Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_030901.1 Length=92618 Score E Sequences producing significant alignments: (Bits) Value seq63210 232 4e-56 seq63545 208 5e-49 seq63416 131 1e-25 seq63251 104 1e-17 >seq63210 Length=11074 Score = 232 bits (256), Expect = 4e-56 Identities = 777/1197 (65%), Gaps = 82/1197 (7%) Strand=Plus/Plus Query 46754 GCTTCGATCCTCGACGACATGACCACACAACAGGCCGGCGAGATCTCGTCGC-TGCCGTT 46812 || ||||| ||||| || | || || |||||| || || | | |||| ||||||| Sbjct 6752 GCCTCGATGCTCGAGGAGAACACGGAGCAGCAGGCCCGCACGACCGC-TCGCATGCCGTT 6810 Query 46813 CATCCACCCTCACGTCGCTCTGATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTTGG 46872 | | ||| ||| | || || |||||||| || ||| |||| || | |||| || Sbjct 6811 CGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCACCGTGGG 6870 Query 46873 CACGGTGATACCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGGTG 46932 | |||| || || || | | ||| | || ||||| || ||||||||||||||||| || Sbjct 6871 CTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACATCGGCTG 6930 Query 46933 CGGCATGATCGGCGTCGAAACCTGGGTGCAGAAGAGCGACATCGCAGACCTCAGCCTCGC 46992 ||||||||||| ||| ||| | | |||| ||||| | || ||| ||| Sbjct 6931 CGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCT-GCCCACCGA--CCTGCA 6987 Query 46993 GGACCTGCGTGAGCGCGTCGAGATCGCCATCCCGCTCTCGCCGGGGAACTACAACGTCGA 47052 || || || |||| ||||| ||||||||||| || ||||| | ||| || Sbjct 6988 GGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGAACCG-GA 7046 Query 47053 TGGGCGTTGGGCCGCGCACACCGAGGAGCGCATTGCGCGGCTCGAGGCCATGGCCGAAGA 47112 | ||| | || | | ||||| ||||| || ||||||| | ||||| || | Sbjct 7047 AGATCGTCG--CCAC---CGCCGAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGAGGC 7101 Query 47113 GAAGGGCGTCGACCTCAAGCATTCGC-CGAAG--TGGCGGGAACAGCTGGGTTCGCTCGG 47169 ||| |||||| | | ||| || | |||||| | ||||| || ||||||| Sbjct 7102 CGCCGGCTTCGACCCCGCGGGCGCGCACGGCGGGTGGCGGAACCAGCTCGGGACGCTCGG 7161 Query 47170 CGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCACGAGCGTGGACCGGGCGCGAT 47229 |||||||||||||||||| | | || | |||||| ||||| || | Sbjct 7162 GTCGGGCAACCACTTCATCGAGGTCT------CCCTCGACGAGCA-GGACCAGG-----T 7209 Query 47230 CTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTGGGAAACAAGATCGCGCAGAAGCACAN 47289 |||||| |||||||| ||||| ||||| || || ||||||||||| ||| ||||| Sbjct 7210 CTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACAT 7269 Query 47290 NNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATCCAGCTCGCCAACCCCGACCTGGC 47349 |||| ||| |||| | ||||||||||||| Sbjct 7270 CACGATCGCGAAGAAGGCGATGGAGCGGTGGTGGATCGAGCTGCCGGACCCCGACCTGGC 7329 Query 47350 CTACCTGCCGTCCGGG--ACTGACGAGTTCGGCGACTACATCCGCGAGCTCCGGTGGGCA 47407 ||||| |||| || || |||||||| | |||||| |||||| |||||||| Sbjct 7330 GTACCT--CGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCG 7387 Query 47408 CAGGCTTTCGCGCTCGAGAACCGCGCCGAGATGATGGACCGTTTCGTCCATGTGTTCACC 47467 ||| ||||||||| ||||||| |||||||||||||| |||||| Sbjct 7388 CAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCC----------- 7436 Query 47468 CGGTGGCTCGAGTACTCCGATGCTGTCGAATTCGGCGAGCTCGGGCGCGACGTCGAAGTC 47527 ||| || || || ||| || || || || || || || || Sbjct 7437 ----GGC---AG--CTGCG-------CGAGGTCATGGA---CGCGCCCGTCGAGGAGCTC 7477 Query 47528 CGGCGAATCAATTGCCACCACAACTACACCGAGCGGGTCGAGATCGCC----GGCAAGAA 47583 ||||||||| ||||||||||||| ||| |||| ||||| ||| || ||| Sbjct 7478 GAGCGAATCAACTGCCACCACAACTTCACGCAGCG---CGAGA-CGCACTGGGGGAAGTC 7533 Query 47584 AGTGTGGCTCACACGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGACTGATCCC 47643 |||||| | | || ||||| || ||| | || | | ||| | || |||||||| Sbjct 7534 CGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCC 7593 Query 47644 CGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGC-CTCT 47702 ||| || ||||||||| ||| || |||||| ||| || || || ||| | ||| Sbjct 7594 CGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAAG-CCGTCGCTCG 7652 Query 47703 TCTCTGCGCCCCATGGTGCCGGCCGTCAGTATTCGCGCACCCAGGCCAGGAAGTTGTTCA 47762 || |||| || |||||||| || | ||| ||||| | ||| || | ||||| Sbjct 7653 AGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCA 7712 Query 47763 CCCTGGATGACCTC--GCCGACCGAATGAAGGGCATCGAATACCGCCACGGTGAGGAGTG 47820 | | || || ||| | || || ||| |||||||| |||||| || || | || Sbjct 7713 CGCACGACGAGCTCCGGGCGGCC--ATGGTCGGCATCGAGTACCGCGACACCGACGCGTT 7770 Query 47821 GATTGACGAGATCCCCGACGCCTACAAGGATATCGACCAGGTGATGGAAGACGCCAAGGA 47880 | ||||||||||| | || |||||| |||||||||||||||| |||||| || Sbjct 7771 CCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGA 7830 Query 47881 CCTGGTCCAGGTCGA---GGC-CGTGTTGTCGCAGCTCATGAACGTGAAAGGTGTCT 47933 ||| || ||||| ||| | | || |||| || | |||||||| |||| || Sbjct 7831 CCTCGT----GTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGGTGACT 7883 >seq63545 Length=90175 Score = 208 bits (230), Expect = 5e-49 Identities = 257/346 (74%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 70869 GTGGCAAACGACACCGTGATCACCGTGATCGGAAATCTGACCGCCGATCCCGAACTGCGC 70928 ||||| ||| ||||| ||||| ||| | || || || ||||| || || || |||||| Sbjct 74096 GTGGCCGGCGAAACCGTCATCACGGTGGTGGGCAACCTCACCGCGGACCCGGAGCTGCGC 74037 Query 70929 TTCACCCCCT-CGGGCGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTT 70987 | ||| | ||||| ||||| | || ||||||||| |||| |||||| || || Sbjct 74036 TACACGCAGAACGGGCTCGCCG-TGGCGAACTTCACCATCGCGTCCACCCCTCGCACGTT 73978 Query 70988 CGACAAGCAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAA-CATCT 71046 |||| ||| | |||||||||||||||| ||| ||||| ||||| || ||| | | | | Sbjct 73977 CGACCGTCAGGCGAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCG-TGCGAGCGTGT 73919 Query 71047 GGCGCGAGCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCC 71106 |||||||| |||||| |||| | | || ||| | |||||| |||||||||| | Sbjct 73918 GGCGCGAGTTCGCCGAGCACGTGGCGGGCTCACTGACGAAGGGCTCCCGCGTCATCGCGC 73859 Query 71107 AGGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCG 71166 ||||||||||| |||||| |||| || || ||| || | || ||| ||||| Sbjct 73858 AGGGTCGCCTCCGTCAGCGCTCCTACCAGGACCGTGAGGGCCAGCAGCGCACGAGCATCG 73799 Query 71167 AGCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 71212 ||||||||||||| |||||||||||| |||| || ||||| ||||| Sbjct 73798 AGCTCGAGGTCGACGAGATCGGCCCCTCGCTCCGCTACGCGACCGC 73753 >seq63416 Length=16760 Score = 131 bits (144), Expect = 1e-25 Identities = 304/449 (68%), Gaps = 12/449 (3%) Strand=Plus/Plus Query 68558 CAGGCCCCCGGTCACTCGGGGGCCGATCGTTCGGTGTCGGTCACCGCCATCGAAGGCCAG 