Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11918 100 4e-16 seq12363 91.5 2e-13 >seq11918 Length=25867 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || |||||||| | ||| ||||||||||| || ||||| || ||| | | || Sbjct 16597 AGTGCCAGCATTAAAGAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 16656 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||| | || | ||||| || ||| || || ||||| || | ||| | ||||| Sbjct 16657 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 16716 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || || || ||||| || |||| | || || || | ||| || |||| | Sbjct 16717 CATGTGTTGTGGCCTTTCTACAATCTTTCCCTGAATCTTTAAGAGGTAAGACCTTTCAAG 16776 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || ||||||||| ||||| ||||| Sbjct 16777 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATAAT 16824 >seq12363 Length=97601 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||||| || |||| |||| | || | | |||||||||||| || Sbjct 63656 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATTGGAATAATTCC 63597 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| ||||||||| ||| | | |||||||| | || Sbjct 63596 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGA 63537 Query 78278 TATCCCTATTCCTCCTGC 78295 || || |||||||| || Sbjct 63536 TACTCCAATTCCTCCAGC 63519 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| | ||||| ||| ||||| || || ||||| ||| ||||||| Sbjct 64170 CTCTCTTTCATACTTCGTATACAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 64111 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 ||| ||| |||| || | || ||||| | |||| | | || |||| || ||||| Sbjct 64110 AGGAGCCTCACTTGGACAAAATAAAGACCATTGCCCAT-TGCTTTGGACTCTTTCCATAA 64052 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | |||||||| | ||| |||||| || ||||||| || | ||| ||||| Sbjct 64051 AAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCTGGCCCGATGCTCTTC 64000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694115982568960