Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq63210 219 3e-52 seq63545 208 5e-49 seq63416 129 4e-25 seq63251 104 1e-17 >seq63210 Length=11074 Score = 219 bits (242), Expect = 3e-52 Identities = 775/1199 (65%), Gaps = 82/1199 (7%) Strand=Plus/Plus Query 48119 GCATCGATCCTCGACGACATGACCACGCAGCAGGCCGGCGAGATCTCGTCGC-TGCCGTT 48177 || ||||| ||||| || | || |||||||||| || || | | |||| ||||||| Sbjct 6752 GCCTCGATGCTCGAGGAGAACACGGAGCAGCAGGCCCGCACGACCGC-TCGCATGCCGTT 6810 Query 48178 CATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTCGG 48237 | | || ||| | |||||||||||||| || ||| |||| || | |||| || Sbjct 6811 CGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCACCGTGGG 6870 Query 48238 CACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGCTG 48297 | |||| || || || | | ||| | || ||||| || |||||||||||||||||||| Sbjct 6871 CTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACATCGGCTG 6930 Query 48298 CGGCATGATCGGCGTGGAGACCTGGGTCCAGAAGAACGACATCGCAGATCTCAGTCTCGC 48357 ||||||||||| || |||| | || |||| |||| | | | | | | || Sbjct 6931 CGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCTGCC----CACCGACCTGC 6986 Query 48358 -GGACCTGCGCGAACGGGTCGAGATCGCCATCCCGCTCTCGCCGGGGAACTACAACGTCG 48416 || || ||||| | | ||||| ||||||||||| || ||||| | ||| | Sbjct 6987 AGGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGAACCG-G 7045 Query 48417 ATGGGCGTTGGGCCGCGCACACCGAGGAGCGCATTGCGCGGCTCGAGGCCATGGCCGAAG 48476 | | ||| | || | | ||||| ||||| || ||||||| | ||||| || | Sbjct 7046 AAGATCGTCG--CCAC---CGCCGAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGAGG 7100 Query 48477 AGAAGGGCGTCGACCTCAAGCATTCGC-CGAAG--TGGCGGGAACAGCTGGGCTCGCTCG 48533 ||| |||||| | | ||| || | |||||| | ||||| || |||||| Sbjct 7101 CCGCCGGCTTCGACCCCGCGGGCGCGCACGGCGGGTGGCGGAACCAGCTCGGGACGCTCG 7160 Query 48534 GCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCACGAGCGTGGACCGGGCGCGA 48593 | |||||||||||||||||| | | || | |||||| ||||| || Sbjct 7161 GGTCGGGCAACCACTTCATCGAGGTCT------CCCTCGACGAGCA-GGACCAGG----- 7208 Query 48594 TCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTCGGCAACAAGATCGCGCAGAAGCANN 48653 ||||||| |||||||| ||||| ||||| ||||||||||||||||| ||| ||| Sbjct 7209 TCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACA 7268 Query 48654 NNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATTCAACTCGCCAACCCCGACCTCG 48713 |||| || | || | |||||||||| | Sbjct 7269 TCACGATCGCGAAGAAGGCGATGGAGCGGTGGTGGATCGAGCTGCCGGACCCCGACCTGG 7328 Query 48714 CCTACCTGCCTTCCGGGACCGAC-GAATTCGGCGACTACATTCGCGAGCTCCGGTGGGCA 48772 | ||||| | | ||| || | || |||| | ||||| |||||| |||||||| Sbjct 7329 CGTACCT-CGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCG 7387 Query 48773 CAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACCGTTTCGTCCATGTGTTCACC 48832 ||| ||||||||| ||||| | || ||||||||||| |||||| | | Sbjct 7388 CAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCT---- 7443 Query 48833 CGGTGGCTCGAGTACTCCGATGCCGTCGAATTCGACGAGCTCGGTCGCGACGTCGAACTC 48892 || |||| | ||| |||| || || ||| | || ||| Sbjct 7444 -----GCGCGAGGTC----ATG-----------GACGCGCCCG-TCGAG-----GAGCTC 7477 Query 48893 CGGCGTATCAATTGTCACCACAACTACACCGAGCGGGTCGAGATCGCC----GGCAAGAA 48948 ||| ||||| || |||||||||| ||| |||| ||||| ||| || ||| Sbjct 7478 GAGCGAATCAACTGCCACCACAACTTCACGCAGCG---CGAGA-CGCACTGGGGGAAGTC 7533 Query 48949 AGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGACTGATCCC 49008 |||||| | | || ||||| || ||| | || | | ||| | || |||||||| Sbjct 7534 CGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCC 7593 Query 49009 CGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGC-CTCT 49067 ||| || ||||||||| ||| || |||||| ||| || || || ||| | ||| Sbjct 7594 CGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAAG-CCGTCGCTCG 7652 Query 49068 TCTCTGCGCCCCATGGTGCCGGCCGTCAGTATTCGCGCACCCAGGCCAAGAAGCTGTTCA 49127 || |||| || |||||||| || | ||| ||||| | ||| | | ||||| Sbjct 7653 AGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCA 7712 Query 49128 CCCTGGATGACCTC--GCCGACCGAATGAAGGGCATCGAATACCGCCACGGCGAAGAGTG 49185 | | || || ||| | || || ||| |||||||| |||||| || ||| | || Sbjct 7713 CGCACGACGAGCTCCGGGCGGCC--ATGGTCGGCATCGAGTACCGCGACACCGACGCGTT 7770 Query 49186 GATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGGAAGATGCCAAAGA 49245 ||||||||||||||| || |||||| |||||||||||||||| || ||| || Sbjct 7771 CCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGA 7830 Query 49246 CCTGGTCGAAGTCGA---GGCA-GTGCTGTCCCAGCTCATGAACGTGAAAGGTGTCTGA 49300 ||| || ||||| |||| |||| ||| || | |||||||| |||| |||| Sbjct 7831 CCTCGT----GTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGGTGACTGA 7885 >seq63545 Length=90175 Score = 208 bits (230), Expect = 5e-49 Identities = 257/346 (74%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 72611 GTGGCAAACGACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGC 72670 ||||| ||| ||||| ||||| ||| | || ||||| ||||| || || || |||||| Sbjct 74096 GTGGCCGGCGAAACCGTCATCACGGTGGTGGGCAACCTCACCGCGGACCCGGAGCTGCGC 74037 Query 72671 TTCACCCCCT-CGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTT 72729 | ||| | |||| ||||| | || ||||||||| |||| |||||| || || Sbjct 74036 TACACGCAGAACGGGCTCGCCG-TGGCGAACTTCACCATCGCGTCCACCCCTCGCACGTT 73978 Query 72730 CGACAAGCAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAA-CATCT 72788 |||| ||| | |||||||||||||||| ||| ||||| ||||| || ||| | | | | Sbjct 73977 CGACCGTCAGGCGAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCG-TGCGAGCGTGT 73919 Query 72789 GGCGCGAGCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCC 72848 |||||||| |||||| |||| | | || ||| | |||||| |||||||||| | Sbjct 73918 GGCGCGAGTTCGCCGAGCACGTGGCGGGCTCACTGACGAAGGGCTCCCGCGTCATCGCGC 73859 Query 72849 AGGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCG 72908 ||||||||||| |||||| |||| || || ||| || | || ||| ||||| Sbjct 73858 AGGGTCGCCTCCGTCAGCGCTCCTACCAGGACCGTGAGGGCCAGCAGCGCACGAGCATCG 73799 Query 72909 AGCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72954 ||||||||||||| |||||||||||| |||| || ||||| ||||| Sbjct 73798 AGCTCGAGGTCGACGAGATCGGCCCCTCGCTCCGCTACGCGACCGC 73753 >seq63416 Length=16760 Score = 129 bits (142), Expect = 4e-25 Identities = 300/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 70123 CAGGCCCCCGGTCACTCGGGGGCCGATCGTTCGGTGTCGGTCACCGCCATCGAAGGTCAG 70182 ||||||||||| ||||||| | || || ||||||||| || | | |||| |||||| Sbjct 12720 CAGGCCCCCGGGCACTCGGCGAAGGACCGGTCGGTGTCGATCCGCTCGGTCGAGGGTCAG 12779 Query 70183 GTGCTCGTCCACTGCTTCTCTGAGCCAACCGAGGAGATCCTCGACAAGATCGGCCTCACG 70242 ||| |||||| ||| || || || ||| |||||| | || | ||| | Sbjct 12780 ACCCTCATCCACTCGCACTCCGACCCGACACCGGACGTCCTCGCCGAGCTGAACCTGTCC 12839 Query 70243 GTGGCGGATCTGTTCGACAACCCCAAGGGTGTCGACTATCGGTACGACGACGGCCGGGTT 70302 || ||| ||||||||| | | ||||| ||||| || |||| |||||||||||| Sbjct 12840 ATGCAGGACCTGTTCGACGAGCAGAAGGGCGTCGAGTACAAGTACCGTGACGGCCGGGTT 12899 Query 70303 GTTCATCGATCCACCGATAAGAAGTTCTTCCAGCAGGGGAACACCGGTGGCTCCAAGCTC 70362 || || || ||| |||| ||| |||| ||| || ||||| ||| | || Sbjct 12900 GTACACCGCTCCCCCGACAAGCGGTTCCGGCAGTCCGGCAACACGAAGGGCCGGGACCTG 12959 Query 70363 TACCGGGCGTCGA--AATTGGGTGAATCCGAGGAAATCTGGTTCGCCGAGGGGGAGAAGG 70420 |||| ||||||| | ||| | |||| | ||| | | |||||| ||||||| Sbjct 12960 TACC--GCGTCGAGCGGGTCGGTCAGGCCGATCCGGTGTGGATGGTCGAGGGCGAGAAGG 13017 Query 70421 ATGTCCACGCCCTCGAGCGCCTCGGCCTGGTAGCCACCACCAACGCCGGCGGTGC-GGCG 70479 | |||||||| ||||| || ||||| || || | || || ||||| ||| Sbjct 13018 ACGTCCACGCACTCGAATCGCTGGGCCTCGTCGCTGTCTGCACGGCGATGGGTGCTGGCA 13077 Query 70480 A-ACATCAAGAACTTCGACCTCACCCCACTGCACGGCAAGCGACTGGTCATCATTCGCGA 70538 | | || | ||||||||| |||| |||||||||||| || || || | ||||| Sbjct 13078 AGGCGGCA--ATGTTCGACCTCGCCCCGCTGCACGGCAAGAAGGTGCTCCTCGTACGCGA 13135 Query 70539 TGACGATGAGGCCGGCATGAAGCATGC 70565 || ||| ||||||||||||| || Sbjct 13136 CATGGACGAGCCCGGCATGAAGCACGC 13162 >seq63251 Length=12045 Score = 104 bits (114), Expect = 1e-17 Identities = 264/391 (68%), Gaps = 22/391 (6%) Strand=Plus/Plus Query 43965 GCATCGGCCTGATCACCG-CACCGAATAGCGACGCGGAGAAGGACGTGCTCAGCGTCGCG 44023 |||||||||| ||||||| || || | ||||| ||||||||||| |||| || Sbjct 7939 GCATCGGCCTCATCACCGGCAAGGACTCA-GACGCCGAGAAGGACGTCA--AGCGGAACG 7995 Query 44024 CGAGGA--CGGTGGTCGAGCGTCAGCTTCAAG-CTGTCCCACATCAACGTCCAGGGGCAG 44080 || | |||||| || ||| ||| | | |||| ||| | ||| ||||| || Sbjct 7996 CGCAGCTGCGGTGGCCGCAGGTCGAGTTCCGGACCGTCC-ACACCGCCGTGCAGGGCGAG 8054 Query 44081 CGCTGCGCCGGCGCGGCGAAGCGAGCCATCGAGGAGTTCGACGCGGACCCGGGCGTGGAC 44140 || || |||| || | |||||| ||| ||||||| ||||||| ||| ||| Sbjct 8055 CGGACCGTGGGCGAGGTCACCGCCGCCATCCTCGAGCTCGACGCCGACCCGGACGTCGAC 8114 Query 44141 GTCATCATCCTGGCCCGCGGCGGCGGC----TCGAAGGAAGACCTCCTCCCGTGGTCCGA 44196 ||||||||| | || ||||| || ||| || | || |||| ||| | ||| Sbjct 8115 GTCATCATCATCGCGCGCGGTGGTGGCGACTTCCA--GA--ACCTGCTCGGCTTCAGCGA 8170 Query 44197 CGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACC---CCGGTTGTGTCTGCGATTGG 44253 ||||| || || || ||||| |||||| || ||| ||| | || || || || || Sbjct 8171 CGAGGGACTCGTCCGGGCCGC---CGCGTCCGCCACCACTCCGATCGTCTCCGCCATCGG 8227 Query 44254 CCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGAC 44313 |||||| || |||||| |||||||| || | ||||| || || | || ||||| Sbjct 8228 GCACGAGGCCGACCGGCCGATCCTCGACGAGGTCGCCGACCTCCGCGCCTCCACCCCGAC 8287 Query 44314 GGATGCAGCGAAACGTGTCGTACCCGACGTG 44344 || || || || || || || || |||||| Sbjct 8288 CGACGCCGCCAAGCGCGTGGTGCCGGACGTG 8318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299437884238288