Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_031029.1
Length=93686
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 219 3e-52
seq63545 208 5e-49
seq63416 129 4e-25
seq63251 104 1e-17
>seq63210
Length=11074
Score = 219 bits (242), Expect = 3e-52
Identities = 775/1199 (65%), Gaps = 82/1199 (7%)
Strand=Plus/Plus
Query 48119 GCATCGATCCTCGACGACATGACCACGCAGCAGGCCGGCGAGATCTCGTCGC-TGCCGTT 48177
|| ||||| ||||| || | || |||||||||| || || | | |||| |||||||
Sbjct 6752 GCCTCGATGCTCGAGGAGAACACGGAGCAGCAGGCCCGCACGACCGC-TCGCATGCCGTT 6810
Query 48178 CATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTCGG 48237
| | || ||| | |||||||||||||| || ||| |||| || | |||| ||
Sbjct 6811 CGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCACCGTGGG 6870
Query 48238 CACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGCTG 48297
| |||| || || || | | ||| | || ||||| || ||||||||||||||||||||
Sbjct 6871 CTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACATCGGCTG 6930
Query 48298 CGGCATGATCGGCGTGGAGACCTGGGTCCAGAAGAACGACATCGCAGATCTCAGTCTCGC 48357
||||||||||| || |||| | || |||| |||| | | | | | | ||
Sbjct 6931 CGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCTGCC----CACCGACCTGC 6986
Query 48358 -GGACCTGCGCGAACGGGTCGAGATCGCCATCCCGCTCTCGCCGGGGAACTACAACGTCG 48416
|| || ||||| | | ||||| ||||||||||| || ||||| | ||| |
Sbjct 6987 AGGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGAACCG-G 7045
Query 48417 ATGGGCGTTGGGCCGCGCACACCGAGGAGCGCATTGCGCGGCTCGAGGCCATGGCCGAAG 48476
| | ||| | || | | ||||| ||||| || ||||||| | ||||| || |
Sbjct 7046 AAGATCGTCG--CCAC---CGCCGAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGAGG 7100
Query 48477 AGAAGGGCGTCGACCTCAAGCATTCGC-CGAAG--TGGCGGGAACAGCTGGGCTCGCTCG 48533
||| |||||| | | ||| || | |||||| | ||||| || ||||||
Sbjct 7101 CCGCCGGCTTCGACCCCGCGGGCGCGCACGGCGGGTGGCGGAACCAGCTCGGGACGCTCG 7160
Query 48534 GCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCACGAGCGTGGACCGGGCGCGA 48593
| |||||||||||||||||| | | || | |||||| ||||| ||
Sbjct 7161 GGTCGGGCAACCACTTCATCGAGGTCT------CCCTCGACGAGCA-GGACCAGG----- 7208
Query 48594 TCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTCGGCAACAAGATCGCGCAGAAGCANN 48653
||||||| |||||||| ||||| ||||| ||||||||||||||||| ||| |||
Sbjct 7209 TCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACA 7268
Query 48654 NNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATTCAACTCGCCAACCCCGACCTCG 48713
|||| || | || | |||||||||| |
Sbjct 7269 TCACGATCGCGAAGAAGGCGATGGAGCGGTGGTGGATCGAGCTGCCGGACCCCGACCTGG 7328
Query 48714 CCTACCTGCCTTCCGGGACCGAC-GAATTCGGCGACTACATTCGCGAGCTCCGGTGGGCA 48772
| ||||| | | ||| || | || |||| | ||||| |||||| ||||||||
Sbjct 7329 CGTACCT-CGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCG 7387
Query 48773 CAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACCGTTTCGTCCATGTGTTCACC 48832
||| ||||||||| ||||| | || ||||||||||| |||||| | |
Sbjct 7388 CAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCT---- 7443
Query 48833 CGGTGGCTCGAGTACTCCGATGCCGTCGAATTCGACGAGCTCGGTCGCGACGTCGAACTC 48892
|| |||| | ||| |||| || || ||| | || |||
Sbjct 7444 -----GCGCGAGGTC----ATG-----------GACGCGCCCG-TCGAG-----GAGCTC 7477
