Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq61823 1159 0.0 >seq61823 Length=3776 Score = 1159 bits (1284), Expect = 0.0 Identities = 1792/2531 (71%), Gaps = 87/2531 (3%) Strand=Plus/Minus Query 38922 ACGTCGGGCGGCAGGACGTGAAGTCCCATCCGCCGTGCCTCGCCGAGGTACGTGGCCATC 38981 ||||| ||||||| ||| | | ||||| || || |||| ||||||| ||||| | Sbjct 2876 ACGTCCGGCGGCATGACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGGGCCAGC 2817 Query 38982 TTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGC 39041 |||| | |||| || || ||||| |||| || |||||||||||||||||||||||| Sbjct 2816 TTGTCGCGGGCGTCACCGACGGAGGTCAGCAGCGCGGCCATGTACTCGGCCGGGTAGTGC 2757 Query 39042 GTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCTTGTTG 39101 | ||| |||||||| || | | | | || | ||||||||||| ||||||||||||||| Sbjct 2756 GCCTTGAGGTACGCGGTCCAGAACGAGACCACGCCGTACGCCGCCGAGTGCGCCTTGTTG 2697 Query 39102 AAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCACCGTCCGAG 39161 || ||||| ||| ||| || | || | |||||||| | || ||| ||| || ||||| Sbjct 2696 AACGCGTAGTCGGAGAACGGCAGCAGGATGTCCCACAGGGTCTTGATCGCAGCGGCCGAG 2637 Query 39162 TAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGC 39221 ||||| || || ||||||| |||| || ||| |||| |||| ||||| | Sbjct 2636 TAGCCGTTGTCCTGCATGCCCTTCTCGAAGCCGGCGTACTGCTTGTCCAG---CTCGGAC 2580 Query 39222 TTCTTCTT---GCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCG 39278 |||||||| ||||||||| |||||||| | ||| ||||| || ||| | |||| ||| Sbjct 2579 TTCTTCTTCTTGCCCATGGCGCGGCGGAGGATGTCCGCCTGGCCGAGGGAGAACCCGGCG 2520 Query 39279 AGGATCTGTGCC---GCCTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGC 39335 | |||| || ||| | ||||||||||||||||||| ||| |||||||||| Sbjct 2519 ACCTTCTGCGCGATGGCCATG---ACCTGCTCCTGGTAGATGATCAGGCCGTAGGTCGTG 2463 Query 39336 CCCAGGATCTCGGCAAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGC 39395 || | ||| || || ||||| || | ||| ||||||||||||||||||| ||||| Sbjct 2462 CCGATGATGTCCTTGAGGGGCTCTTCGAGCTCCGGGTGGATCGGCGTGATCGGCTGCTCG 2403 Query 39396 CCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCCCACGCCCATCGGACCCGGACGGTAC 39455 ||||||||||| || |||||||||||||||||| | | |||||||| |||||||||||| Sbjct 2402 CCGTTCTTGCGCAGCGCGTAGTTCGTGTGCGAGTTCGCACCCATCGGCCCCGGACGGTAC 2343 Query 39456 AGCGCGACGACGGCGCTGATGTCCTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAG 39515 || |||| || ||| |||||||||||||||||||||||||| |||||||||||| | Sbjct 2342 AGGGCGATGAGCGCGGAGATGTCCTCGAAGTTGTCCGGCTTCATCAGGCGGAGCAGGCCG 2283 Query 39516 CGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCG 39575 ||||||| |||||||||||||||||| || || |||||||| | ||| ||| || Sbjct 2282 CGCATCGGGCCGCCGTCGAGCTGGAACACGCCCAGGGTGTCGCCGCGCTGCAGGAGCGCG 2223 Query 39576 TAGGTAGCAACGTCGTCCAGCGGGATGTTCTCCAGGTCGACGT-GCTCCCCACGGTTGGC 39634 || | | ||| || ||| ||| |||| ||||||| || | ||||| ||||| | Sbjct 2222 TACGCCTCGGGGTCCTCGAGCCCCATGGTCTCGAGGTCGAGGTCGATCCCC-CGGTTCGT 2164 Query 39635 GCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCAT 39694 |||||| |||| ||||| | ||||||||||||||||||||||| ||||||||||| Sbjct 2163 CTTGATGTTGTCGAGGGCGTCACTGATGATCGTGAGGTTCCGGAGCCCCAGGAAGTCCAT 2104 Query 39695 CTTCACCGCGCCCAGGCTCTCGCACTGG-GGGTAGTCCCACTGCGTCACGGTCACGCCGT 39753 ||| | | ||| || ||| | ||| |||||||| ||||||| ||| || ||||| Sbjct 2103 CTTGATCAGGCCGAGCGACTC-CGCTGCCGGGTAGTCGAACTGCGTGACGATCTGGCCGT 2045 Query 39754 CCGCAGGGCGGACCCACACCGGGAGGTGATCGACCAACGGCTCGTTGGACATGATCACAC 39813 || || | | ||||| | |||| || ||| ||| | |||||||| || | Sbjct 2044 CCTGCTCCCGCTTCATGATCGGGATGATGTCGATCAGCGGGTCGCTCGACATGATGACGC 1985 Query 39814 CGGCCGCGTGAACGCCCATCTGCCGGACGAGACCTTCGAGCCCGAGCGCAGTGTCGATGA 39873 |||||||||| || ||| ||| || || || ||||| |||||||| ||||||| | Sbjct 1984 CGGCCGCGTGCACACCCCACTGGCGCTTCAGCCCCTCGAGGCCGAGCGCGGTGTCGAACA 1925 Query 39874 CCTGCTTCGAGTCCGGGTCGTTCTCGTACAGCCCACGGATCTCGCCCGCCTCGTCGTAGC 39933 || ||||| || |||||| ||||| | | |||| ||| | || || | | ||| Sbjct 1924 CCGTCTTCGCCTCGGGGTCGGTCTCGACGACCGTGCGGACGTCGACGGCTTCCTTGAAGC 1865 Query 39934 GCGGGTGCTCCGGGTTGAAGATGCCCTCCAGGGGCATCGAGTTGCCCATCACGTCGGCCG 39993 | ||||| ||| || |||||| || || || || |||||||||||| | || Sbjct 1864 GGGGGTGGTCCTTGTCGAAGATCCCAGTGAGCGGGATGTCCTTGCCCATCACGGGCGGCG 1805 Query 39994 GGTACGCCTTGGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGCGCCGCGT 40053 | ||||||||| ||||||||||| | ||| || | | || ||||||| | || Sbjct 1804 GCATCGCCTTGGTGAGCTTCTCGCCCATGCCGAACGGGAAGCCGAGGACGCGCGAGGAGT 1745 Query 40054 CCTTCATCGCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCG 40113 |||||| ||| | |||||||||| ||| | || ||||||| || || |||| Sbjct 1744 CCTTCAGCGCCTGCTTCGCCTTGATCGTGCCGTACGTGACGATCTGCGCCACGCGCTCCG 1685 Query 40114 CCCCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGA 40173 |||||||||||||||||||||| ||||| | || || || |||||||| |||||||||| Sbjct 1684 ACCCGTACTTCTCGGTGACGTACTTGATCGCCTCACCGCGGCGCCGGTCGTCGAAGTCGA 1625 Query 40174 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40233 ||| | ||||||||| || ||||| || ||||| ||||||||||||||||| ||||||| Sbjct 1624 CGTCGAAGTCGGGCATCGAGACGCGGTCCGGGTTGAGGAACCGCTCGAAGATCAGCCCGT 1565 Query 40234 GCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCG 40293 || |||| ||||| ||||| ||||||| | ||| || |||| |||||||||| | | Sbjct 1564 GCCGGATCGGGTCGAGGTCGGTGATGCGCATCGCGTACGCCACCATCGAACCGGCACCGG 1505 Query 40294 AGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGA 40353 | ||||| || || ||||| | | |||||| | ||| | |||| |||||||||||||| Sbjct 1504 AACCACGACCCGGGCCGACACGGATGCCGTTGTTCTTCGACCAGTTGATGAAGTCGGCGA 1445 Query 40354 CGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACT-GAAGC 40412 | |||||||||||| |||||| |||| |||| |||| || | ||||||| | | || Sbjct 1444 CCACCAGGAAGTAGCCCGGGAAGCCCATCTGGTTGATGATCCGGGTCTCGTAGTCGGCGC 1385 Query 40413 TGCT--TGCCATGCTCGTAGTCGGTCCCGTTCGGGAACCG----TCGAGCTGCACCACGG 40466 ||| ||| |||| | | |||| ||| | || |||||| | | || Sbjct 1384 -GCTCCTGC--ACCTCGGGCGTGATGCCGTCGGGGTAGCGGTACTCGAGC--CCCTTCG- 1331 Query 40467 TGGACCTCGTCCTCGAACCACGTAACCTCGGTGTGACCCTCGGGCACGGGGAAGCGGGGC 40526 || ||| | ||||||||||| |||||| | || ||||||| ||||| ||| Sbjct 1330 -CGATCTCCTTCTCGAACCACGACTGCTCGGTCTCGCCGGCGGGCACCGGGAACTTCGGC 1272 Query 40527 ATG-AG--GTCGGTGTGCTCGAACATGCCAGTCGTGTCGACGCGCTCGGCGATCTCCAGC 40583 ||| || | | ||| |||||| | | || | ||||||||||| |||| Sbjct 1271 ATGTAGTTGGCCGTGGTGTCGAACTCGAC------GTTGCACCGCTCGGCGATGAGCAGC 1218 Query 40584 GTGGT-CCGCATCCCCCACTCCCAGATGGGAGAGGAGTCGATGGCCGCCATCTCGGCGGC 40642 ||| | |||| || | | | | | ||| | | |||| ||||| || | Sbjct 1217 GTGTTGTCGCAGGCC-----TCGGGGTTGTCGCGGAAGAGGT-GCCG-CATCTGCGCCGG 1165 Query 40643 CGACTTGATGTAGTACCCGGAGCCCTCGAACCGGAAGCGGTTCGGGTTGTCGATCGTCGT 40702 || ||| | |||| || || | | |||||| |||||||||||||| || | ||||| Sbjct 1164 CGTCTTCAGGTAGAACTCGTCGGCGTCGAACTTGAAGCGGTTCGGGTCGTTCAGCGTCGA 1105 Query 40703 GCCGGTCTGGACGCAGAGCAGAGCGTCGTGCGCGGTGCTCTCCTCGGCCGTG-ACGTAGT 40761 |||| ||| |||||||| || || |||||| || || | || |||| ||||| Sbjct 1104 CCCGGACTGCACGCAGAGGAGCGCCGCGTGCGACTTGGCGTCGT-GGGCGTGCGTGTAGT 1046 Query 40762 GCGAGTCGTTCGTGACCACGGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAGGTCGT 40821 | |||||||||| | || | | || |||||| ||| |||| ||| |||||| Sbjct 1045 GGAGGTCGTTCGTGCCGACCAGCGGGATGTCGAGGTCCTTCGCCAGGCGGATCAGGTCGC 986 Query 40822 CGCGGACACGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACCGGTCCC 40881 | || || ||||||||||| || ||||||||||| | ||| |||||| |||| Sbjct 985 CCATGATCCGGCGCTCGATCTCGAGCCCGTGGTCCATCACCTCGGCGAAGTAGTTGTCCT 926 Query 40882 GACCGAAGACCTCCAGGTA--CCGGC-CAGCCTCGGCAACGGCCTCGTCGTACTGCCCGA 40938 ||||||| || |||| ||| | | |||| | | ||||||||||||||| |||| Sbjct 925 TGCCGAAGATGTCGCGGTAGTCCGCCGCTGCCTTG---AGGGCCTCGTCGTACTGGCCGA 869 Query 40939 GGTTGAGCCGGGTCATGATCGCACCGCCAGGGCATCCCGTGGTGACGATCAGGCCCTCGT 40998 || || || ||| |||| | || ||||| ||||| || |||| | |||||||| Sbjct 868 GGCGCAGGCGCGTCTGGATCTCTCCCGAGGGGCAGCCCGTCGTCGCGATGATGCCCTCGT 809 Query 40999 TGTGCTCGGCGACCAGGTCGAAGTCCATGCGCGG---------GTACTTCCCGAGC-AGG 41048 ||| || | || |||| ||||||||| || |||| | ||||| | | Sbjct 808 GGTGTTCCTGCAGGAGCTCGATGTCCATGCGGGGCTTGAAGTAGTACCCCTCGAGCGACG 749 Query 41049 CCCTCCTGGTACGAGCGGGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCTCC 41108 || || | || ||| ||| | |||||||||| ||||||| ||||||| Sbjct 748 CCTTCGACG-AC-AGCCGGAAC-----------AGGTTGTGCATGCCGGTCGTGTTCTCG 702 Query 41109 GCGAGGATCGTGAGGTGCGTGTACGCACCGCGACCGCTCACGTCGTAACGCTTCTGGTCC 41168 |||| ||||| | ||||||||||| ||| |||| ||||||| | | | | Sbjct 701 GCGAACATCGTCATGTGCGTGTACGAACCCGCACCGGACACGTCG------TCCCCGCCA 648 Query 41169 TCGGTGCCCCACTTGACGCGCTCCTGGTCGAAGC---GCGAGCCCGGAGCCATGTACGCC 41225 || |||||| || || || ||| ||| | | || || | ||||||||| Sbjct 647 CCGTCGCCCCAGCGCACACGGGTCTTGTCCGAGCGGTGGGTGCGGGGCGTGATGTACGCC 588 Query 41226 TCGATGCCGATGATCGGCTTGACCCCAGCGGCCTGAGCCGTGGTGAAGAAGTCGTGGGCA 41285 ||| ||||||||||||||||||| || |||||| || | | |||| ||| || Sbjct 587 TCGGTGCCGATGATCGGCTTGACGCCGCCGGCCTTGGCGGCCTTCCAGAACTCGAACGCG 528 Query 41286 CCGTGCAGGTTGCCGTGGTCAGTGACTGCGACTGCCGGGGAGCCCTGTCGGGCAACCTCG 41345 ||| || |||||||||||| || || || || || || |||||| ||| ||| Sbjct 527 CCGAACATGTTGCCGTGGTCGGTCACCGCCACGGCGGGCATGCCCTGGGCGGCGGTCTCC 468 Query 41346 GCGACCATTTGCTTCATCCGAGCGGCCCCGTCGAGGAGCGAGTACTCGGAGTGGTTGTGG 41405 || || | | | || ||||| |||||||| | |||||||||| ||| ||| Sbjct 467 GCCACGAGGTCGCCGAGTCGTGCGGCACCGTCGAGCATCGAGTACTCGCTGTGCACGTGC 408 Query 41406 AGGTGGACGAA 41416 ||||||||||| Sbjct 407 AGGTGGACGAA 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160019731953792