Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031230.1 Length=98136 Score E Sequences producing significant alignments: (Bits) Value seq63210 215 3e-51 seq63416 129 4e-25 seq63251 123 2e-23 >seq63210 Length=11074 Score = 215 bits (238), Expect = 3e-51 Identities = 729/1134 (64%), Gaps = 60/1134 (5%) Strand=Plus/Plus Query 46264 CTCGACGAGACCACGCGCAAGCAGGCCGAGGAGATCGCCAGTCTGCCATTCATCTACCCC 46323 ||||| |||| |||| |||||||| || ||| | |||| ||| | | ||| Sbjct 6761 CTCGAGGAGAACACGGAGCAGCAGGCCCGCACGACCGCTCGCATGCCGTTCGTGTTCCCG 6820 Query 46324 CACGTTGCGCTGATGCCAGATGCTCACGCAGGCAAGGGGTCTGCCGTGGGCACGGTGATC 46383 ||| | || || ||||| || || ||| ||| || | |||||||| |||| ||| Sbjct 6821 CACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCACCGTGGGCTCGGTCATC 6880 Query 46384 CCCACCAAGGACGCCGTCATCCCAGCGGCCGTGGGTGTCGACATCGGTTGCGGGATGATC 46443 || ||| | ||| |||| || |||||||| || || |||||||| ||||| |||||| Sbjct 6881 CCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACATCGGCTGCGGCATGATC 6940 Query 46444 GGCGTGGAGACCTGGGTCCAGAAGTCCGACATCGCCGGGATGGACCTAGCCCTCCTCCGT 46503 | || |||| | || |||| |||| | || | ||||| ||||| Sbjct 6941 GCGGTCCGGACCCAGTTCACGAAGGGCGACCTGCCC---ACCGACCTGCAGGGGCTCCGC 6997 Query 46504 GAGTGCATCGAGAAGGAGATTCCACTCTCCCCCGGAAACTACAACAAGAACCCACGTTGG 46563 ||| |||||| || || || || ||| | || | ||| ||| ||| | Sbjct 6998 GAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGAACCGGAAGAT-CGTCGC 7056 Query 46564 GCACCGCATACCACGGAACGTATCGAGTTGCTCGAGAGGCTCGCCGAGGACACAGGTGTG 46623 |||||| | | | || |||| |||||||| | | || |||| | | || | Sbjct 7057 -CACCGCCGAGCCC----CGCATCGCAGAGCTCGAGACGATGGCGGAGGCCGCCGGCTTC 7111 Query 46624 GACCTCTCACATTCGC-CGAAG--TGGCGGGAACAGCTCGGGTCGCTCGGCGGCGGCAAC 46680 |||| | | ||| || | |||||| | ||||||||| ||||||| |||||| Sbjct 7112 GACCCCGCGGGCGCGCACGGCGGGTGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAAC 7171 Query 46681 CACTTCATCGAGCTGTGCCAGTCGGTGATTGCGGAATACGACGACGGTGAGCTGTGGCTG 46740 |||||||||||| | | || ||| || || | ||| || | |||||| Sbjct 7172 CACTTCATCGAGGTCTCCC--TCGACGA--GCAG--------GACC---AGGTCTGGCTG 7216 Query 46741 TTCCTCCATTCGGGTTCGCGTGGTGTCGGCAACAAGATCGCCCAGAAGCANNNNNNNNNN 46800 ||||| || || || || || || ||||||||||||||||||||| ||| Sbjct 7217 TTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACATCACGATC 7276 Query 46801 NNNNNNNNNNNGTGCAAGCGATGGCATGTCCCGCTGGCGAATCCTGACCTGGCCTACCTA 46860 | |||| ||| || |||| || | || |||||||| ||||| Sbjct 7277 GCGAAGAAGGCGATGGAGCGGTGGTGGATCGAGCTGCCGGACCCCGACCTGGCGTACCTC 7336 Query 46861 CCCTCCGGCACGCAGGAATTCACCACCTACCTACGAGAGCTGCGGTGGGCCCAGCGATTC 46920 | ||||||| || ||| | ||| | |||||||||||||| |||| ||| Sbjct 7337 GTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCGCAGCACTTC 7396 Query 46921 GCACTCGAGAACCGCGCCGAGATGATGGATCGGTTCGTCGCGGTTTTCCAGTGGTGGCTC 46980 || ||| ||||||| ||||||||||| ||| ||||| ||| ||| | | | Sbjct 7397 GCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTC-CGG-----CAGCTGCG---C 7447 Query 46981 GAGGATCAGGGGTACGACTTCCATAACGACGAGATGCCTGATGAGGTCGAGGTCCGGCGC 47040 |||| ||| || || | || |||| ||| ||||| || Sbjct 7448 GAGG-TCATGGACGCGCC--------CGTCGAG---------GAGCTCGAG------CGA 7483 Query 47041 ATCAACTGCCACCACAACTACACCGAGAACGTCACGATCAACGGCGAGAGGGTGTGGCTG 47100 ||||||||||||||||||| ||| || || ||| | || || |||||| || Sbjct 7484 ATCAACTGCCACCACAACTTCACGCAGCGCGAGACGCACTGGGGGAAGTCCGTGTGGGTG 7543 Query 47101 ACGCGCAAGGGTGCGATCGACGCCAGCGAGGGCAAGTACGGACTCATCCCCGGCTCCATG 47160 | || ||||| |||||| | || | | ||| || ||| || |||||||| || ||| Sbjct 7544 TCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCCCGGGTCGATG 7603 Query 47161 GGCACCAAGTCGTACGTCGTTGTGGGGCAGGGGAATTCGTCTGGCCTATACTCGGCACCA 47220 |||||| |||||||||||| | ||| | || || | | || | ||| | || Sbjct 7604 GGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAACAAGCCGTCGCTCGAGTCGTCGCCG 7663 Query 47221 CATGGGGCTGGCCGGAACTTCTCTCGCACCGAGGCTCGCAAGCGGTTCACTGCGGACGAC 47280 || || || || ||| | ||| || | | ||| || | |||||| ||||| Sbjct 7664 CACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCACGCACGACGAG 7723 Query 47281 CTCGCGAAGGCCATGGAGGGCATCGAGTACCGCCACGGTGAGGAGTGGATCGACGAGATC 47340 ||| | |||||||| ||||||||||||||| || || | || ||||||||||| Sbjct 7724 CTCCGGGCGGCCATGGTCGGCATCGAGTACCGCGACACCGACGCGTTCCTCGACGAGATC 7783 Query 47341 CCCGCAGCGTACAAGGACATCGACCAGGTCATCGAGGACGCGAAAGACCTTGTG 47394 || || ||||||||| ||||||||||| || | |||||| ||||| ||| Sbjct 7784 CCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGACCTCGTG 7837 >seq63416 Length=16760 Score = 129 bits (142), Expect = 4e-25 Identities = 263/376 (70%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 71706 TCGGTGTCGGTCACCGCAATTGAGGGGCAGGTTCTTGTCCACTCTCACTCCGACCCCACT 71765 ||||||||| || | | | ||||| ||| || ||||||| ||||||||||| || Sbjct 12750 TCGGTGTCGATCCGCTCGGTCGAGGGTCAGACCCTCATCCACTCGCACTCCGACCCGACA 12809 Query 71766 GATGAAGTCCTCGAGCGTATCGGGATC-GCCCCGGCCG-ACCTCTTCGACAGTCCGAAGG 71823 || ||||||| || | | | | | | || || | |||| |||||| | ||||| Sbjct 12810 CCGGACGTCCTCGC-CG-AGCTGAACCTGTCCATGCAGGACCTGTTCGACGAGCAGAAGG 12867 Query 71824 GTGTGGACTACAAGTATGAAGACGGCCGGGTTGTTCACCGCAGCACCGACAAGAAGTTCC 71883 | || || |||||||| |||||||||||||| |||||| | |||||||| ||||| Sbjct 12868 GCGTCGAGTACAAGTACCGTGACGGCCGGGTTGTACACCGCTCCCCCGACAAGCGGTTCC 12927 Query 71884 ACCAGCAGGGCAACACACAGGGCTCCAAGCTGTATCGTGCATCCA--AACTGGCTGCGGC 71941 ||| |||||||| ||||| | ||||| | || || | | | | ||| Sbjct 12928 GGCAGTCCGGCAACACGAAGGGCCGGGACCTGTACC--GCGTCGAGCGGGTCGGTCAGGC 12985 Query 71942 GGAAGAGGTGTGGTTCTGTGAGGGCGAGAAGGATGTCCACGCACTCGAGAGCG-TAGGAC 72000 || ||||||| | |||||||||||||| |||||||||||||| | || | || | Sbjct 12986 CGATCCGGTGTGGATGGTCGAGGGCGAGAAGGACGTCCACGCACTCGA-ATCGCTGGGCC 13044 Query 72001 TGGTCGC---CACCACGAACGCTGGTGGTGCAGGCAA--CATCAAGAAGTTCGACCTCTC 72055 | ||||| | |||| || || ||||| ||||| | || | |||||||||| | Sbjct 13045 TCGTCGCTGTCTGCACG-GCGATG--GGTGCTGGCAAGGCGGCA--ATGTTCGACCTCGC 13099 Query 72056 CCCACTGCACGGCAAG 72071 ||| |||||||||||| Sbjct 13100 CCCGCTGCACGGCAAG 13115 >seq63251 Length=12045 Score = 123 bits (136), Expect = 2e-23 Identities = 294/438 (67%), Gaps = 16/438 (4%) Strand=Plus/Plus Query 43358 CGAGGGACTGTTCCACCCACGGCACAAGATCCCCTTGCCCCACATCCCCAGGCGCATCGG 43417 |||||| |||||| |||| | ||| || | ||||| | | || |||||||| Sbjct 7886 CGAGGGGCTGTTCGACCCCGCCCGGAAGCGCCGCCTGCCCTTCCTGCCGCACCGCATCGG 7945 Query 43418 GCTCATCACTGCCAAGAACTCTGATGCCGAGCGCGACGTGATCAACGTGGCACGGGAC-- 43475 |||||||| | |||| |||| || |||||| ||||| ||| | || ||| | Sbjct 7946 CCTCATCACCGGCAAGGACTCAGACGCCGAGAAGGACGT---CAA-GCGGAACGCGCAGC 8001 Query 43476 --CGGTGGCCGGGGGTGTCGTTCAAGACCTTTGCCGTTCCCGTCCAGGGCAAGTCCACGG 43533 ||||||||| ||| |||| |||| | | |||| |||||| || || | Sbjct 8002 TGCGGTGGCCGCAGGTCGAGTTCCGGACCGTCCACACCGCCGTGCAGGGCGAGCGGACCG 8061 Query 43534 TGCGCGAGGTGAAGAAGGGTCTCGAGGAGCTCGACCAGGACCCGGGCGTCGACGTCATCA 43593 || ||||||| | | || ||||||||| ||||||| |||||||||||||| Sbjct 8062 TGGGCGAGGTCACCGCCGCCATCCTCGAGCTCGACGCCGACCCGGACGTCGACGTCATCA 8121 Query 43594 TCTGCACCCGAGGCGGTGGATCCAAGGAGGACCTGCT-GCCGTGGTCTGATGAGGGCTTG 43652 || | | || || ||||| | || ||||||| | | | | || ||||| | Sbjct 8122 TCATCGCGCGCGGTGGTGGCGACTTCCAGAACCTGCTCGGCTTCAGC-GACGAGGGACTC 8180 Query 43653 GTGCG---TGCGGCGTTCGCTTGCAACACCCCCATTGTCTCCGCGATCGGTCACGAGAAC 43709 || || || |||| ||| || ||| || || |||||||| ||||| |||||| | Sbjct 8181 GTCCGGGCCGCCGCGTCCGC---CACCACTCCGATCGTCTCCGCCATCGGGCACGAGGCC 8237 Query 43710 GACTGTCCACTCCTTGACCGTGTGGCGGACCTGCGTGCCTCGACGCCCACCGACGCTGCG 43769 ||| | || |||| ||| || || ||||| || ||||| || || |||||||| || Sbjct 8238 GACCGGCCGATCCTCGACGAGGTCGCCGACCTCCGCGCCTCCACCCCGACCGACGCCGCC 8297 Query 43770 AAGAGGGTTGTGCCAGAC 43787 ||| | || ||||| ||| Sbjct 8298 AAGCGCGTGGTGCCGGAC 8315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313666835351088