Query 48893 CGGCGTATCAATTGTCACCACAACTACACCGAGCGGGTCGAGATCGCC----GGCAAGAA 48948
||| ||||| || |||||||||| ||| |||| ||||| ||| || |||
Sbjct 7478 GAGCGAATCAACTGCCACCACAACTTCACGCAGCG---CGAGA-CGCACTGGGGGAAGTC 7533
Query 48949 AGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGACTGATCCC 49008
|||||| | | || ||||| || ||| | || | | ||| | || ||||||||
Sbjct 7534 CGTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCC 7593
Query 49009 CGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGC-CTCT 49067
||| || ||||||||| ||| || |||||| ||| || || || ||| | |||
Sbjct 7594 CGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAAG-CCGTCGCTCG 7652
Query 49068 TCTCTGCGCCCCATGGTGCCGGCCGTCAGTATTCGCGCACCCAGGCCAAGAAGCTGTTCA 49127
|| |||| || |||||||| || | ||| ||||| | ||| | | |||||
Sbjct 7653 AGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCA 7712
Query 49128 CCCTGGATGACCTC--GCCGACCGAATGAAGGGCATCGAATACCGCCACGGCGAAGAGTG 49185
| | || || ||| | || || ||| |||||||| |||||| || ||| | ||
Sbjct 7713 CGCACGACGAGCTCCGGGCGGCC--ATGGTCGGCATCGAGTACCGCGACACCGACGCGTT 7770
Query 49186 GATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGGAAGATGCCAAAGA 49245
||||||||||||||| || |||||| |||||||||||||||| || ||| ||
Sbjct 7771 CCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGA 7830
Query 49246 CCTGGTCGAAGTCGA---GGCA-GTGCTGTCCCAGCTCATGAACGTGAAAGGTGTCTGA 49300
||| || ||||| |||| |||| ||| || | |||||||| |||| ||||
Sbjct 7831 CCTCGT----GTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGGTGACTGA 7885
>seq63545
Length=90175
Score = 208 bits (230), Expect = 5e-49
Identities = 257/346 (74%), Gaps = 4/346 (1%)
Strand=Plus/Minus
Query 72611 GTGGCAAACGACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGC 72670
||||| ||| ||||| ||||| ||| | || ||||| ||||| || || || ||||||
Sbjct 74096 GTGGCCGGCGAAACCGTCATCACGGTGGTGGGCAACCTCACCGCGGACCCGGAGCTGCGC 74037
Query 72671 TTCACCCCCT-CGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTT 72729
| ||| | |||| ||||| | || ||||||||| |||| |||||| || ||
Sbjct 74036 TACACGCAGAACGGGCTCGCCG-TGGCGAACTTCACCATCGCGTCCACCCCTCGCACGTT 73978
Query 72730 CGACAAGCAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAA-CATCT 72788
|||| ||| | |||||||||||||||| ||| ||||| ||||| || ||| | | | |
Sbjct 73977 CGACCGTCAGGCGAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCG-TGCGAGCGTGT 73919
Query 72789 GGCGCGAGCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCC 72848
|||||||| |||||| |||| | | || ||| | |||||| |||||||||| |
Sbjct 73918 GGCGCGAGTTCGCCGAGCACGTGGCGGGCTCACTGACGAAGGGCTCCCGCGTCATCGCGC 73859
Query 72849 AGGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCG 72908
||||||||||| |||||| |||| || || ||| || | || ||| |||||
Sbjct 73858 AGGGTCGCCTCCGTCAGCGCTCCTACCAGGACCGTGAGGGCCAGCAGCGCACGAGCATCG 73799
Query 72909 AGCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72954
||||||||||||| |||||||||||| |||| || ||||| |||||
Sbjct 73798 AGCTCGAGGTCGACGAGATCGGCCCCTCGCTCCGCTACGCGACCGC 73753
>seq63416
Length=16760
Score = 129 bits (142), Expect = 4e-25
Identities = 300/447 (67%), Gaps = 8/447 (2%)
Strand=Plus/Plus
Query 70123 CAGGCCCCCGGTCACTCGGGGGCCGATCGTTCGGTGTCGGTCACCGCCATCGAAGGTCAG 70182
||||||||||| ||||||| | || || ||||||||| || | | |||| ||||||