68617 ||||||||||| ||||||| | || || ||||||||| || | | |||| || ||| Sbjct 12720 CAGGCCCCCGGGCACTCGGCGAAGGACCGGTCGGTGTCGATCCGCTCGGTCGAGGGTCAG 12779 Query 68618 GTGCTCGTCCACTGCTTCTCCGAGCCAACCGACGAGATCCTCGACAAGATCGGCCTCACG 68677 ||| |||||| |||||| || || || |||||| | || | ||| | Sbjct 12780 ACCCTCATCCACTCGCACTCCGACCCGACACCGGACGTCCTCGCCGAGCTGAACCTGTCC 12839 Query 68678 GTGGCGGATCTGTTCGACAACCCCAAGGGTGTCGACTACAGGTACGACGACGGCCGGGTC 68737 || ||| ||||||||| | | ||||| ||||| |||| |||| ||||||||||| Sbjct 12840 ATGCAGGACCTGTTCGACGAGCAGAAGGGCGTCGAGTACAAGTACCGTGACGGCCGGGTT 12899 Query 68738 GTTCACCGGAGCACCGACAAGAAGTTCTTCCAGCAAGGCAACACCGGTGGCTCCAAGCTC 68797 || ||||| | |||||||| |||| ||| |||||||| ||| | || Sbjct 12900 GTACACCGCTCCCCCGACAAGCGGTTCCGGCAGTCCGGCAACACGAAGGGCCGGGACCTG 12959 Query 68798 TACCGGGCATCGA--AACTGGGTGAAGCCGAGGAGATCTGGTTCGCCGAGGGGGAGAAGG 68855 |||| || |||| | ||| | ||||| | | ||| | | |||||| ||||||| Sbjct 12960 TACC--GCGTCGAGCGGGTCGGTCAGGCCGATCCGGTGTGGATGGTCGAGGGCGAGAAGG 13017 Query 68856 ACGTCCACGCCCTCGAGCGTCTCGGTCTGGTAGCCACGAC-AAACGCCG-GCGGTGC-GG 68912 |||||||||| ||||| || || || || || | | ||| || ||||| || Sbjct 13018 ACGTCCACGCACTCGAATCGCTGGGCCTCGTCGC--TGTCTGCACGGCGATGGGTGCTGG 13075 Query 68913 CGA-ACATCAAGAACTTCGACCTCACCCCACTGCACGGCAAGCGACTGGTCATCATTCGC 68971 | | | || | ||||||||| |||| |||||||||||| || || || | ||| Sbjct 13076 CAAGGCGGCA--ATGTTCGACCTCGCCCCGCTGCACGGCAAGAAGGTGCTCCTCGTACGC 13133 Query 68972 GATGACGATGAGGCCGGCATGAAGCATGC 69000 || || ||| ||||||||||||| || Sbjct 13134 GACATGGACGAGCCCGGCATGAAGCACGC 13162 >seq63251 Length=12045 Score = 104 bits (114), Expect = 1e-17 Identities = 264/391 (68%), Gaps = 22/391 (6%) Strand=Plus/Plus Query 42596 GCATCGGCCTGATCACCG-CACCGAATAGCGACGCGGAGAAGGACGTGCTCAGCGTCGCG 42654 |||||||||| ||||||| || || | ||||| ||||||||||| |||| || Sbjct 7939 GCATCGGCCTCATCACCGGCAAGGACTCA-GACGCCGAGAAGGACGTCA--AGCGGAACG 7995 Query 42655 CGAGGA--CGGTGGTCGAGCGTCAGCTTCAAG-CTGTCCCACATCAACGTCCAGGGGCAG 42711 || | |||||| || ||| ||| | | |||| ||| | ||| ||||| || Sbjct 7996 CGCAGCTGCGGTGGCCGCAGGTCGAGTTCCGGACCGTCC-ACACCGCCGTGCAGGGCGAG 8054 Query 42712 CGCTGCGCCGGCGCGGCGAAGCGAGCCATCGAGGAGTTCGACGCGGACCCGGGCGTGGAC 42771 || || |||| || | |||||| ||| ||||||| ||||||| ||| ||| Sbjct 8055 CGGACCGTGGGCGAGGTCACCGCCGCCATCCTCGAGCTCGACGCCGACCCGGACGTCGAC 8114 Query 42772 GTCATCATCCTGGCCCGCGGCGGCGGC----TCGAAGGAAGACCTCCTCCCGTGGTCCGA 42827 ||||||||| | || ||||| || ||| || | || |||| ||| | ||| Sbjct 8115 GTCATCATCATCGCGCGCGGTGGTGGCGACTTCCA--GA--ACCTGCTCGGCTTCAGCGA 8170 Query 42828 CGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACC---CCGGTTGTGTCTGCGATTGG 42884 ||||| || || || ||||| |||||| || ||| ||| | || || || || || Sbjct 8171 CGAGGGACTCGTCCGGGCCGC---CGCGTCCGCCACCACTCCGATCGTCTCCGCCATCGG 8227 Query 42885 CCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGAC 42944 |||||| || |||||| |||||||| || | ||||| || || | || ||||| Sbjct 8228 GCACGAGGCCGACCGGCCGATCCTCGACGAGGTCGCCGACCTCCGCGCCTCCACCCCGAC 8287 Query 42945 GGATGCAGCGAAACGTGTCGTACCCGACGTG 42975 || || || || || || || || |||||| Sbjct 8288 CGACGCCGCCAAGCGCGTGGTGCCGGACGTG 8318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296022935971216