Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq63531 187 9e-43 >seq63531 Length=42858 Score = 187 bits (206), Expect = 9e-43 Identities = 387/568 (68%), Gaps = 16/568 (3%) Strand=Plus/Minus Query 51777 TTCGGCGCTCAACTTAGGTATGACCTGAGTAAGGGCTTCCCGCTCATCACCACCAAGAAG 51836 ||||| || || || | || |||||| |||||||||||||||||||| |||||| Sbjct 32404 TTCGGTGCGCAGCTCCGCTACGACCTGTCGAAGGGCTTCCCGCTCATCACGACCAAGCGC 32345 Query 51837 GTGCATTTCCCATCAGTGGTCGGG---GAGTTGCTGTGGTTGCTTTCGGGCTCTACG--A 51891 ||||| ||| || ||||| | ||| |||||||||| | || | | ||| | Sbjct 32344 GTGCACTTCAAGTC---GGTCGCGTACGAGCTGCTGTGGTTCC--TCCGCGGCGACGGCA 32290 Query 51892 ACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGGGACGAATGGGCGGATGAAAATG 51951 ||| | | || || || |||||||| |||| ||| |||| |||||||| || | | Sbjct 32289 ACGCCCGCTGGCTGCAGGAGCACGGCGTCCGCATCTGGAACGAGTGGGCGGACGAGGACG 32230 Query 51952 GTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGTTGG--GATGCTGGTGGCGGCAA 52009 | |||| || || ||||| || |||||||||| ||| || | | | ||| | Sbjct 32229 GCGACCTCGGCCCGGTGTACGGCGTGCAGTGGCGTTCGTGGCCGACCCCGTCG--GGCGA 32172 Query 52010 GGTCATCGATCAGATCCATGAAGTCGTCAAATCAATTAAGAACGATCCTGATAGTCGACG 52069 | |||||| |||||| | ||| || | || || | | || || || || Sbjct 32171 GCACATCGACCAGATCGCCCAGGTCATCGAGCAGATCCGGACCAACCCGGACTCCCGCCG 32112 Query 52070 GCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCA 52129 || ||| ||||| || ||||| || | || || || |||||| |||| || ||||| Sbjct 32111 GCTCATCGTCTCGGCGTGGAACGTCGCCGAGGTGCCCGAGATGGCGCTGGCCCCGTGCCA 32052 Query 52130 TACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTC 52189 | | ||||| ||| | || || || ||||| |||||||| |||| |||||| Sbjct 32051 CGCGTTCTTCCAGTTCCACGTCAACGACGGCAAGCTCTCGTGCCAGCTGTACCAGCGGAG 31992 Query 52190 TGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCT 52249 || ||||||||| | || || ||||| ||||| ||| || | ||||||| || | Sbjct 31991 CGCGGACATGTTCCTCGGTGTCCCGTTCAACATCGCCTCGTACGCGCTGCTGACCCACAT 31932 Query 52250 GATTGCTCGAGCAG-TTGGCCTTGATGTTGGTGAATTCATTTGGACTGGTGGCGACGTCC 52308 ||| || | |||| || || || || || || ||| | ||||| ||||||||| || Sbjct 31931 GATCGC-GGCGCAGACCGGGCTCGAGGTCGGCGACTTCGTGTGGACCGGTGGCGACTGCC 31873 Query 52309 ATATCTACAACAACCATGTAGATCAGGT 52336 | ||||| ||||||| || || ||||| Sbjct 31872 ACGTCTACGACAACCACGTCGAGCAGGT 31845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189952285523040