Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_030901.1
Length=92618
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 232 4e-56
seq63545 208 5e-49
seq63416 131 1e-25
seq63251 104 1e-17
>seq63210
Length=11074
Score = 232 bits (256), Expect = 4e-56
Identities = 777/1197 (65%), Gaps = 82/1197 (7%)
Strand=Plus/Plus
Query 46754 GCTTCGATCCTCGACGACATGACCACACAACAGGCCGGCGAGATCTCGTCGC-TGCCGTT 46812
|| ||||| ||||| || | || || |||||| || || | | |||| |||||||
Sbjct 6752 GCCTCGATGCTCGAGGAGAACACGGAGCAGCAGGCCCGCACGACCGC-TCGCATGCCGTT 6810
Query 46813 CATCCACCCTCACGTCGCTCTGATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTTGG 46872
| | ||| ||| | || || |||||||| || ||| |||| || | |||| ||
Sbjct 6811 CGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCACCGTGGG 6870
Query 46873 CACGGTGATACCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGGTG 46932
| |||| || || || | | ||| | || ||||| || ||||||||||||||||| ||
Sbjct 6871 CTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACATCGGCTG 6930
Query 46933 CGGCATGATCGGCGTCGAAACCTGGGTGCAGAAGAGCGACATCGCAGACCTCAGCCTCGC 46992
||||||||||| ||| ||| | | |||| ||||| | || ||| |||
Sbjct 6931 CGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCT-GCCCACCGA--CCTGCA 6987
Query 46993 GGACCTGCGTGAGCGCGTCGAGATCGCCATCCCGCTCTCGCCGGGGAACTACAACGTCGA 47052
|| || || |||| ||||| ||||||||||| || ||||| | ||| ||
Sbjct 6988 GGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGAACCG-GA 7046
Query 47053 TGGGCGTTGGGCCGCGCACACCGAGGAGCGCATTGCGCGGCTCGAGGCCATGGCCGAAGA 47112
| ||| | || | | ||||| ||||| || ||||||| | ||||| || |
Sbjct 7047 AGATCGTCG--CCAC---CGCCGAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGAGGC 7101
Query 47113 GAAGGGCGTCGACCTCAAGCATTCGC-CGAAG--TGGCGGGAACAGCTGGGTTCGCTCGG 47169
||| |||||| | | ||| || | |||||| | ||||| || |||||||
Sbjct 7102 CGCCGGCTTCGACCCCGCGGGCGCGCACGGCGGGTGGCGGAACCAGCTCGGGACGCTCGG 7161
Query 47170 CGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCACGAGCGTGGACCGGGCGCGAT 47229
|||||||||||||||||| | | || | |||||| ||||| || |
Sbjct 7162 GTCGGGCAACCACTTCATCGAGGTCT------CCCTCGACGAGCA-GGACCAGG-----T 7209
Query 47230 CTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTGGGAAACAAGATCGCGCAGAAGCACAN 47289
|||||| |||||||| ||||| ||||| || || ||||||||||| ||| |||||
Sbjct 7210 CTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACAT 7269
Query 47290 NNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATCCAGCTCGCCAACCCCGACCTGGC 47349
|||| ||| |||| | |||||||||||||
Sbjct 7270 CACGATCGCGAAGAAGGCGATGGAGCGGTGGTGGATCGAGCTGCCGGACCCCGACCTGGC 7329
Query 47350 CTACCTGCCGTCCGGG--ACTGACGAGTTCGGCGACTACATCCGCGAGCTCCGGTGGGCA 47407
||||| |||| || || |||||||| | |||||| |||||| ||||||||
Sbjct 7330 GTACCT--CGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCG 7387
Query 47408 CAGGCTTTCGCGCTCGAGAACCGCGCCGAGATGATGGACCGTTTCGTCCATGTGTTCACC 47467
||| ||||||||| ||||||| |||||||||||||| ||||||
Sbjct 7388 CAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCC----------- 7436
Query 47468 CGGTGGCTCGAGTACTCCGATGCTGTCGAATTCGGCGAGCTCGGGCGCGACGTCGAAGTC 47527
||| || || || ||| || || || || || || || ||
Sbjct 7437 ----GGC---AG--CTGCG-------CGAGGTCATGGA---CGCGCCCGTCGAGGAGCTC 7477
