Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq11918 100 4e-16
seq12363 91.5 2e-13
>seq11918
Length=25867
Score = 100 bits (110), Expect = 4e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||| || |||||||| | ||| ||||||||||| || ||||| || ||| | | ||
Sbjct 16597 AGTGCCAGCATTAAAGAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 16656
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517
||||| | || | ||||| || ||| || || ||||| || | ||| | |||||
Sbjct 16657 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 16716
Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577
||| || || || ||||| || |||| | || || || | ||| || |||| |
Sbjct 16717 CATGTGTTGTGGCCTTTCTACAATCTTTCCCTGAATCTTTAAGAGGTAAGACCTTTCAAG 16776
Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625
||||| |||||||| || | || ||||||||| ||||| |||||
Sbjct 16777 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATAAT 16824
>seq12363
Length=97601
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
|||||| || || | ||||| || |||| |||| | || | | |||||||||||| ||
Sbjct 63656 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATTGGAATAATTCC 63597
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
|| ||||| |||||||||||| ||||||||| ||| | | |||||||| | ||
Sbjct 63596 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGA 63537
Query 78278 TATCCCTATTCCTCCTGC 78295
|| || |||||||| ||
Sbjct 63536 TACTCCAATTCCTCCAGC 63519
Score = 87.8 bits (96), Expect = 2e-12
Identities = 124/172 (72%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
|||||||||||| | ||||| ||| ||||| || || ||||| ||| |||||||
Sbjct 64170 CTCTCTTTCATACTTCGTATACAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 64111
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015
||| ||| |||| || | || ||||| | |||| | | || |||| || |||||
Sbjct 64110 AGGAGCCTCACTTGGACAAAATAAAGACCATTGCCCAT-TGCTTTGGACTCTTTCCATAA 64052
Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067
| |||||||| | ||| |||||| || ||||||| || | ||| |||||
Sbjct 64051 AAAGATCAGGCACCCAAAGAGCATAGAAAAGATCTCTGGCCCGATGCTCTTC 64000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694115982568960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |