Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq63210 219 3e-52 seq63545 208 5e-49 seq63416 145 5e-30 seq63251 104 1e-17 >seq63210 Length=11074 Score = 219 bits (242), Expect = 3e-52 Identities = 775/1199 (65%), Gaps = 82/1199 (7%) Strand=Plus/Plus Query 47612 GCATCGATCCTCGACGACATGACCACGCAGCAGGCCGGCGAGATCTCGTCGC-TGCCGTT 47670 || ||||| ||||| || | || |||||||||| || || | | |||| ||||||| Sbjct 6752 GCCTCGATGCTCGAGGAGAACACGGAGCAGCAGGCCCGCACGACCGC-TCGCATGCCGTT 6810 Query 47671 CATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTCGG 47730 | | || ||| | |||||||||||||| || ||| |||| || | |||| || Sbjct 6811 CGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCACCGTGGG 6870 Query 47731 CACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGCTG 47790 | |||| || || || | | ||| | || ||||| || |||||||||||||||||||| Sbjct 6871 CTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACATCGGCTG 6930 Query 47791 CGGCATGATCGGCGTGGAGACCTGGGTCCAGAAGAACGACATCGCAGATCTCAGTCTCGC 47850 ||||||||||| || |||| | || |||| |||| | | | | | | || Sbjct 6931 CGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCTGCC----CACCGACCTGC 6986 Query 47851 -GGACCTGCGCGAACGGGTCGAGATCGCCATCCCGCTCTCGCCGGGGAACTACAACGTCG 47909 || || ||||| | | ||||| ||||||||||| || ||||| | ||| | Sbjct 6987 AGGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGAACCG-G 7045 Query 47910 ATGGGCGTTGGGCCGCGCACACCGAGGAGCGCATTGCGCGGCTCGAGGCCATGGCCGAAG 47969 | | ||| | || | | ||||| ||||| || ||||||| | ||||| || | Sbjct 7046 AAGATCGTCG--CCAC---CGCCGAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGAGG 7100 Query 47970 AGAAGGGCGTCGACCTCAAGCATTCGC-CGAAG--TGGCGGGAACAGCTGGGCTCGCTCG 48026 ||| |||||| | | ||| || | |||||| | ||||| || |||||| Sbjct 7101 CCGCCGGCTTCGACCCCGCGGGCGCGCACGGCGGGTGGCGGAACCAGCTCGGGACGCTCG 7160 Query 48027 GCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCACGAGCGTGGACCGGGCGCGA 48086 | |||||||||||||||||| | | || | |||||| ||||| || Sbjct 7161 GGTCGGGCAACCACTTCATCGAGGTCT------CCCTCGACGAGCA-GGACCAGG----- 7208 Query 48087 TCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTCGGCAACAAGATCGCGCAGAAGCANN 48146 ||||||| |||||||| ||||| ||||| ||||||||||||||||| ||| ||| Sbjct 7209 TCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACA 7268 Query 48147 NNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATTCAACTCGCCAACCCCGACCTCG 48206 |||| || | || | |||||||||| | Sbjct 7269 TCACGATCGCGAAGAAGGCGATGGAGCGGTGGTGGATCGAGCTGCCGGACCCCGACCTGG 7328 Query 48207 CCTACCTGCCTTCCGGGACCGAC-GAATTCGGCGACTACATTCGCGAGCTCCGGTGGGCA 48265 | ||||| | | ||| || | || |||| | ||||| |||||| |||||||| Sbjct 7329 CGTACCT-CGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCG 7387 Query 48266 CAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACCGTTTCGTCCATGTGTTCACC 48325 ||| ||||||||| ||||| | || ||||||||||| |||||| | | Sbjct 7388 CAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCT---- 7443 Query 48326 CGGTGGCTCGAGTACTCCGATGCCGTCGAATTCGACGAGCTCGGTCGCGACGTCGAACTC 48385 || |||| | ||| |||| || || ||| | || ||| Sbjct 7444 -----GCGCGAGGTC----ATG-----------GACGCGCCCG-TCGAG-----GAGCTC 7477 Query 48386 CGGCGTATCAATTGTCACCACAACTACACCGAGCGGGTCGAGATCGCC----GGCAAGAA 48441 ||| ||||| || |||||||||| ||| |||| ||||| ||| || ||| Sbjct 7478 GAGCGAATCAACTGCCACCACAACTTCACGCAGCG---CGAGA-CGCACTGGGGGAAGTC 7533 Query 48442 AGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGACTGATCCC 48501 |||||| | | || ||||| || ||| | || | | ||| | || |||||||| Sbjct 7534 CGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCC 7593 Query 48502 CGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGC-CTCT 48560 ||| || ||||||||| ||| || |||||| ||| || || || ||| | ||| Sbjct 7594 CGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAAG-CCGTCGCTCG 7652 Query 48561 TCTCTGCGCCCCATGGTGCCGGTCGTCAGTATTCGCGCACCCAGGCCAAGAAGCTGTTCA 48620 || |||| || |||||||| || | ||| ||||| | ||| | | ||||| Sbjct 7653 AGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCA 7712 Query 48621 CCCTGGATGACCTC--GCCGACCGAATGAAGGGCATCGAATACCGCCACGGCGAAGAGTG 48678 | | || || ||| | || || ||| |||||||| |||||| || ||| | || Sbjct 7713 CGCACGACGAGCTCCGGGCGGCC--ATGGTCGGCATCGAGTACCGCGACACCGACGCGTT 7770 Query 48679 GATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGGAAGATGCCAAAGA 48738 ||||||||||||||| || |||||| |||||||||||||||| || ||| || Sbjct 7771 CCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGA 7830 Query 48739 CCTGGTCGAAGTCGA---GGCA-GTGCTGTCCCAGCTCATGAACGTGAAAGGTGTCTGA 48793 ||| || ||||| |||| |||| ||| || | |||||||| |||| |||| Sbjct 7831 CCTCGT----GTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGGTGACTGA 7885 >seq63545 Length=90175 Score = 208 bits (230), Expect = 5e-49 Identities = 257/346 (74%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 72298 GTGGCAAACGACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGC 72357 ||||| ||| ||||| ||||| ||| | || ||||| ||||| || || || |||||| Sbjct 74096 GTGGCCGGCGAAACCGTCATCACGGTGGTGGGCAACCTCACCGCGGACCCGGAGCTGCGC 74037 Query 72358 TTCACCCCCT-CGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCCCGGTACTT 72416 | ||| | |||| ||||| | || ||||||||| |||| |||||| || || Sbjct 74036 TACACGCAGAACGGGCTCGCCG-TGGCGAACTTCACCATCGCGTCCACCCCTCGCACGTT 73978 Query 72417 CGACAAGCAGAGCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAA-CATCT 72475 |||| ||| |||||||||||||||| ||| ||||| ||||| || ||| | | | | Sbjct 73977 CGACCGTCAGGCGAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCG-TGCGAGCGTGT 73919 Query 72476 GGCGCGAGCCGGCCGAGAACGTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCC 72535 |||||||| |||||| |||| || | || ||||| |||||| |||||||||| | Sbjct 73918 GGCGCGAGTTCGCCGAGCACGTGGCGGGCTCACTGACGAAGGGCTCCCGCGTCATCGCGC 73859 Query 72536 AGGGACGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCG 72595 |||| |||||| |||||| |||| || || ||| || | || ||| ||||| Sbjct 73858 AGGGTCGCCTCCGTCAGCGCTCCTACCAGGACCGTGAGGGCCAGCAGCGCACGAGCATCG 73799 Query 72596 AGCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72641 ||||||||||||| |||||||||||| |||| || ||||| ||||| Sbjct 73798 AGCTCGAGGTCGACGAGATCGGCCCCTCGCTCCGCTACGCGACCGC 73753 >seq63416 Length=16760 Score = 145 bits (160), Expect = 5e-30 Identities = 305/448 (68%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 69810 CAGGCCCCCGGTCACTCGGGGGCCGATCGTTCGGTGTCGGTCACCGCCATCGAGGGTCAG 69869 ||||||||||| ||||||| | || || ||||||||| || | | ||||||||||| Sbjct 12720 CAGGCCCCCGGGCACTCGGCGAAGGACCGGTCGGTGTCGATCCGCTCGGTCGAGGGTCAG 12779 Query 69870 GTGCTCGTCCACTGCTTCTCCGAGCCAACCGACGAAATCCTCGACAAGATCGGCCTCACG 69929 ||| |||||| |||||| || || || |||||| | || | ||| | Sbjct 12780 ACCCTCATCCACTCGCACTCCGACCCGACACCGGACGTCCTCGCCGAGCTGAACCTGTCC 12839 Query 69930 GTGGCTGATCTGTTCGACAACCCCAAGGGTGTCGACTACAGGTATGACGACGGCCGGGTC 69989 || || ||||||||| | | ||||| ||||| |||| ||| ||||||||||| Sbjct 12840 ATGCAGGACCTGTTCGACGAGCAGAAGGGCGTCGAGTACAAGTACCGTGACGGCCGGGTT 12899 Query 69990 GTTCACCGGAGCACCGACAAGAAGTTCTTCCAGCAGGGCAACACCGGCGGATCCAAGCTG 70049 || ||||| | |||||||| |||| ||| |||||||| || | ||| Sbjct 12900 GTACACCGCTCCCCCGACAAGCGGTTCCGGCAGTCCGGCAACACGAAGGGCCGGGACCTG 12959 Query 70050 TACCGGGCGTCGAAACTGGCCG---ACGCCGAGGAGGTCTGGTTCGCCGAGGGCGAGAAG 70106 |||| |||||| | | || || | ||||| ||| ||| | | ||||||||||||| Sbjct 12960 TACC--GCGTCG-AGCGGGTCGGTCAGGCCGATCCGGTGTGGATGGTCGAGGGCGAGAAG 13016 Query 70107 GATGTCCACGCGCTCGAGCGACTCGGCCTGGTAGCCACCACCAACGCCGGCGGTGC-GGC 70165 || |||||||| ||||| || ||||| || || | || || ||||| ||| Sbjct 13017 GACGTCCACGCACTCGAATCGCTGGGCCTCGTCGCTGTCTGCACGGCGATGGGTGCTGGC 13076 Query 70166 GA-ACATCAAGAACTTCGACCTCACCCCACTGCGCGGCAAGCGACTGGTCATCATTCGCG 70224 | | || | ||||||||| |||| |||| ||||||| || || || | |||| Sbjct 13077 AAGGCGGCA--ATGTTCGACCTCGCCCCGCTGCACGGCAAGAAGGTGCTCCTCGTACGCG 13134 Query 70225 ATGACGACGAAGCCGGCATGAAGCATGC 70252 | ||||| ||||||||||||| || Sbjct 13135 ACATGGACGAGCCCGGCATGAAGCACGC 13162 >seq63251 Length=12045 Score = 104 bits (114), Expect = 1e-17 Identities = 264/391 (68%), Gaps = 22/391 (6%) Strand=Plus/Plus Query 43106 GCATCGGCCTGATCACCG-CACCGAATAGCGACGCGGAGAAGGACGTGCTCAGCGTCGCG 43164 |||||||||| ||||||| || || | ||||| ||||||||||| |||| || Sbjct 7939 GCATCGGCCTCATCACCGGCAAGGACTCA-GACGCCGAGAAGGACGTCA--AGCGGAACG 7995 Query 43165 CGAGGA--CGGTGGTCGAGCGTCAGCTTCAAG-CTGTCCCACATCAACGTCCAGGGGCAG 43221 || | |||||| || ||| ||| | | |||| ||| | ||| ||||| || Sbjct 7996 CGCAGCTGCGGTGGCCGCAGGTCGAGTTCCGGACCGTCC-ACACCGCCGTGCAGGGCGAG 8054 Query 43222 CGCTGCGCCGGCGCGGCGAAGCGAGCCATCGAGGAGTTCGACGCGGACCCGGGCGTGGAC 43281 || || |||| || | |||||| ||| ||||||| ||||||| ||| ||| Sbjct 8055 CGGACCGTGGGCGAGGTCACCGCCGCCATCCTCGAGCTCGACGCCGACCCGGACGTCGAC 8114 Query 43282 GTCATCATCCTGGCCCGCGGCGGCGGC----TCGAAGGAAGACCTCCTCCCGTGGTCCGA 43337 ||||||||| | || ||||| || ||| || | || |||| ||| | ||| Sbjct 8115 GTCATCATCATCGCGCGCGGTGGTGGCGACTTCCA--GA--ACCTGCTCGGCTTCAGCGA 8170 Query 43338 CGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACC---CCGGTTGTGTCTGCGATTGG 43394 ||||| || || || ||||| |||||| || ||| ||| | || || || || || Sbjct 8171 CGAGGGACTCGTCCGGGCCGC---CGCGTCCGCCACCACTCCGATCGTCTCCGCCATCGG 8227 Query 43395 CCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGAC 43454 |||||| || |||||| |||||||| || | ||||| || || | || ||||| Sbjct 8228 GCACGAGGCCGACCGGCCGATCCTCGACGAGGTCGCCGACCTCCGCGCCTCCACCCCGAC 8287 Query 43455 GGATGCAGCGAAACGTGTCGTACCCGACGTG 43485 || || || || || || || || |||||| Sbjct 8288 CGACGCCGCCAAGCGCGTGGTGCCGGACGTG 8318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299939894423616