Query 47528 CGGCGAATCAATTGCCACCACAACTACACCGAGCGGGTCGAGATCGCC----GGCAAGAA 47583
||||||||| ||||||||||||| ||| |||| ||||| ||| || |||
Sbjct 7478 GAGCGAATCAACTGCCACCACAACTTCACGCAGCG---CGAGA-CGCACTGGGGGAAGTC 7533
Query 47584 AGTGTGGCTCACACGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGACTGATCCC 47643
|||||| | | || ||||| || ||| | || | | ||| | || ||||||||
Sbjct 7534 CGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCC 7593
Query 47644 CGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGC-CTCT 47702
||| || ||||||||| ||| || |||||| ||| || || || ||| | |||
Sbjct 7594 CGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAAG-CCGTCGCTCG 7652
Query 47703 TCTCTGCGCCCCATGGTGCCGGCCGTCAGTATTCGCGCACCCAGGCCAGGAAGTTGTTCA 47762
|| |||| || |||||||| || | ||| ||||| | ||| || | |||||
Sbjct 7653 AGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCA 7712
Query 47763 CCCTGGATGACCTC--GCCGACCGAATGAAGGGCATCGAATACCGCCACGGTGAGGAGTG 47820
| | || || ||| | || || ||| |||||||| |||||| || || | ||
Sbjct 7713 CGCACGACGAGCTCCGGGCGGCC--ATGGTCGGCATCGAGTACCGCGACACCGACGCGTT 7770
Query 47821 GATTGACGAGATCCCCGACGCCTACAAGGATATCGACCAGGTGATGGAAGACGCCAAGGA 47880
| ||||||||||| | || |||||| |||||||||||||||| |||||| ||
Sbjct 7771 CCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGA 7830
Query 47881 CCTGGTCCAGGTCGA---GGC-CGTGTTGTCGCAGCTCATGAACGTGAAAGGTGTCT 47933
||| || ||||| ||| | | || |||| || | |||||||| |||| ||
Sbjct 7831 CCTCGT----GTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGGTGACT 7883
>seq63545
Length=90175
Score = 208 bits (230), Expect = 5e-49
Identities = 257/346 (74%), Gaps = 4/346 (1%)
Strand=Plus/Minus
Query 70869 GTGGCAAACGACACCGTGATCACCGTGATCGGAAATCTGACCGCCGATCCCGAACTGCGC 70928
||||| ||| ||||| ||||| ||| | || || || ||||| || || || ||||||
Sbjct 74096 GTGGCCGGCGAAACCGTCATCACGGTGGTGGGCAACCTCACCGCGGACCCGGAGCTGCGC 74037
Query 70929 TTCACCCCCT-CGGGCGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTT 70987
| ||| | ||||| ||||| | || ||||||||| |||| |||||| || ||
Sbjct 74036 TACACGCAGAACGGGCTCGCCG-TGGCGAACTTCACCATCGCGTCCACCCCTCGCACGTT 73978
Query 70988 CGACAAGCAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAA-CATCT 71046
|||| ||| | |||||||||||||||| ||| ||||| ||||| || ||| | | | |
Sbjct 73977 CGACCGTCAGGCGAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCG-TGCGAGCGTGT 73919
Query 71047 GGCGCGAGCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCC 71106
|||||||| |||||| |||| | | || ||| | |||||| |||||||||| |
Sbjct 73918 GGCGCGAGTTCGCCGAGCACGTGGCGGGCTCACTGACGAAGGGCTCCCGCGTCATCGCGC 73859
Query 71107 AGGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCG 71166
||||||||||| |||||| |||| || || ||| || | || ||| |||||
Sbjct 73858 AGGGTCGCCTCCGTCAGCGCTCCTACCAGGACCGTGAGGGCCAGCAGCGCACGAGCATCG 73799
Query 71167 AGCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 71212
||||||||||||| |||||||||||| |||| || ||||| |||||
Sbjct 73798 AGCTCGAGGTCGACGAGATCGGCCCCTCGCTCCGCTACGCGACCGC 73753
>seq63416
Length=16760
Score = 131 bits (144), Expect = 1e-25
Identities = 304/449 (68%), Gaps = 12/449 (3%)
Strand=Plus/Plus
Query 68558 CAGGCCCCCGGTCACTCGGGGGCCGATCGTTCGGTGTCGGTCACCGCCATCGAAGGCCAG 68617
