Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031124.1 Length=76012 Score E Sequences producing significant alignments: (Bits) Value seq62752 183 1e-41 >seq62752 Length=6345 Score = 183 bits (202), Expect = 1e-41 Identities = 439/653 (67%), Gaps = 17/653 (3%) Strand=Plus/Minus Query 50700 GACCACATTCGCCAGTTGCATCGGCTGGGGTTCCTGCCGCTGCGGTTCTGCGCGGTGCCT 50759 |||||| | ||| |||| || ||||| | ||||||||| | || ||||| |||| Sbjct 2866 GACCACGTCCGCGCCCTGCACCGCCTGGGCTACCTGCCGCTCGAGATCCGCGCGCTGCCC 2807 Query 50760 GAGGGGACGCTAGTGCCTATCGGGGT-GCCATCGTTCACGGTGGAGAACACTCACGAGTC 50818 ||||| || || | || ||||| || |||| | | ||||| |||||||| ||| Sbjct 2806 GAGGGCACCCTCGCTCCGATCGGCGTCGCCACCCTG-ACGGTCGAGAACACCGTCGACGA 2748 Query 50819 GTTCTACTGGCTGACCAACTACATCGAGACCGGCCTGAGCGCCGGGGTGTGGCAGGCCAG 50878 ||||| ||||||| | |||||||||||||||| ||| || | | ||||| || Sbjct 2747 GTTCTTCTGGCTGCCGAACTACATCGAGACCGCACTGTCTGCGTCGATCTGGCACCCCTC 2688 Query 50879 CACCAGCGCGACCATCGCTAAGCAGTACCGGCGGGTGCTTGAGGCCGCGGCCTTGCGGAC 50938 || ||| || | || ||||||| | | |||| | |||| || || Sbjct 2687 GACGGTCGCCACGAAGGCGCTCGAGTACCGCGACCTCATGGAGGACTGGGCCGCCCGCAC 2628 Query 50939 CGGTGCGGACCTGGCGGGCGTCGACTG-GCAGTGCCATGACTTCTCTTACCG-GGGCATG 50996 |||||| || | ||| || |||||| || | ||| |||||||| | ||| ||||| | Sbjct 2627 CGGTGCAGATCCCGCGAGCATCGACTTCGCCGC-CCACGACTTCTCGTTCCGCGGGCA-G 2570 Query 50997 TCCTCGCAT-GAGAGCGCGGCGGCGTCGGGCGCGGCGCACCTGCTGAGCTTCACCGGTAC 51055 || |||| ||| || |||||| || || | |||||||| ||| ||| || Sbjct 2569 TCGA-GCATCGAGTCGGCCGCGGCGGGCGGTGCCGGACACCTGCTCTCGTTCCTCGGCAC 2511 Query 51056 GGACTCGCTGGTCTCACTCGATTGGATTGACCGCTACTACGGCGGCGATTAC------GT 51109 |||||| || ||| ||||| | || |||||||||||| |||||| || || Sbjct 2510 CGACTCGATGCCCTCCCTCGACTTCATCGACCGCTACTACCCCGGCGACAACGGCTGGGT 2451 Query 51110 CGCGGGGTCGGTCCCGGCTACCGAGCACTCGGTGATGTGTACCGGCATTGAGACGGTCGG 51169 |||| | ||||| || ||||||||| || ||||| || | | | | ||| Sbjct 2450 GGCGGCGAGCGTCCCCGCGACCGAGCACAGCGTCATGTG---CGTCCGCGGCGCCGACGG 2394 Query 51170 GGAGCTTGAGACGTTTAGGCGGCTGCTGGACCTGTACCCGACCGGCATCGTTAGCGTCGT 51229 ||||| ||||| || || | | || ||| |||||||||| |||||||| | || Sbjct 2393 CGAGCTGGAGACCTTCGCGCAGATCCTCGACGTGTACCCGACGGGCATCGTCTCGGCGGT 2334 Query 51230 TAGCGACACGTTCGACCTGTGGAAGGTGCTAACCACGTACCTGCCGACGCTGTATAAGCA 51289 |||||| |||||||||| ||||| || ||| | || ||| ||| | | | Sbjct 2333 GAGCGACGGCTTCGACCTGTTCAAGGTCCTCACCGAGACGCTCCCGCAGCTCAAGGACCG 2274 Query 51290 GATCGTGGGCCGGGACGGGAAGCTGGTCATTCGGCCTGACTCCGGCGATCCGG 51342 ||| | ||| ||||| ||||| ||||| || || ||||| ||||| |||| Sbjct 2273 CATCACCGCCCGCGACGGCAAGCTCGTCATCCGTCCGGACTCGGGCGACCCGG 2221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242924966942192