Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_031074.1
Length=92580
Score E
Sequences producing significant alignments: (Bits) Value
seq62752 544 5e-150
seq63531 464 4e-126
seq63416 201 7e-47
seq63251 113 3e-20
seq63378 86.0 4e-12
>seq62752
Length=6345
Score = 544 bits (602), Expect = 5e-150
Identities = 936/1340 (70%), Gaps = 67/1340 (5%)
Strand=Plus/Minus
Query 2570 CTTCGGGCTGCAGGCGTTCATCCAGAAGAACCTCGTGGAGGCCTTCGAGCCGTTCTTCGC 2629
|||||| |||||||||||||||||| |||||| ||||| | | ||||||||||||
Sbjct 3002 CTTCGGCCTGCAGGCGTTCATCCAGCGCTCCCTCGTCGAGGCGTGGGCGCCGTTCTTCGC 2943
Query 2630 TGCGGACGAGGACCTGGTGGCCGATCTGTACGTGGAG-CGCGTCACGCAGATCCTCGGGC 2688
|| ||||||||| ||| |||| |||| || | || ||| || | | | |||| |
Sbjct 2942 CGCCGACGAGGACGAGGTCGCCGGCCTGTTCGAGCAGGCGCTCCAGGGCTA-CTTCGGCC 2884
Query 2689 CGAACACGATCGGTTCCGACCACGTCCGCGCCCTGCACCGGAAGGGCTACCTCCCGCTGC 2748
||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2883 CGAACCACATCGGCACCGACCACGTCCGCGCCCTGCACCGCCTGGGCTACCTGCCGCTCG 2824
Query 2749 GGTTCTGCGCGGTCCCCGAGGGCACCCTGGTACCGATCCGCGTGCCGTCGTTCACGGTCG 2808
| || ||||| | |||||||||||||| | |||||| |||| | | | |||||||
Sbjct 2823 AGATCCGCGCGCTGCCCGAGGGCACCCTCGCTCCGATCGGCGTCGCCACCCTGACGGTCG 2764
Query 2809 AGAACACCGATCCCGAGTTCTTCTGGCTGACCAACTACATCGAGACCGCGCTGTCGGCCG 2868
||||||||| |||||||||||||||| | ||||||||||||||||| ||||| | ||
Sbjct 2763 AGAACACCGTCGACGAGTTCTTCTGGCTGCCGAACTACATCGAGACCGCACTGTCTG-CG 2705
Query 2869 GCG-TCTGGCAGGCGTCCACCTCCGCGACGATCGCCCACGAGTACCGCCTGATCCTCGAC 2927
|| ||||||| | || || ||| |||| || | |||||||||| || | ||
Sbjct 2704 TCGATCTGGCACCCCTCGACGGTCGCCACGAAGGCGCTCGAGTACCGCGACCTCATGGAG 2645
Query 2928 CAGGCGGCCGAGGCCACCGGTGGCGCACCCGAGGCCGTGGACTTCCAGTGCCACGACTTC 2987
| ||||| |||||||| | |||| | | | |||||| ||||||||||
Sbjct 2644 GACTGGGCCGCCCGCACCGGTGCAGATCCCGCGAGCATCGACTTCGCCGCCCACGACTTC 2585
Query 2988 TCCTACCGCGGGATGTCGTCGCA-GGAGTCGGCCCAGCTGTCCGGCGCGGCCCACCTCCT 3046
|| | ||||||| |||| ||| ||||||||| | | ||| || | ||||| ||
Sbjct 2584 TCGTTCCGCGGGCAGTCG-AGCATCGAGTCGGCCGCGGCGGGCGGTGCCGGACACCTGCT 2526
Query 3047 GTCGTTCAGCGGCACGGACTCCTTGGTCGCCCTGGACTGGATCGACCGGTACTACGGCGG 3106
|||||| |||||| ||||| || | |||| |||| |||||||| |||||| |||
Sbjct 2525 CTCGTTCCTCGGCACCGACTCGATGCCCTCCCTCGACTTCATCGACCGCTACTACCCCGG 2466
Query 3107 CGAGTACGTCGCTGGGTCG--------GTGCCGGCGACGGAGCACTCGGTGATGTGC--A 3156
||| ||| ||||||| | || || ||||| |||||| || ||||||
Sbjct 2465 CGACAACG--GCTGGGTGGCGGCGAGCGTCCCCGCGACCGAGCACAGCGTCATGTGCGTC 2408
Query 3157 CG-GGCATCGAGAAGATCGGGGAGCAGCAGCTGTTCTCCCGGCTGCTCGACCTGTATCCG 3215
|| ||| ||| ||| |||| | || ||| | | | | |||||| |||| |||
Sbjct 2407 CGCGGCGCCGA------CGGCGAGCTGGAGACCTTCGCGCAGATCCTCGACGTGTACCCG 2354
Query 3216 ACTGGCATCTTCTCCGTCGTCTCGGACACCTTCGACCTGTGGCGAGTGCTCATCGAGTTC 3275
|| |||||| |||| | || ||| ||||||||||| || |||| ||||
Sbjct 2353 ACGGGCATCGTCTCGGCGGTGAGCGACGGCTTCGACCTGTTCAAGGTCCTCACCGAGACG 2294
Query 3276 CTGCCGGTGCTCAGCGATAAGATCCTCCGGCGCGACGGCAAACTGGTCATCCGGCCGGAC 3335
|| ||| ||||| || ||| | ||||||||||| || |||||||| ||||||
Sbjct 2293 CTCCCGCAGCTCAAGGACCGCATCACCGCCCGCGACGGCAAGCTCGTCATCCGTCCGGAC 2234
Query 3336 TCGGGTGACCCGGAAAAAATCATC----------TG--CGGCGACCCCG----CGAGCT- 3378
||||| ||||||| | ||| || || ||||| ||||| ||||||
Sbjct 2233 TCGGGCGACCCGGTCGACATCGTCACCGGCACCGTGCACGGCGTCCCCGAGGCCGAGCTC 2174
Query 3379 --------CGG--ACTGGCGCGAGCGGATGGGCGTCGTGAAGCTGCTCGACCTTGAG--- 3425
||| | | | |||| || ||||||||| | || |||||| |||
Sbjct 2173 ACCGCGCCCGGTCGCAGCCACGAGGAGAAGGGCGTCGTCGAACTCCTCGAC---GAGCTC 2117
Query 3426 TTCGGCTCCACGGTCAATGAGGCAGGG-TTCCGCGAGCTCGACCCGCACGTGGGTGTGAT 3484
|||||| ||||||||| || ||||| ||| | |||||||| |||| | || || ||
Sbjct 2116 TTCGGCCACACGGTCAACGA-CCAGGGCTTCAAGGTGCTCGACCAGCACATCGGCGTCAT 2058
Query 3485 CTACGGCGATTCGATCACCCTGAATCGGGCGGCGTC-GATCACCGGTCGGCTCGCTGAGA 3543
||||||||| |||||||| | || || || | |||| || || ||||| | ||
Sbjct 2057 CTACGGCGACAGCATCACCCTCGACCGTGC-CCGCCGGATCTACGAGCGCCTCGCCGCGA 1999
Query 3544 TGGGTTACGCGTCCACGAACGTCGTTTTCGGCGTCGGCTCGTACACGTACCAGTACAACA 3603
||| ||| || | ||| |||| ||||| |||| ||||||||||||||||||| |
Sbjct 1998 AGGGCTACTCGAGCGACAACATCGTGCTCGGCATCGGGTCGTACACGTACCAGTACATGA 1939
Query 3604 CCCGGGACACGTTCGGCAGCGCCATGAAGGCCACGTGGGCCGAGGTGGACGGTGAGGGCG 3663
| ||||||| ||||||||||| |||||||||| ||||| ||| ||||| ||| ||
Sbjct 1938 CGCGGGACAACCTCGGCAGCGCCGTGAAGGCCACCTGGGCACTGGTCGACGGCGAGCCCG 1879
Query 3664 TGAACCTGCTCAAGGACCCGATCACCGACGACGGAACGAAGCGCTCGGCCACAGGCCGCC 3723
| || | | |||||||||| |||| | ||| | |||| || |||| ||||||
Sbjct 1878 TCGACATCCAGAAGGACCCGAAGACCGGCAGCGGCAAGAAGAGC---GCCAAGGGCCGCA 1822
Query 3724 TGGCGGTGCTCAGTGACGACGACGGGCG-CATCGCACTGATGGAGAAGGCCCCGGCTGAC 3782
| || ||| | | ||||| | |||||| ||| | || || |||| | || |||
Sbjct 1821 TCGCCCTGCACCGCGACGA-GTCGGGCGAGATCCGGCAGACCGACCAGGCGACCGCCGAC 1763
Query 3783 ATGGAGGCGCTGAGCCTGCTCCAGCCCGTCTGGGAGGACGGCAAGTTCGTGCGCCGGCAG 3842
|||||| |||||||||||||| || |||| ||||| ||| ||||| |||
Sbjct 1762 GACGAGGCGACCAGCCTGCTCCAGCCGGTGTGGGTCGACGGACGCTTCACGCGCCTCCAG 1703
Query 3843 ACCTTCGCCGAGGTGCGCGA 3862
| |||||||| || |||||
Sbjct 1702 TCGTTCGCCGACGTCCGCGA 1683
Score = 118 bits (130), Expect = 6e-22
Identities = 124/163 (76%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 2172 CCTCGTGGTCGACGACATCTGCGACGGCGGGGGCACCTTCATGGGCCTCGCCGACGCAAC 2231
|||||| ||||||||||||||||||||||| |||||||||||||||||||| | | ||
Sbjct 3460 CCTCGTCGTCGACGACATCTGCGACGGCGGTGGCACCTTCATGGGCCTCGCGGGCTGCAC 3401
Query 2232 CGGCCTGGATCGGGACCGCCTATCCCTCTGGGTCACCCACGGCATCTTCTCGGGCGCGAG 2291
||||||| ||| ||||| |||||||||| | |||||| ||||||| ||| |
Sbjct 3400 CGGCCTGCCGAAGGAGCGCCTGGGCCTCTGGGTCTCGCACGGCGTCTTCTCCGGCCGGGC 3341
Query 2292 CTCGCAGCTGTGGGAGAAGTTCAAGGCGATCTACACCACCGAC 2334
| | ||||| || | ||| | |||| ||||||||||
Sbjct 3340 CGCACAGCTCGCCGACCACTTCGGCGAGATCGTCACCACCGAC 3298
>seq63531
Length=42858
Score = 464 bits (514), Expect = 4e-126
Identities = 589/801 (74%), Gaps = 12/801 (1%)
Strand=Plus/Minus
Query 781 GACACCCTACGAAGACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCG 840
||| ||||||||||||||| | ||| | || || ||| | |||||| ||| ||
Sbjct 32489 GACTCCCTACGAAGACCTGCTCCGCCGGGTGCTCGAAGAAGGCGCGCCGAAGGGTGACCG 32430
Query 841 CACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGG 900
||||||||||||||||| ||| |||||| || ||||| || |||||||| | ||||
Sbjct 32429 CACCGGCACCGGCACGCGCAGCCTGTTCGGTGCGCAGCTCCGCTACGACCTGTCGAAGGG 32370
Query 901 CTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTG 960
||||||||| |||| || |||||||| |||||||| ||||| |||||||| || |||||
Sbjct 32369 CTTCCCGCTCATCACGACCAAGCGCGTGCACTTCAAGTCGGTCGCGTACGAGCTGCTGTG 32310
Query 961 GTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGGA 1020
||||||| | |||||| |||| ||| | || |||||||| ||||||| |
Sbjct 32309 GTTCCTCCGCGGCGACGGCAACGCCCGCTGGCTGCAGGAGCACGGCGTCCGCATCTGGAA 32250
Query 1021 CGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGCACTG 1080
||||||||| |||| | ||| ||||||| || || ||||||| ||||||||| ||
Sbjct 32249 CGAGTGGGCGGACGAGGACGGCGACCTCGGCCCGGTGTACGGCGTGCAGTGGCGTTCGTG 32190
Query 1081 GCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGGAGCTGCT 1140
|| | | | ||| || | || ||||||||| | | | | |||| | |
Sbjct 32189 GCC-GACCCCGTCGGGCGAGCAC-----ATCGACCAGATCGCCCAGGTCATCGAGCAGAT 32136
Query 1141 TCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACCTCAG 1200
|| |||| ||||| |||||| | | || || || |||||||||| || |
Sbjct 32135 CCGGACCAACCCGGACTCCCGCCGGCTCATCGTCTCGGCGTGGAACGTCGCCGAGGTGCC 32076
Query 1201 CGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCCGGCT 1260
||| ||||| || |||||||||| | |||||| | ||||| ||||||| |||
Sbjct 32075 CGAGATGGCGCTGGCCCCGTGCCACGCGTTCTTCCAGTTCCACGTCAACGACGGCAAGCT 32016
Query 1261 CTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCGC 1320
|||| ||| | |||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 32015 CTCGTGCCAGCTGTACCAGCGGAGCGCGGACATGTTCCTCGGTGTCCCGTTCAACATCGC 31956
Query 1321 CTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGCT 1380
|||||||||||| || | |||||| ||||| |||| |||| || ||| || || |
Sbjct 31955 CTCGTACGCGCTGCTGACCCACATGATCGCGGCGCAGACCGGGCTCGAGGTCGGCGACTT 31896
Query 1381 GATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGG-CGCTGATGC 1439
| |||||||| |||||||||||| ||||| ||||||||||||| |||| || || ||
Sbjct 31895 CGTGTGGACCGGTGGCGACTGCCACGTCTACGACAACCACGTCGAGCAGGTCGAGGA-GC 31837
Query 1440 AGCT-CCGCCGACGACCGCGGCCCTACCCGAGGCTCGTGCT-ACACCACGCGCCGTCGAT 1497
|||| ||| ||| | || || ||||| ||||| ||| |||| |||| | |||||
Sbjct 31836 AGCTGACGCGCACGCCGTACGCGCT-CCCGACGCTCGAGCTCGCACCCCGCGAC-TCGAT 31779
Query 1498 CTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCCGTCGATCAA 1557
| ||||||| ||||||| || || | |||| |||| ||| |||||| |||||||
Sbjct 31778 CGACGACTACGAGTACGAGGACTTCACCGTCGTCGGCTACCACCACCACCCGGCGATCAA 31719
Query 1558 GGCGCCGGTGGCCGTCTGATG 1578
||| |||| |||||||||||
Sbjct 31718 GGCCGCGGTCGCCGTCTGATG 31698
>seq63416
Length=16760
Score = 201 bits (222), Expect = 7e-47
Identities = 297/421 (71%), Gaps = 0/421 (0%)
Strand=Plus/Minus
Query 58572 TGTCGCGGACGATCACCACCCGGCGGCCGAAGAGGGGGGACCAGTCGAACATCTTCGCCT 58631
||||||| |||| | |||| |||| || |||| ||||||||| |||||
Sbjct 13137 TGTCGCGTACGAGGAGCACCTTCTTGCCGTGCAGCGGGGCGAGGTCGAACATTGCCGCCT 13078
Query 58632 TGCCGGCGCCCATTGCGGTCGACACCGCGGTGACGCCGCTGGCCTCCAGGGCGTGCACGT 58691
|||| || ||||| || || | || ||| || ||| | || || ||||| ||||
Sbjct 13077 TGCCAGCACCCATCGCCGTGCAGACAGCGACGAGGCCCAGCGATTCGAGTGCGTGGACGT 13018
Query 58692 CCTTCTCGCCCTCGACCACGTAGACCGTATCCGCGTCGCCGAGGCGTTCTACCCGGTAGA 58751
|||||||||||||||||| | |||| ||| || | |||| || || || ||||| |
Sbjct 13017 CCTTCTCGCCCTCGACCATCCACACCGGATCGGCCTGACCGACCCGCTCGACGCGGTACA 12958
Query 58752 GCTGGTCGCCCTTGGTGTTTCCGGACTGGCGGAAGTCCTTGCCGGGTGAGCGGTGCACCC 58811
| | |||||| ||||| |||||||| ||||| |||| |||| |||||||| ||
Sbjct 12957 GGTCCCGGCCCTTCGTGTTGCCGGACTGCCGGAACCGCTTGTCGGGGGAGCGGTGTACAA 12898
Query 58812 GCCGGCCGTCGGAGTACTTGTACTCGACCCCACGGTCCGAGTCGAAGAGATCCTTCATCT 58871
||||||||| ||||||||||||||| || | | |||||| || |||| |||
Sbjct 12897 CCCGGCCGTCACGGTACTTGTACTCGACGCCCTTCTGCTCGTCGAACAGGTCCTGCATGG 12838
Query 58872 CCAGGCCGAGGCGTTCGAGGACGACCTCGGTCTCGTCGGAGTGTGAGTGGATCAGGACCT 58931
|||| || |||||||| || ||| ||||||||| |||||||| ||| ||
Sbjct 12837 ACAGGTTCAGCTCGGCGAGGACGTCCGGTGTCGGGTCGGAGTGCGAGTGGATGAGGGTCT 12778
Query 58932 GGCCGCCGATGTCGGTGATCGTTACCGATCGGTCCTGGGTCGAGTGGCCGGGGGCCTGTG 58991
| || ||| | ||||| ||||| ||||||| | |||||| ||||||||||| |
Sbjct 12777 GACCCTCGACCGAGCGGATCGACACCGACCGGTCCTTCGCCGAGTGCCCGGGGGCCTGCG 12718
Query 58992 C 58992
|
Sbjct 12717 C 12717
>seq63251
Length=12045
Score = 113 bits (124), Expect = 3e-20
Identities = 121/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 41814 TTCAGCGGCGAGAAGATCGTGCGCGCCGCGATCTCCTGCACCACGCCTGTCGTCTCGGCC 41873
||||||| |||| |||| || ||||| ||| |||||| || ||||||| |||
Sbjct 8163 TTCAGCGACGAGGGACTCGTCCGGGCCGCCGCGTCCGCCACCACTCCGATCGTCTCCGCC 8222
Query 41874 ATCGGCCACGAGCCTGACAATCCCGTCCTGGACGACGTCGCCGACTTCCGAGCCGCAACA 41933
||||| |||||| | ||| || |||| ||||| ||||||||| |||| ||| | ||
Sbjct 8223 ATCGGGCACGAGGCCGACCGGCCGATCCTCGACGAGGTCGCCGACCTCCGCGCCTCCACC 8282
Query 41934 CCGACCGACGCCGCGAAGAACGTCGTGCCCGACATGGTCG 41973
|||||||||||||| ||| ||| ||||| ||| ||| ||
Sbjct 8283 CCGACCGACGCCGCCAAGCGCGTGGTGCCGGACGTGGCCG 8322
>seq63378
Length=15302
Score = 86.0 bits (94), Expect = 4e-12
Identities = 165/236 (70%), Gaps = 27/236 (11%)
Strand=Plus/Plus
Query 7220 CTCGGATTCGACGGATCA------CGGAAGCGCCGCAAGGGCGTCACGGACTCCACGGCC 7273
||||| |||||||| || || |||| | |||||||| | ||||| |||| |
Sbjct 3689 CTCGGCTTCGACGGCTCCGAGGGGCGCAAGCCCGGCAAGGGCACTGCCGACTCGACGGTC 3748
Query 7274 CTCATCGGCTGCCGCGTCA---AGGATGGCGCGATCTTCGAGATCGAGGTCTGGGAGCAG 7330
||||| |||| | ||||| || | || | ||||| || ||| ||||||||||||
Sbjct 3749 CTCATTGGCTACTCCGTCACCCAGAA--GCACC-TCTTCAAGGTCGGCGTCTGGGAGCAG 3805
Query 7331 CCCT-CGGAGTGGCGAAGCAGCGAGGGCTGGGAGGTCGAC-ACCGG-CGTCG---TCGAC 7384
||| |||| || | ||||||||||| |||| ||||| | ||| ||||
Sbjct 3806 CCCGACGGACCTGC----CGGCGAGGGCTGG-----CGACCACCGGTCCTCGAGATCGAG 3856
Query 7385 CTGAAGATCCGCCAGACCTTCAAGAAGTACCGCGTCGTCGGCTTCTACGCCGACCC 7440
| ||||| ||| | |||||| | ||| ||||||||| ||||||||||||||
Sbjct 3857 GCGGCCATCCGGCAGGCGTTCAAGGACTACAACGTCGTCGGGTTCTACGCCGACCC 3912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 295901430321264
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