Sbjct 12720 CAGGCCCCCGGGCACTCGGCGAAGGACCGGTCGGTGTCGATCCGCTCGGTCGAGGGTCAG 12779
Query 70183 GTGCTCGTCCACTGCTTCTCTGAGCCAACCGAGGAGATCCTCGACAAGATCGGCCTCACG 70242
||| |||||| ||| || || || ||| |||||| | || | ||| |
Sbjct 12780 ACCCTCATCCACTCGCACTCCGACCCGACACCGGACGTCCTCGCCGAGCTGAACCTGTCC 12839
Query 70243 GTGGCGGATCTGTTCGACAACCCCAAGGGTGTCGACTATCGGTACGACGACGGCCGGGTT 70302
|| ||| ||||||||| | | ||||| ||||| || |||| ||||||||||||
Sbjct 12840 ATGCAGGACCTGTTCGACGAGCAGAAGGGCGTCGAGTACAAGTACCGTGACGGCCGGGTT 12899
Query 70303 GTTCATCGATCCACCGATAAGAAGTTCTTCCAGCAGGGGAACACCGGTGGCTCCAAGCTC 70362
|| || || ||| |||| ||| |||| ||| || ||||| ||| | ||
Sbjct 12900 GTACACCGCTCCCCCGACAAGCGGTTCCGGCAGTCCGGCAACACGAAGGGCCGGGACCTG 12959
Query 70363 TACCGGGCGTCGA--AATTGGGTGAATCCGAGGAAATCTGGTTCGCCGAGGGGGAGAAGG 70420
|||| ||||||| | ||| | |||| | ||| | | |||||| |||||||
Sbjct 12960 TACC--GCGTCGAGCGGGTCGGTCAGGCCGATCCGGTGTGGATGGTCGAGGGCGAGAAGG 13017
Query 70421 ATGTCCACGCCCTCGAGCGCCTCGGCCTGGTAGCCACCACCAACGCCGGCGGTGC-GGCG 70479
| |||||||| ||||| || ||||| || || | || || ||||| |||
Sbjct 13018 ACGTCCACGCACTCGAATCGCTGGGCCTCGTCGCTGTCTGCACGGCGATGGGTGCTGGCA 13077
Query 70480 A-ACATCAAGAACTTCGACCTCACCCCACTGCACGGCAAGCGACTGGTCATCATTCGCGA 70538
| | || | ||||||||| |||| |||||||||||| || || || | |||||
Sbjct 13078 AGGCGGCA--ATGTTCGACCTCGCCCCGCTGCACGGCAAGAAGGTGCTCCTCGTACGCGA 13135
Query 70539 TGACGATGAGGCCGGCATGAAGCATGC 70565
|| ||| ||||||||||||| ||
Sbjct 13136 CATGGACGAGCCCGGCATGAAGCACGC 13162
>seq63251
Length=12045
Score = 104 bits (114), Expect = 1e-17
Identities = 264/391 (68%), Gaps = 22/391 (6%)
Strand=Plus/Plus
Query 43965 GCATCGGCCTGATCACCG-CACCGAATAGCGACGCGGAGAAGGACGTGCTCAGCGTCGCG 44023
|||||||||| ||||||| || || | ||||| ||||||||||| |||| ||
Sbjct 7939 GCATCGGCCTCATCACCGGCAAGGACTCA-GACGCCGAGAAGGACGTCA--AGCGGAACG 7995
Query 44024 CGAGGA--CGGTGGTCGAGCGTCAGCTTCAAG-CTGTCCCACATCAACGTCCAGGGGCAG 44080
|| | |||||| || ||| ||| | | |||| ||| | ||| ||||| ||
Sbjct 7996 CGCAGCTGCGGTGGCCGCAGGTCGAGTTCCGGACCGTCC-ACACCGCCGTGCAGGGCGAG 8054
Query 44081 CGCTGCGCCGGCGCGGCGAAGCGAGCCATCGAGGAGTTCGACGCGGACCCGGGCGTGGAC 44140
|| || |||| || | |||||| ||| ||||||| ||||||| ||| |||
Sbjct 8055 CGGACCGTGGGCGAGGTCACCGCCGCCATCCTCGAGCTCGACGCCGACCCGGACGTCGAC 8114
Query 44141 GTCATCATCCTGGCCCGCGGCGGCGGC----TCGAAGGAAGACCTCCTCCCGTGGTCCGA 44196
||||||||| | || ||||| || ||| || | || |||| ||| | |||
Sbjct 8115 GTCATCATCATCGCGCGCGGTGGTGGCGACTTCCA--GA--ACCTGCTCGGCTTCAGCGA 8170
Query 44197 CGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACC---CCGGTTGTGTCTGCGATTGG 44253
||||| || || || ||||| |||||| || ||| ||| | || || || || ||
Sbjct 8171 CGAGGGACTCGTCCGGGCCGC---CGCGTCCGCCACCACTCCGATCGTCTCCGCCATCGG 8227
Query 44254 CCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACCTTCGAGCGGCAACTCCGAC 44313
|||||| || |||||| |||||||| || | ||||| || || | || |||||
Sbjct 8228 GCACGAGGCCGACCGGCCGATCCTCGACGAGGTCGCCGACCTCCGCGCCTCCACCCCGAC 8287
Query 44314 GGATGCAGCGAAACGTGTCGTACCCGACGTG 44344
|| || || || || || || || ||||||
Sbjct 8288 CGACGCCGCCAAGCGCGTGGTGCCGGACGTG 8318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 299437884238288
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