||||||||||| ||||||| | || || ||||||||| || | | |||| || |||
Sbjct 12720 CAGGCCCCCGGGCACTCGGCGAAGGACCGGTCGGTGTCGATCCGCTCGGTCGAGGGTCAG 12779
Query 68618 GTGCTCGTCCACTGCTTCTCCGAGCCAACCGACGAGATCCTCGACAAGATCGGCCTCACG 68677
||| |||||| |||||| || || || |||||| | || | ||| |
Sbjct 12780 ACCCTCATCCACTCGCACTCCGACCCGACACCGGACGTCCTCGCCGAGCTGAACCTGTCC 12839
Query 68678 GTGGCGGATCTGTTCGACAACCCCAAGGGTGTCGACTACAGGTACGACGACGGCCGGGTC 68737
|| ||| ||||||||| | | ||||| ||||| |||| |||| |||||||||||
Sbjct 12840 ATGCAGGACCTGTTCGACGAGCAGAAGGGCGTCGAGTACAAGTACCGTGACGGCCGGGTT 12899
Query 68738 GTTCACCGGAGCACCGACAAGAAGTTCTTCCAGCAAGGCAACACCGGTGGCTCCAAGCTC 68797
|| ||||| | |||||||| |||| ||| |||||||| ||| | ||
Sbjct 12900 GTACACCGCTCCCCCGACAAGCGGTTCCGGCAGTCCGGCAACACGAAGGGCCGGGACCTG 12959
Query 68798 TACCGGGCATCGA--AACTGGGTGAAGCCGAGGAGATCTGGTTCGCCGAGGGGGAGAAGG 68855
|||| || |||| | ||| | ||||| | | ||| | | |||||| |||||||
Sbjct 12960 TACC--GCGTCGAGCGGGTCGGTCAGGCCGATCCGGTGTGGATGGTCGAGGGCGAGAAGG 13017
Query 68856 ACGTCCACGCCCTCGAGCGTCTCGGTCTGGTAGCCACGAC-AAACGCCG-GCGGTGC-GG 68912
|||||||||| ||||| || || || || || | | ||| || ||||| ||
Sbjct 13018 ACGTCCACGCACTCGAATCGCTGGGCCTCGTCGC--TGTCTGCACGGCGATGGGTGCTGG 13075
Query 68913 CGA-ACATCAAGAACTTCGACCTCACCCCACTGCACGGCAAGCGACTGGTCATCATTCGC 68971
| | | || | ||||||||| |||| |||||||||||| || || || | |||
Sbjct 13076 CAAGGCGGCA--ATGTTCGACCTCGCCCCGCTGCACGGCAAGAAGGTGCTCCTCGTACGC 13133
Query 68972 GATGACGATGAGGCCGGCATGAAGCATGC 69000
|| || ||| ||||||||||||| ||
Sbjct 13134 GACATGGACGAGCCCGGCATGAAGCACGC 13162
>seq63251
Length=12045
Score = 104 bits (114), Expect = 1e-17
Identities = 264/391 (68%), Gaps = 22/391 (6%)
Strand=Plus/Plus
Query 42596 GCATCGGCCTGATCACCG-CACCGAATAGCGACGCGGAGAAGGACGTGCTCAGCGTCGCG 42654
|||||||||| ||||||| || || | ||||| ||||||||||| |||| ||
Sbjct 7939 GCATCGGCCTCATCACCGGCAAGGACTCA-GACGCCGAGAAGGACGTCA--AGCGGAACG 7995
Query 42655 CGAGGA--CGGTGGTCGAGCGTCAGCTTCAAG-CTGTCCCACATCAACGTCCAGGGGCAG 42711
|| | |||||| || ||| ||| | | |||| ||| | ||| ||||| ||
Sbjct 7996 CGCAGCTGCGGTGGCCGCAGGTCGAGTTCCGGACCGTCC-ACACCGCCGTGCAGGGCGAG 8054
Query 42712 CGCTGCGCCGGCGCGGCGAAGCGAGCCATCGAGGAGTTCGACGCGGACCCGGGCGTGGAC 42771
|| || |||| || | |||||| ||| ||||||| ||||||| ||| |||
Sbjct 8055 CGGACCGTGGGCGAGGTCACCGCCGCCATCCTCGAGCTCGACGCCGACCCGGACGTCGAC 8114
Query 42772 GTCATCATCCTGGCCCGCGGCGGCGGC----TCGAAGGAAGACCTCCTCCCGTGGTCCGA 42827
||||||||| | || ||||| || ||| || | || |||| ||| | |||
Sbjct 8115 GTCATCATCATCGCGCGCGGTGGTGGCGACTTCCA--GA--ACCTGCTCGGCTTCAGCGA 8170
Query 42828 CGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACC---CCGGTTGTGTCTGCGATTGG 42884
||||| || || || ||||| |||||| || ||| ||| | || || || || ||
Sbjct 8171 CGAGGGACTCGTCCGGGCCGC---CGCGTCCGCCACCACTCCGATCGTCTCCGCCATCGG 8227
Query 42885 CCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGAC 42944
|||||| || |||||| |||||||| || | ||||| || || | || |||||
Sbjct 8228 GCACGAGGCCGACCGGCCGATCCTCGACGAGGTCGCCGACCTCCGCGCCTCCACCCCGAC 8287
Query 42945 GGATGCAGCGAAACGTGTCGTACCCGACGTG 42975
|| || || || || || || || ||||||
Sbjct 8288 CGACGCCGCCAAGCGCGTGGTGCCGGACGTG 8318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 296022935971216
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