Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031099.1 Length=44536 Score E Sequences producing significant alignments: (Bits) Value seq63378 89.7 1e-13 seq63531 84.2 6e-12 >seq63378 Length=15302 Score = 89.7 bits (98), Expect = 1e-13 Identities = 110/151 (73%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 13238 GCTGACCTGGGCTGGCGCGACGGCGATGCGAGCGTTCGGCGCTGCGCTGCGATTCGCGAT 13297 ||||| | ||||||| |||| | || | |||||||| || |||| |||||| | Sbjct 12830 GCTGATCGGGGCTGG------GGCGCTCCGCGTCTTCGGCGCGGCCGTGCGGTTCGCGTT 12883 Query 13298 GGGGCCGGTCGGACTGATCATCATCGGAATCAGCGCCTTGGTCGCTGGGCTCGTGTGGTT 13357 ||| |||||||| | ||||||| | ||| | || | ||||| |||||||||||||| Sbjct 12884 GGGCCCGGTCGGCATCATCATCACCATCATCGGTGCGCTCGTCGCCGGGCTCGTGTGGTT 12943 Query 13358 CTTCACCAAAACCGAGATCGGCCAGAAGATC 13388 |||||| | || || |||| ||| |||| Sbjct 12944 CTTCACGCAGACGAAGCTCGGGCAGGCGATC 12974 >seq63531 Length=42858 Score = 84.2 bits (92), Expect = 6e-12 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 38275 CGACGACCCCGACACGCTGCTCGTCGACGCGGCGAGGCTGGTGATCGAGACACAGTTCGC 38334 |||||||| ||| |||||||| || || | ||| | ||| || ||| ||||||| Sbjct 25721 CGACGACCTCGAGCTGCTGCTCG-CGGCG-GTCGAA-CAGGTCGTCTCGACGCAGTTCGG 25665 Query 38335 GTCCGGATCGATGCTGCAGCGCAAGCTCAACATCGGGTACGCGCGCGCCGGCCGCTTACT 38394 ||| |||||||| ||||| |||||| | |||||| |||| ||||| ||| | | Sbjct 25664 GTCGACCTCGATGCTCCAGCGGAAGCTCCGCGTCGGGTTCGCGAAGGCCGGACGCCTGAT 25605 Query 38395 CGACGAGCTCGAAGGCCTCGACATCGTCGGCCCCGCCCAGGGCAGCAAGGCCCGAGAGGT 38454 ||| | | || || ||||||||||||||| || |||| ||||| || || || Sbjct 25604 GGACCTGATGGAGTCCCGCGACATCGTCGGCCCGTCCGAGGGTTCGAAGGCGCGCGACGT 25545 Query 38455 ACTCGTGGACGCGGCGGA 38472 ||||| | ||||||| Sbjct 25544 CCTCGT---CACGGCGGA 25530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142285949014464