Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6171 138 2e-27 seq12363 123 4e-23 seq11918 122 1e-22 >seq6171 Length=36435 Score = 138 bits (152), Expect = 2e-27 Identities = 388/596 (65%), Gaps = 0/596 (0%) Strand=Plus/Minus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||||| ||||||||||| || | ||||| ||||| |||||| || || || || || Sbjct 4968 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 4909 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | |||||||||| || || ||||| | ||||||||| | ||| ||| ||| Sbjct 4908 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 4849 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806 || || ||||| ||| || || || || | | ||| || || | | | || Sbjct 4848 AAAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAACCATCG 4789 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | | ||||| | ||||| || | |||||||| || || || || ||| Sbjct 4788 ATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGG 4729 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || | | | ||||| ||| ||| || | || | || | | | ||| ||||| Sbjct 4728 AACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATC 4669 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || ||||| || || ||||| || || || || || || ||| | || |||| || | Sbjct 4668 TCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACC 4609 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || || ||| | || | | | | | ||||| || || || || || ||| Sbjct 4608 TGGACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCA 4549 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 ||||| || | ||||| | || |||| | ||||| ||| || || || | ||||| | Sbjct 4548 AAAAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGA 4489 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 |||| |||| ||| |||||||| | |||||||| || ||| ||||| || Sbjct 4488 CGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTG 4429 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||||| | ||| || | |||| || || || || ||| |||| || ||| || Sbjct 4428 TACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGGTT 4373 >seq12363 Length=97601 Score = 123 bits (136), Expect = 4e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||||| ||||||| |||| | || | | |||||||||||| || Sbjct 63656 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATTGGAATAATTCC 63597 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| ||||||||| ||| |||||||||| | ||| Sbjct 63596 ATTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGA 63537 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || || |||||||| || ||| || | |||||| || | |||||||| || Sbjct 63536 TACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATAT 63477 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||| || |||||||| || ||||| | || || |||||| Sbjct 63476 GCCTTCAATACTATCGTCTTTCATGCATATCAGGAAGCAGCTA 63434 >seq11918 Length=25867 Score = 122 bits (134), Expect = 1e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 |||||| || ||| ||| || ||||| | |||||||||||| | |||| | || | | Sbjct 16156 ACACCCTTTCTTTTGCCACCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGC 16215 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| |||| ||| || || ||||| || ||||||||| ||||||||| ||| ||| Sbjct 16216 AGCATAGGAACAATCCCATTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCA 16275 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 || || || | ||||| ||| ||||| || || ||| || | |||||| Sbjct 16276 CGTATGTTGTGCACAGATACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCC 16335 Query 76916 TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || | || ||||| |||||||| ||||||||||| ||||| | || || |||||| Sbjct 16336 TTAAGAGTATCATATATGCCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 16395 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| || |||||||| | ||| |||||||||||||||||||| || ||| | | || Sbjct 16597 AGTGCCAGCATTAAAGAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 16656 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||| | || || | ||| |||||| || || ||||| |||| || | ||||| Sbjct 16657 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 16716 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || || || | ||||||| |||| | || || || | ||| || |||| | Sbjct 16717 CATGTGTTGTGGCCTTTCTACAATCTTTCCCTGAATCTTTAAGAGGTAAGACCTTTCAAG 16776 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || ||||||||| ||||| ||||| Sbjct 16777 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATAAT 16824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712367046804480