Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_031224.1
Length=59443
Score E
Sequences producing significant alignments: (Bits) Value
seq63531 187 9e-43
>seq63531
Length=42858
Score = 187 bits (206), Expect = 9e-43
Identities = 387/568 (68%), Gaps = 16/568 (3%)
Strand=Plus/Minus
Query 51777 TTCGGCGCTCAACTTAGGTATGACCTGAGTAAGGGCTTCCCGCTCATCACCACCAAGAAG 51836
||||| || || || | || |||||| |||||||||||||||||||| ||||||
Sbjct 32404 TTCGGTGCGCAGCTCCGCTACGACCTGTCGAAGGGCTTCCCGCTCATCACGACCAAGCGC 32345
Query 51837 GTGCATTTCCCATCAGTGGTCGGG---GAGTTGCTGTGGTTGCTTTCGGGCTCTACG--A 51891
||||| ||| || ||||| | ||| |||||||||| | || | | ||| |
Sbjct 32344 GTGCACTTCAAGTC---GGTCGCGTACGAGCTGCTGTGGTTCC--TCCGCGGCGACGGCA 32290
Query 51892 ACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGGGACGAATGGGCGGATGAAAATG 51951
||| | | || || || |||||||| |||| ||| |||| |||||||| || | |
Sbjct 32289 ACGCCCGCTGGCTGCAGGAGCACGGCGTCCGCATCTGGAACGAGTGGGCGGACGAGGACG 32230
Query 51952 GTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGTTGG--GATGCTGGTGGCGGCAA 52009
| |||| || || ||||| || |||||||||| ||| || | | | ||| |
Sbjct 32229 GCGACCTCGGCCCGGTGTACGGCGTGCAGTGGCGTTCGTGGCCGACCCCGTCG--GGCGA 32172
Query 52010 GGTCATCGATCAGATCCATGAAGTCGTCAAATCAATTAAGAACGATCCTGATAGTCGACG 52069
| |||||| |||||| | ||| || | || || | | || || || ||
Sbjct 32171 GCACATCGACCAGATCGCCCAGGTCATCGAGCAGATCCGGACCAACCCGGACTCCCGCCG 32112
Query 52070 GCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCA 52129
|| ||| ||||| || ||||| || | || || || |||||| |||| || |||||
Sbjct 32111 GCTCATCGTCTCGGCGTGGAACGTCGCCGAGGTGCCCGAGATGGCGCTGGCCCCGTGCCA 32052
Query 52130 TACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTC 52189
| | ||||| ||| | || || || ||||| |||||||| |||| ||||||
Sbjct 32051 CGCGTTCTTCCAGTTCCACGTCAACGACGGCAAGCTCTCGTGCCAGCTGTACCAGCGGAG 31992
Query 52190 TGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCT 52249
|| ||||||||| | || || ||||| ||||| ||| || | ||||||| || |
Sbjct 31991 CGCGGACATGTTCCTCGGTGTCCCGTTCAACATCGCCTCGTACGCGCTGCTGACCCACAT 31932
Query 52250 GATTGCTCGAGCAG-TTGGCCTTGATGTTGGTGAATTCATTTGGACTGGTGGCGACGTCC 52308
||| || | |||| || || || || || || ||| | ||||| ||||||||| ||
Sbjct 31931 GATCGC-GGCGCAGACCGGGCTCGAGGTCGGCGACTTCGTGTGGACCGGTGGCGACTGCC 31873
Query 52309 ATATCTACAACAACCATGTAGATCAGGT 52336
| ||||| ||||||| || || |||||
Sbjct 31872 ACGTCTACGACAACCACGTCGAGCAGGT 31845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 189952285523040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |