Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_031035.1
Length=61626
Score E
Sequences producing significant alignments: (Bits) Value
seq63378 149 2e-31
seq63415 98.7 4e-16
>seq63378
Length=15302
Score = 149 bits (164), Expect = 2e-31
Identities = 279/409 (68%), Gaps = 6/409 (1%)
Strand=Plus/Plus
Query 12627 ATCGACGACGCGAAGTTCAAGCTGCAGGGTCTCGGCAACACTGCGGAGCAGG---TGCAG 12683
||||||||||||||| |||||| || ||| || || || | ||| | |
Sbjct 11601 ATCGACGACGCGAAGGGCAAGCTCGCCGGCCTC---AAGACGTCGACGAAGGACATCGCG 11657
Query 12684 TCCATCATGGACAACGCGCTGGCTGCAGTGAAGGGCACGGCGTTCGGGCTCGACGAGGCC 12743
|| |||||||||| ||| ||| | || || || || ||||| |||| ||| ||
Sbjct 11658 TCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCA 11717
Query 12744 GCGACAACGGCAGCGTCCGCGGTGGCCGCCGGAATCAAGCCCGGGCAGCAGTTGACCGAT 12803
|| ||| || ||| || |||||||| ||||||||||| ||| | | || |
Sbjct 11718 GCTGGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAG 11777
Query 12804 TACCTGAAGCTCGTCGGTGATACCGCGGCGATCGCCGGCACGTCGCTGGCTGACATGGGC 12863
||||| |||||| || || | || | ||||| || ||||| | || ||||||
Sbjct 11778 TACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGC 11837
Query 12864 GCGATCTTCAACCGGGTGCAGACGTCGGGCAAGGCGTTCACGGGTGACCTGAACCAGCTC 12923
||||| ||||| | | || ||||||| | ||||| |||| |||||||||
Sbjct 11838 TCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTC 11897
Query 12924 GCCGACCGCGGTTTGCCTGTATTCCAGTGGCTGCAAGAGGAATACGGCGTCAGCGGCGCG 12983
|| ||||| || | || | |||||||||||||| |||| ||||||||| || ||
Sbjct 11898 GCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGAC 11957
Query 12984 AAGCTGTCGAAGATGGTCGAGAAGGGCAAGATTGACGCCGCGACGTTCC 13032
||||| ||| ||||||| | |||||||| | ||| | || || ||||
Sbjct 11958 AAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCC 12006
>seq63415
Length=16791
Score = 98.7 bits (108), Expect = 4e-16
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 852 GGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 910
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 5444 GGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 196932604339584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |