Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq62752 544 5e-150 seq63531 464 4e-126 seq63416 201 7e-47 seq63251 113 3e-20 seq63378 86.0 4e-12 >seq62752 Length=6345 Score = 544 bits (602), Expect = 5e-150 Identities = 936/1340 (70%), Gaps = 67/1340 (5%) Strand=Plus/Minus Query 2570 CTTCGGGCTGCAGGCGTTCATCCAGAAGAACCTCGTGGAGGCCTTCGAGCCGTTCTTCGC 2629 |||||| |||||||||||||||||| |||||| ||||| | | |||||||||||| Sbjct 3002 CTTCGGCCTGCAGGCGTTCATCCAGCGCTCCCTCGTCGAGGCGTGGGCGCCGTTCTTCGC 2943 Query 2630 TGCGGACGAGGACCTGGTGGCCGATCTGTACGTGGAG-CGCGTCACGCAGATCCTCGGGC 2688 || ||||||||| ||| |||| |||| || | || ||| || | | | |||| | Sbjct 2942 CGCCGACGAGGACGAGGTCGCCGGCCTGTTCGAGCAGGCGCTCCAGGGCTA-CTTCGGCC 2884 Query 2689 CGAACACGATCGGTTCCGACCACGTCCGCGCCCTGCACCGGAAGGGCTACCTCCCGCTGC 2748 ||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||| Sbjct 2883 CGAACCACATCGGCACCGACCACGTCCGCGCCCTGCACCGCCTGGGCTACCTGCCGCTCG 2824 Query 2749 GGTTCTGCGCGGTCCCCGAGGGCACCCTGGTACCGATCCGCGTGCCGTCGTTCACGGTCG 2808 | || ||||| | |||||||||||||| | |||||| |||| | | | ||||||| Sbjct 2823 AGATCCGCGCGCTGCCCGAGGGCACCCTCGCTCCGATCGGCGTCGCCACCCTGACGGTCG 2764 Query 2809 AGAACACCGATCCCGAGTTCTTCTGGCTGACCAACTACATCGAGACCGCGCTGTCGGCCG 2868 ||||||||| |||||||||||||||| | ||||||||||||||||| ||||| | || Sbjct 2763 AGAACACCGTCGACGAGTTCTTCTGGCTGCCGAACTACATCGAGACCGCACTGTCTG-CG 2705 Query 2869 GCG-TCTGGCAGGCGTCCACCTCCGCGACGATCGCCCACGAGTACCGCCTGATCCTCGAC 2927 || ||||||| | || || ||| |||| || | |||||||||| || | || Sbjct 2704 TCGATCTGGCACCCCTCGACGGTCGCCACGAAGGCGCTCGAGTACCGCGACCTCATGGAG 2645 Query 2928 CAGGCGGCCGAGGCCACCGGTGGCGCACCCGAGGCCGTGGACTTCCAGTGCCACGACTTC 2987 | ||||| |||||||| | |||| | | | |||||| |||||||||| Sbjct 2644 GACTGGGCCGCCCGCACCGGTGCAGATCCCGCGAGCATCGACTTCGCCGCCCACGACTTC 2585 Query 2988 TCCTACCGCGGGATGTCGTCGCA-GGAGTCGGCCCAGCTGTCCGGCGCGGCCCACCTCCT 3046 || | ||||||| |||| ||| ||||||||| | | ||| || | ||||| || Sbjct 2584 TCGTTCCGCGGGCAGTCG-AGCATCGAGTCGGCCGCGGCGGGCGGTGCCGGACACCTGCT 2526 Query 3047 GTCGTTCAGCGGCACGGACTCCTTGGTCGCCCTGGACTGGATCGACCGGTACTACGGCGG 3106 |||||| |||||| ||||| || | |||| |||| |||||||| |||||| ||| Sbjct 2525 CTCGTTCCTCGGCACCGACTCGATGCCCTCCCTCGACTTCATCGACCGCTACTACCCCGG 2466 Query 3107 CGAGTACGTCGCTGGGTCG--------GTGCCGGCGACGGAGCACTCGGTGATGTGC--A 3156 ||| ||| ||||||| | || || ||||| |||||| || |||||| Sbjct 2465 CGACAACG--GCTGGGTGGCGGCGAGCGTCCCCGCGACCGAGCACAGCGTCATGTGCGTC 2408 Query 3157 CG-GGCATCGAGAAGATCGGGGAGCAGCAGCTGTTCTCCCGGCTGCTCGACCTGTATCCG 3215 || ||| ||| ||| |||| | || ||| | | | | |||||| |||| ||| Sbjct 2407 CGCGGCGCCGA------CGGCGAGCTGGAGACCTTCGCGCAGATCCTCGACGTGTACCCG 2354 Query 3216 ACTGGCATCTTCTCCGTCGTCTCGGACACCTTCGACCTGTGGCGAGTGCTCATCGAGTTC 3275 || |||||| |||| | || ||| ||||||||||| || |||| |||| Sbjct 2353 ACGGGCATCGTCTCGGCGGTGAGCGACGGCTTCGACCTGTTCAAGGTCCTCACCGAGACG 2294 Query 3276 CTGCCGGTGCTCAGCGATAAGATCCTCCGGCGCGACGGCAAACTGGTCATCCGGCCGGAC 3335 || ||| ||||| || ||| | ||||||||||| || |||||||| |||||| Sbjct 2293 CTCCCGCAGCTCAAGGACCGCATCACCGCCCGCGACGGCAAGCTCGTCATCCGTCCGGAC 2234 Query 3336 TCGGGTGACCCGGAAAAAATCATC----------TG--CGGCGACCCCG----CGAGCT- 3378 ||||| ||||||| | ||| || || ||||| ||||| |||||| Sbjct 2233 TCGGGCGACCCGGTCGACATCGTCACCGGCACCGTGCACGGCGTCCCCGAGGCCGAGCTC 2174 Query 3379 --------CGG--ACTGGCGCGAGCGGATGGGCGTCGTGAAGCTGCTCGACCTTGAG--- 3425 ||| | | | |||| || ||||||||| | || |||||| ||| Sbjct 2173 ACCGCGCCCGGTCGCAGCCACGAGGAGAAGGGCGTCGTCGAACTCCTCGAC---GAGCTC 2117 Query 3426 TTCGGCTCCACGGTCAATGAGGCAGGG-TTCCGCGAGCTCGACCCGCACGTGGGTGTGAT 3484 |||||| ||||||||| || ||||| ||| | |||||||| |||| | || || || Sbjct 2116 TTCGGCCACACGGTCAACGA-CCAGGGCTTCAAGGTGCTCGACCAGCACATCGGCGTCAT 2058 Query 3485 CTACGGCGATTCGATCACCCTGAATCGGGCGGCGTC-GATCACCGGTCGGCTCGCTGAGA 3543 ||||||||| |||||||| | || || || | |||| || || ||||| | || Sbjct 2057 CTACGGCGACAGCATCACCCTCGACCGTGC-CCGCCGGATCTACGAGCGCCTCGCCGCGA 1999 Query 3544 TGGGTTACGCGTCCACGAACGTCGTTTTCGGCGTCGGCTCGTACACGTACCAGTACAACA 3603 ||| ||| || | ||| |||| ||||| |||| ||||||||||||||||||| | Sbjct 1998 AGGGCTACTCGAGCGACAACATCGTGCTCGGCATCGGGTCGTACACGTACCAGTACATGA 1939 Query 3604 CCCGGGACACGTTCGGCAGCGCCATGAAGGCCACGTGGGCCGAGGTGGACGGTGAGGGCG 3663 | ||||||| ||||||||||| |||||||||| ||||| ||| ||||| ||| || Sbjct 1938 CGCGGGACAACCTCGGCAGCGCCGTGAAGGCCACCTGGGCACTGGTCGACGGCGAGCCCG 1879 Query 3664 TGAACCTGCTCAAGGACCCGATCACCGACGACGGAACGAAGCGCTCGGCCACAGGCCGCC 3723 | || | | |||||||||| |||| | ||| | |||| || |||| |||||| Sbjct 1878 TCGACATCCAGAAGGACCCGAAGACCGGCAGCGGCAAGAAGAGC---GCCAAGGGCCGCA 1822 Query 3724 TGGCGGTGCTCAGTGACGACGACGGGCG-CATCGCACTGATGGAGAAGGCCCCGGCTGAC 3782 | || ||| | | ||||| | |||||| ||| | || || |||| | || ||| Sbjct 1821 TCGCCCTGCACCGCGACGA-GTCGGGCGAGATCCGGCAGACCGACCAGGCGACCGCCGAC 1763 Query 3783 ATGGAGGCGCTGAGCCTGCTCCAGCCCGTCTGGGAGGACGGCAAGTTCGTGCGCCGGCAG 3842 |||||| |||||||||||||| || |||| ||||| ||| ||||| ||| Sbjct 1762 GACGAGGCGACCAGCCTGCTCCAGCCGGTGTGGGTCGACGGACGCTTCACGCGCCTCCAG 1703 Query 3843 ACCTTCGCCGAGGTGCGCGA 3862 | |||||||| || ||||| Sbjct 1702 TCGTTCGCCGACGTCCGCGA 1683 Score = 118 bits (130), Expect = 6e-22 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 2172 CCTCGTGGTCGACGACATCTGCGACGGCGGGGGCACCTTCATGGGCCTCGCCGACGCAAC 2231 |||||| ||||||||||||||||||||||| |||||||||||||||||||| | | || Sbjct 3460 CCTCGTCGTCGACGACATCTGCGACGGCGGTGGCACCTTCATGGGCCTCGCGGGCTGCAC 3401 Query 2232 CGGCCTGGATCGGGACCGCCTATCCCTCTGGGTCACCCACGGCATCTTCTCGGGCGCGAG 2291 ||||||| ||| ||||| |||||||||| | |||||| ||||||| ||| | Sbjct 3400 CGGCCTGCCGAAGGAGCGCCTGGGCCTCTGGGTCTCGCACGGCGTCTTCTCCGGCCGGGC 3341 Query 2292 CTCGCAGCTGTGGGAGAAGTTCAAGGCGATCTACACCACCGAC 2334 | | ||||| || | ||| | |||| |||||||||| Sbjct 3340 CGCACAGCTCGCCGACCACTTCGGCGAGATCGTCACCACCGAC 3298 >seq63531 Length=42858 Score = 464 bits (514), Expect = 4e-126 Identities = 589/801 (74%), Gaps = 12/801 (1%) Strand=Plus/Minus Query 781 GACACCCTACGAAGACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCG 840 ||| ||||||||||||||| | ||| | || || ||| | |||||| ||| || Sbjct 32489 GACTCCCTACGAAGACCTGCTCCGCCGGGTGCTCGAAGAAGGCGCGCCGAAGGGTGACCG 32430 Query 841 CACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGG 900 ||||||||||||||||| ||| |||||| || ||||| || |||||||| | |||| Sbjct 32429 CACCGGCACCGGCACGCGCAGCCTGTTCGGTGCGCAGCTCCGCTACGACCTGTCGAAGGG 32370 Query 901 CTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTG 960 ||||||||| |||| || |||||||| |||||||| ||||| |||||||| || ||||| Sbjct 32369 CTTCCCGCTCATCACGACCAAGCGCGTGCACTTCAAGTCGGTCGCGTACGAGCTGCTGTG 32310 Query 961 GTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGA 1020 ||||||| | |||||| |||| ||| | || |||||||| ||||||| | Sbjct 32309 GTTCCTCCGCGGCGACGGCAACGCCCGCTGGCTGCAGGAGCACGGCGTCCGCATCTGGAA 32250 Query 1021 CGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGCACTG 1080 ||||||||| |||| | ||| ||||||| || || ||||||| ||||||||| || Sbjct 32249 CGAGTGGGCGGACGAGGACGGCGACCTCGGCCCGGTGTACGGCGTGCAGTGGCGTTCGTG 32190 Query 1081 GCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGGAGCTGCT 1140 || | | | ||| || | || ||||||||| | | | | |||| | | Sbjct 32189 GCC-GACCCCGTCGGGCGAGCAC-----ATCGACCAGATCGCCCAGGTCATCGAGCAGAT 32136 Query 1141 TCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCAG 1200 || |||| ||||| |||||| | | || || || |||||||||| || | Sbjct 32135 CCGGACCAACCCGGACTCCCGCCGGCTCATCGTCTCGGCGTGGAACGTCGCCGAGGTGCC 32076 Query 1201 CGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCT 1260 ||| ||||| || |||||||||| | |||||| | ||||| ||||||| ||| Sbjct 32075 CGAGATGGCGCTGGCCCCGTGCCACGCGTTCTTCCAGTTCCACGTCAACGACGGCAAGCT 32016 Query 1261 CTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGC 1320 |||| ||| | |||||||| ||||||||||||||||||||||| |||||||| ||||| Sbjct 32015 CTCGTGCCAGCTGTACCAGCGGAGCGCGGACATGTTCCTCGGTGTCCCGTTCAACATCGC 31956 Query 1321 CTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCT 1380 |||||||||||| || | |||||| ||||| |||| |||| || ||| || || | Sbjct 31955 CTCGTACGCGCTGCTGACCCACATGATCGCGGCGCAGACCGGGCTCGAGGTCGGCGACTT 31896 Query 1381 GATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGG-CGCTGATGC 1439 | |||||||| |||||||||||| ||||| ||||||||||||| |||| || || || Sbjct 31895 CGTGTGGACCGGTGGCGACTGCCACGTCTACGACAACCACGTCGAGCAGGTCGAGGA-GC 31837 Query 1440 AGCT-CCGCCGACGACCGCGGCCCTACCCGAGGCTCGTGCT-ACACCACGCGCCGTCGAT 1497 |||| ||| ||| | || || ||||| ||||| ||| |||| |||| | ||||| Sbjct 31836 AGCTGACGCGCACGCCGTACGCGCT-CCCGACGCTCGAGCTCGCACCCCGCGAC-TCGAT 31779 Query 1498 CTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCCGTCGATCAA 1557 | ||||||| ||||||| || || | |||| |||| ||| |||||| ||||||| Sbjct 31778 CGACGACTACGAGTACGAGGACTTCACCGTCGTCGGCTACCACCACCACCCGGCGATCAA 31719 Query 1558 GGCGCCGGTGGCCGTCTGATG 1578 ||| |||| ||||||||||| Sbjct 31718 GGCCGCGGTCGCCGTCTGATG 31698 >seq63416 Length=16760 Score = 201 bits (222), Expect = 7e-47 Identities = 297/421 (71%), Gaps = 0/421 (0%) Strand=Plus/Minus Query 58572 TGTCGCGGACGATCACCACCCGGCGGCCGAAGAGGGGGGACCAGTCGAACATCTTCGCCT 58631 ||||||| |||| | |||| |||| || |||| ||||||||| ||||| Sbjct 13137 TGTCGCGTACGAGGAGCACCTTCTTGCCGTGCAGCGGGGCGAGGTCGAACATTGCCGCCT 13078 Query 58632 TGCCGGCGCCCATTGCGGTCGACACCGCGGTGACGCCGCTGGCCTCCAGGGCGTGCACGT 58691 |||| || ||||| || || | || ||| || ||| | || || ||||| |||| Sbjct 13077 TGCCAGCACCCATCGCCGTGCAGACAGCGACGAGGCCCAGCGATTCGAGTGCGTGGACGT 13018 Query 58692 CCTTCTCGCCCTCGACCACGTAGACCGTATCCGCGTCGCCGAGGCGTTCTACCCGGTAGA 58751 |||||||||||||||||| | |||| ||| || | |||| || || || ||||| | Sbjct 13017 CCTTCTCGCCCTCGACCATCCACACCGGATCGGCCTGACCGACCCGCTCGACGCGGTACA 12958 Query 58752 GCTGGTCGCCCTTGGTGTTTCCGGACTGGCGGAAGTCCTTGCCGGGTGAGCGGTGCACCC 58811 | | |||||| ||||| |||||||| ||||| |||| |||| |||||||| || Sbjct 12957 GGTCCCGGCCCTTCGTGTTGCCGGACTGCCGGAACCGCTTGTCGGGGGAGCGGTGTACAA 12898 Query 58812 GCCGGCCGTCGGAGTACTTGTACTCGACCCCACGGTCCGAGTCGAAGAGATCCTTCATCT 58871 ||||||||| ||||||||||||||| || | | |||||| || |||| ||| Sbjct 12897 CCCGGCCGTCACGGTACTTGTACTCGACGCCCTTCTGCTCGTCGAACAGGTCCTGCATGG 12838 Query 58872 CCAGGCCGAGGCGTTCGAGGACGACCTCGGTCTCGTCGGAGTGTGAGTGGATCAGGACCT 58931 |||| || |||||||| || ||| ||||||||| |||||||| ||| || Sbjct 12837 ACAGGTTCAGCTCGGCGAGGACGTCCGGTGTCGGGTCGGAGTGCGAGTGGATGAGGGTCT 12778 Query 58932 GGCCGCCGATGTCGGTGATCGTTACCGATCGGTCCTGGGTCGAGTGGCCGGGGGCCTGTG 58991 | || ||| | ||||| ||||| ||||||| | |||||| ||||||||||| | Sbjct 12777 GACCCTCGACCGAGCGGATCGACACCGACCGGTCCTTCGCCGAGTGCCCGGGGGCCTGCG 12718 Query 58992 C 58992 | Sbjct 12717 C 12717 >seq63251 Length=12045 Score = 113 bits (124), Expect = 3e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 41814 TTCAGCGGCGAGAAGATCGTGCGCGCCGCGATCTCCTGCACCACGCCTGTCGTCTCGGCC 41873 ||||||| |||| |||| || ||||| ||| |||||| || ||||||| ||| Sbjct 8163 TTCAGCGACGAGGGACTCGTCCGGGCCGCCGCGTCCGCCACCACTCCGATCGTCTCCGCC 8222 Query 41874 ATCGGCCACGAGCCTGACAATCCCGTCCTGGACGACGTCGCCGACTTCCGAGCCGCAACA 41933 ||||| |||||| | ||| || |||| ||||| ||||||||| |||| ||| | || Sbjct 8223 ATCGGGCACGAGGCCGACCGGCCGATCCTCGACGAGGTCGCCGACCTCCGCGCCTCCACC 8282 Query 41934 CCGACCGACGCCGCGAAGAACGTCGTGCCCGACATGGTCG 41973 |||||||||||||| ||| ||| ||||| ||| ||| || Sbjct 8283 CCGACCGACGCCGCCAAGCGCGTGGTGCCGGACGTGGCCG 8322 >seq63378 Length=15302 Score = 86.0 bits (94), Expect = 4e-12 Identities = 165/236 (70%), Gaps = 27/236 (11%) Strand=Plus/Plus Query 7220 CTCGGATTCGACGGATCA------CGGAAGCGCCGCAAGGGCGTCACGGACTCCACGGCC 7273 ||||| |||||||| || || |||| | |||||||| | ||||| |||| | Sbjct 3689 CTCGGCTTCGACGGCTCCGAGGGGCGCAAGCCCGGCAAGGGCACTGCCGACTCGACGGTC 3748 Query 7274 CTCATCGGCTGCCGCGTCA---AGGATGGCGCGATCTTCGAGATCGAGGTCTGGGAGCAG 7330 ||||| |||| | ||||| || | || | ||||| || ||| |||||||||||| Sbjct 3749 CTCATTGGCTACTCCGTCACCCAGAA--GCACC-TCTTCAAGGTCGGCGTCTGGGAGCAG 3805 Query 7331 CCCT-CGGAGTGGCGAAGCAGCGAGGGCTGGGAGGTCGAC-ACCGG-CGTCG---TCGAC 7384 ||| |||| || | ||||||||||| |||| ||||| | ||| |||| Sbjct 3806 CCCGACGGACCTGC----CGGCGAGGGCTGG-----CGACCACCGGTCCTCGAGATCGAG 3856 Query 7385 CTGAAGATCCGCCAGACCTTCAAGAAGTACCGCGTCGTCGGCTTCTACGCCGACCC 7440 | ||||| ||| | |||||| | ||| ||||||||| |||||||||||||| Sbjct 3857 GCGGCCATCCGGCAGGCGTTCAAGGACTACAACGTCGTCGGGTTCTACGCCGACCC 3912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295901430321264