Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031035.1 Length=61626 Score E Sequences producing significant alignments: (Bits) Value seq63378 149 2e-31 seq63415 98.7 4e-16 >seq63378 Length=15302 Score = 149 bits (164), Expect = 2e-31 Identities = 279/409 (68%), Gaps = 6/409 (1%) Strand=Plus/Plus Query 12627 ATCGACGACGCGAAGTTCAAGCTGCAGGGTCTCGGCAACACTGCGGAGCAGG---TGCAG 12683 ||||||||||||||| |||||| || ||| || || || | ||| | | Sbjct 11601 ATCGACGACGCGAAGGGCAAGCTCGCCGGCCTC---AAGACGTCGACGAAGGACATCGCG 11657 Query 12684 TCCATCATGGACAACGCGCTGGCTGCAGTGAAGGGCACGGCGTTCGGGCTCGACGAGGCC 12743 || |||||||||| ||| ||| | || || || || ||||| |||| ||| || Sbjct 11658 TCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCA 11717 Query 12744 GCGACAACGGCAGCGTCCGCGGTGGCCGCCGGAATCAAGCCCGGGCAGCAGTTGACCGAT 12803 || ||| || ||| || |||||||| ||||||||||| ||| | | || | Sbjct 11718 GCTGGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAG 11777 Query 12804 TACCTGAAGCTCGTCGGTGATACCGCGGCGATCGCCGGCACGTCGCTGGCTGACATGGGC 12863 ||||| |||||| || || | || | ||||| || ||||| | || |||||| Sbjct 11778 TACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGC 11837 Query 12864 GCGATCTTCAACCGGGTGCAGACGTCGGGCAAGGCGTTCACGGGTGACCTGAACCAGCTC 12923 ||||| ||||| | | || ||||||| | ||||| |||| ||||||||| Sbjct 11838 TCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTC 11897 Query 12924 GCCGACCGCGGTTTGCCTGTATTCCAGTGGCTGCAAGAGGAATACGGCGTCAGCGGCGCG 12983 || ||||| || | || | |||||||||||||| |||| ||||||||| || || Sbjct 11898 GCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGAC 11957 Query 12984 AAGCTGTCGAAGATGGTCGAGAAGGGCAAGATTGACGCCGCGACGTTCC 13032 ||||| ||| ||||||| | |||||||| | ||| | || || |||| Sbjct 11958 AAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCC 12006 >seq63415 Length=16791 Score = 98.7 bits (108), Expect = 4e-16 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 852 GGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 910 ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 5444 GGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 5502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196932604339584