | | Sbjct 7591 CCCCGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAAG-CCGTCGC 7649 Query 48369 TCTTCTCTGCGCCCCATGGTGCCGGCCGTCAGTATTCGCGCACCCAGGCCAAGAAGCTGT 48428 || || |||| || |||||||| || | ||| ||||| | ||| | | || Sbjct 7650 TCGAGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGT 7709 Query 48429 TCACCCTGGATGACCTC--GCCGACCGAATGAAGGGCATCGAATACCGCCACGGCGAAGA 48486 |||| | || || ||| | || || ||| |||||||| |||||| || ||| | Sbjct 7710 TCACGCACGACGAGCTCCGGGCGGCC--ATGGTCGGCATCGAGTACCGCGACACCGACGC 7767 Query 48487 GTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGGAAGATGCCAA 48546 || ||||||||||||||| || |||||| |||||||||||||||| || ||| Sbjct 7768 GTTCCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGC 7827 Query 48547 AGACCTGGTCGAAGTCGA---GGCA-GTGCTGTCCCAGCTCATGAACGTGAAAGGTGTCT 48602 ||||| || ||||| |||| |||| ||| || | |||||||| |||| || Sbjct 7828 CGACCTCGT----GTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGGTGACT 7883 Query 48603 GA 48604 || Sbjct 7884 GA 7885 >seq63545 Length=90175 Score = 205 bits (226), Expect = 6e-48 Identities = 256/346 (74%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 71932 GTGGCAAACGACACCGTGATCACCGTGATCGGAAATCTGACCGCCGATCCCGAACTGCGC 71991 ||||| ||| ||||| ||||| ||| | || || || ||||| || || || |||||| Sbjct 74096 GTGGCCGGCGAAACCGTCATCACGGTGGTGGGCAACCTCACCGCGGACCCGGAGCTGCGC 74037 Query 71992 TTCACCCCCT-CGGGCGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTT 72050 | ||| | ||||| ||||| | || ||||||||| |||| |||||| || || Sbjct 74036 TACACGCAGAACGGGCTCGCCG-TGGCGAACTTCACCATCGCGTCCACCCCTCGCACGTT 73978 Query 72051 CGACAAGCAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAA-CATCT 72109 |||| ||| | |||||||||||||||| ||| ||||| ||||| || ||| | | | | Sbjct 73977 CGACCGTCAGGCGAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCG-TGCGAGCGTGT 73919 Query 72110 GGCGCGAGCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCC 72169 |||||||| |||||| |||| | | || ||| | |||||| |||||||||| | Sbjct 73918 GGCGCGAGTTCGCCGAGCACGTGGCGGGCTCACTGACGAAGGGCTCCCGCGTCATCGCGC 73859 Query 72170 AGGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCG 72229 ||||||||||| |||||| |||| || || ||| || | || ||| ||||| Sbjct 73858 AGGGTCGCCTCCGTCAGCGCTCCTACCAGGACCGTGAGGGCCAGCAGCGCACGAGCATCG 73799 Query 72230 AGCTCGAGGTCGAGGAGATCGGCCCCGCACTGCGGTACGCCACCGC 72275 ||||||||||||| |||||||||||| | || || ||||| ||||| Sbjct 73798 AGCTCGAGGTCGACGAGATCGGCCCCTCGCTCCGCTACGCGACCGC 73753 >seq63416 Length=16760 Score = 145 bits (160), Expect = 5e-30 Identities = 305/448 (68%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 69621 CAGGCCCCCGGTCACTCGGGGGCCGATCGTTCGGTGTCGGTCACCGCCATCGAGGGTCAG 69680 ||||||||||| ||||||| | || || ||||||||| || | | ||||||||||| Sbjct 12720 CAGGCCCCCGGGCACTCGGCGAAGGACCGGTCGGTGTCGATCCGCTCGGTCGAGGGTCAG 12779 Query 69681 GTGCTCGTCCACTGCTTCTCCGAGCCAACCGACGAAATCCTCGACAAGATCGGCCTCACG 69740 ||| |||||| |||||| || || || |||||| | || | ||| | Sbjct 12780 ACCCTCATCCACTCGCACTCCGACCCGACACCGGACGTCCTCGCCGAGCTGAACCTGTCC 12839 Query 69741 GTGGCTGATCTGTTCGACAACCCCAAGGGTGTCGACTACAGGTATGACGACGGCCGGGTC 69800 || || ||||||||| | | ||||| ||||| |||| ||| ||||||||||| Sbjct 12840 ATGCAGGACCTGTTCGACGAGCAGAAGGGCGTCGAGTACAAGTACCGTGACGGCCGGGTT 12899 Query 69801 GTTCACCGGAGCACCGACAAGAAGTTCTTCCAGCAGGGCAACACCGGCGGATCCAAGCTG 69860 || ||||| | |||||||| |||| ||| |||||||| || | ||| Sbjct 12900 GTACACCGCTCCCCCGACAAGCGGTTCCGGCAGTCCGGCAACACGAAGGGCCGGGACCTG 12959 Query 69861 TACCGGGCGTCGAAACTGGCCG---ACGCCGAGGAGATCTGGTTCGCCGAGGGCGAGAAG 69917 |||| |||||| | | || || | ||||| | | ||| | | ||||||||||||| Sbjct 12960 TACC--GCGTCG-AGCGGGTCGGTCAGGCCGATCCGGTGTGGATGGTCGAGGGCGAGAAG 13016 Query 69918 GATGTCCACGCGCTCGAGCGACTCGGCCTGGTAGCCACCACCAACGCCGGCGGTGC-GGC 69976 || |||||||| ||||| || ||||| || || | || || ||||| ||| Sbjct 13017 GACGTCCACGCACTCGAATCGCTGGGCCTCGTCGCTGTCTGCACGGCGATGGGTGCTGGC 13076 Query 69977 GA-ACATCAAGAACTTCGACCTCACCCCACTGCACGGCAAGCGACTGGTCATCATTCGCG 70035 | | || | ||||||||| |||| |||||||||||| || || || | |||| Sbjct 13077 AAGGCGGCA--ATGTTCGACCTCGCCCCGCTGCACGGCAAGAAGGTGCTCCTCGTACGCG 13134 Query 70036 ATGACGACGAAGCCGGCATGAAGCATGC 70063 | ||||| ||||||||||||| || Sbjct 13135 ACATGGACGAGCCCGGCATGAAGCACGC 13162 >seq63251 Length=12045 Score = 104 bits (114), Expect = 1e-17 Identities = 264/391 (68%), Gaps = 22/391 (6%) Strand=Plus/Plus Query 42905 GCATCGGCCTGATCACCG-CACCGAATAGCGACGCGGAGAAGGACGTGCTCAGCGTCGCG 42963 |||||||||| ||||||| || || | ||||| ||||||||||| |||| || Sbjct 7939 GCATCGGCCTCATCACCGGCAAGGACTCA-GACGCCGAGAAGGACGTCA--AGCGGAACG 7995 Query 42964 CGAGGA--CGGTGGTCGAGCGTCAGCTTCAAG-CTGTCCCACATCAACGTCCAGGGGCAG 43020 || | |||||| || ||| ||| | | |||| ||| | ||| ||||| || Sbjct 7996 CGCAGCTGCGGTGGCCGCAGGTCGAGTTCCGGACCGTCC-ACACCGCCGTGCAGGGCGAG 8054 Query 43021 CGCTGCGCCGGCGCGGCGAAGCGAGCCATCGAGGAGTTCGACGCGGACCCGGGCGTGGAC 43080 || || |||| || | |||||| ||| ||||||| ||||||| ||| ||| Sbjct 8055 CGGACCGTGGGCGAGGTCACCGCCGCCATCCTCGAGCTCGACGCCGACCCGGACGTCGAC 8114 Query 43081 GTCATCATCCTGGCCCGCGGCGGCGGC----TCGAAGGAAGACCTCCTCCCGTGGTCCGA 43136 ||||||||| | || ||||| || ||| || | || |||| ||| | ||| Sbjct 8115 GTCATCATCATCGCGCGCGGTGGTGGCGACTTCCA--GA--ACCTGCTCGGCTTCAGCGA 8170 Query 43137 CGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACC---CCGGTTGTGTCTGCGATTGG 43193 ||||| || || || ||||| |||||| || ||| ||| | || || || || || Sbjct 8171 CGAGGGACTCGTCCGGGCCGC---CGCGTCCGCCACCACTCCGATCGTCTCCGCCATCGG 8227 Query 43194 CCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGAC 43253 |||||| || |||||| |||||||| || | ||||| || || | || ||||| Sbjct 8228 GCACGAGGCCGACCGGCCGATCCTCGACGAGGTCGCCGACCTCCGCGCCTCCACCCCGAC 8287 Query 43254 GGATGCAGCGAAACGTGTCGTACCCGACGTG 43284 || || || || || || || || |||||| Sbjct 8288 CGACGCCGCCAAGCGCGTGGTGCCGGACGTG 8318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297688842382400