Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_030941.1 Length=46600 Score E Sequences producing significant alignments: (Bits) Value seq63378 109 2e-19 >seq63378 Length=15302 Score = 109 bits (120), Expect = 2e-19 Identities = 416/637 (65%), Gaps = 46/637 (7%) Strand=Plus/Plus Query 1395 GACGGATGGGACGCGGACGGACAACCCGTCGGACGCCCCTGGTCAGATACCAGGACCCCC 1454 ||||| |||||||| ||||| || ||||||| ||||| ||| || || ||| | Sbjct 2894 GACGGCTGGGACGCCGACGGGCAGCCCGTCGCCCGCCCGTGGATCGACTTCAAGACGATC 2953 Query 1455 ATCGTGAACATCTCGG---CAGTG---TCGGAGGAGCAGGTCGATAACACCTGGTCGCCT 1508 ||| ||| || ||| | | | || || || ||||| | ||||| ||| | || Sbjct 2954 ATC---AACGTCCCGGTCACCGCGACCTCCGATGACCAGGTGCAGAACACGTGGGCACCG 3010 Query 1509 ATGCTCGAGATGCTGCACGAGGACGCAGCGATCCATGAGCACTACCCGGGTCTTGACCCG 1568 |||||||||||| || | ||||| || | ||| | || ||| |||||| Sbjct 3011 ATGCTCGAGATGGCGCGCACCGACGCGCTTGTCAACGAGTTCGAC----GTC--GACCCG 3064 Query 1569 ATGGAAACATTCATTTCGCTGCCGCGCGGCCGAGGTCGAATTGACAAGCTCACCGCGTC- 1627 ||||| || ||||| || | || ||||| || |||| | | || |||| |||| Sbjct 3065 ATGGACACGTTCATCGCGATCCCCGGCGGCA-AGATCGA---GCC--GCGCACCTCGTCC 3118 Query 1628 -GCCGCGTACCGTCAAGGG--TAAGCGCGCCG-TCTTCACCGTCATGGACCAGACGGAGG 1683 |||| || || ||||||| | || || | || | | ||||||||||||| |||| Sbjct 3119 GGCCG-GT-CCATCAAGGGCCTCCCCGGGCAGGTCGCCGCGATCATGGACCAGACCGAGG 3176 Query 1684 AGTGGGTCGAAAGCAACGGCGGCAAGAAGCTCGCTCGTGTGCTTCGGTCGAACGCCGCCA 1743 |||||||| | |||||||||| || || | | || ||| | | | Sbjct 3177 AGTGGGTCAAGGGCAACGGCGGTCTCCGCCTGGCGCAGAACATCCGCAACAACTCGACGA 3236 Query 1744 AGGTCGGCGGTACTGTGCTCGAATCGCCTAACGCGTTCATCCCCGGTGAGAACTCAGTTG 1803 ||| ||| | | |||| || || |||||||||| ||| || |||||||| || | Sbjct 3237 AGGCGTCCGGCATCACGATCGAGTCCCCGAACGCGTTCACCCCTGGCGAGAACTCGGTCG 3296 Query 1804 CAGAGGGCTCAGCGGCTTTCTGGGA--CGAT---ATCCGCG------CCGG---TCGCGT 1849 | |||| || ||| |||||| ||| ||| | | || | ||||| Sbjct 3297 CCGAGGCATCCGCGCGCGACTGGGAGCTGATCGAATCTGGGAAATACCCAGACCTCGCGG 3356 Query 1850 TCGTGACACGTC-CCTGCTGTACGACACACGCGAGGCTCCTCCTGAGACGGACATGTTCG 1908 || | || | | || |||||| ||||| || || | || || ||| || Sbjct 3357 CCG---CCCGCCAGATCCTCTACGACCACCGCGAAGCGCCGGCCGACACCGACCCCGCCG 3413 Query 1909 AGCGTGAGTCGCTGCTCGCCGGGCTCCGTGTGGCGTACGGTGATAGCTCCGGCCATCCTG 1968 | || ||||| ||| ||||||| ||||| |||||||| || ||||| | ||| || | Sbjct 3414 ACCGCGAGTCCCTGATCGCCGGCCTCCGGTACGCGTACGGCGACAGCTCGGACCACCCCG 3473 Query 1969 ACGGCTGCGTGATCCATGATCCGCCGTGCCCGCCGGG 2005 |||||||||| ||||| | ||||||||| ||| || Sbjct 3474 ACGGCTGCGTCATCCACCAGCCGCCGTGCGAGCCCGG 3510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148885755719616