Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_031234.1
Length=43982
Score E
Sequences producing significant alignments: (Bits) Value
seq63378 179 1e-40
>seq63378
Length=15302
Score = 179 bits (198), Expect = 1e-40
Identities = 474/712 (67%), Gaps = 44/712 (6%)
Strand=Plus/Plus
Query 1012 CGACCTCGAGGCTGGGGCAAGTCTCCTATCCTGGGAATGATTGCCCTGGGCGAGGCACTG 1071
||||| ||||||||||||||||| || |||| | || | | | ||||| || ||
Sbjct 2819 CGACCCCGAGGCTGGGGCAAGTCCCCGTTCCTCGCCGCGACCGGCATCGGCGAAGCGCTC 2878
Query 1072 GGTCCAG-TGGTCTTTGACGGATGGGACGCGGACGGACAACCCGTCGGGCGTCCTTGGTC 1130
|| || | ||| ||||| |||||||| ||||| || ||||||| || || |||
Sbjct 2879 T-TCGAGGTCGTCCCCGACGGCTGGGACGCCGACGGGCAGCCCGTCGCCCGCCCGTGGAT 2937
Query 1131 AGAGACACGGACCCCCATCGTGAACATCTCGG---CCGTG---TCCGAGGAGCAGGTCGA 1184
|| ||| |||| ||| || ||| ||| | ||||| || ||||| |
Sbjct 2938 CGACTTCAAGACGATCATC---AACGTCCCGGTCACCGCGACCTCCGATGACCAGGTGCA 2994
Query 1185 TAACACGTGGTCGCCCATGCTGGAGATGTTGCACGAGGACGCAGCGATCCATGACCACTA 1244
||||||||| | || ||||| |||||| || | ||||| | || | || |
Sbjct 2995 GAACACGTGGGCACCGATGCTCGAGATGGCGCGCACCGACGCG------CTTGTCAACGA 3048
Query 1245 CCCCGGCCTCGAGCCGATGGAGACGTTCATCTCGCTGCCGCGCGGTCGAGGTCGAATCGA 1304
|| | |||| |||||||| ||||||||| || | || |||| | || |||| ||
Sbjct 3049 GTTCGACGTCGACCCGATGGACACGTTCATCGCGATCCCCGGCGG-CAAGATCGAGCCG- 3106
Query 1305 CAAGCTCACCGCGTCACCTCGTACTGTGAAGGG--TAAGCGTGCCA-TCTTCACGGTCAT 1361
| |||| |||| || | | ||||| | || || || | || ||||
Sbjct 3107 ----CGCACCTCGTCCGGCCGGTCCATCAAGGGCCTCCCCGGGCAGGTCGCCGCGATCAT 3162
Query 1362 GGACCAGACCGAGGAGTGGGTGGACAGCAACGGGGGCAAGAAGCTCGCTCGAGTCTTGCG 1421
||||||||||||||||||||| | ||||||| || || || | | | ||
Sbjct 3163 GGACCAGACCGAGGAGTGGGTCAAGGGCAACGGCGGTCTCCGCCTGGCGCAGAACATCCG 3222
Query 1422 GTCGAACGCCGCGAAGGTCGGCGGCACCGTGCTCGAGTCGCCGAACGCATTCATCCCCGG 1481
||| | |||||| ||||| | | ||||||| |||||||| |||| ||| ||
Sbjct 3223 CAACAACTCGACGAAGGCGTCCGGCATCACGATCGAGTCCCCGAACGCGTTCACCCCTGG 3282
Query 1482 TGAGAACTCGGTTGCAGAGGGCTCAGCCGCCTTCTGGGAC--GAT---ATCCGCG----- 1531
||||||||||| || |||| || || | |||||| ||| ||| | |
Sbjct 3283 CGAGAACTCGGTCGCCGAGGCATCCGCGCGCGACTGGGAGCTGATCGAATCTGGGAAATA 3342
Query 1532 -CCGG---TCGCGTTCGTGATACGTC-GTTGCTGTACGACACGCGAGAAGCGCCGCCAGA 1586
|| | ||||| || || | | | || |||||| || ||||||||| | ||
Sbjct 3343 CCCAGACCTCGCGGCCGCC---CGCCAGATCCTCTACGACCACCGCGAAGCGCCGGCCGA 3399
Query 1587 GACGGATATGTTCGACCGCGAGTCACTGCTCGCCGGCCTCCGTGTGGCGTACGGTGACAG 1646
|| || |||||||||||| ||| ||||||||||||| |||||||| |||||
Sbjct 3400 CACCGACCCCGCCGACCGCGAGTCCCTGATCGCCGGCCTCCGGTACGCGTACGGCGACAG 3459
Query 1647 CTCGGGCCATCCCGATGGCTGCGTGATCCACAACCCGCCATGCGAACCCGGC 1698
||||| ||| ||||| |||||||| |||||| | ||||| ||||| ||||||
Sbjct 3460 CTCGGACCACCCCGACGGCTGCGTCATCCACCAGCCGCCGTGCGAGCCCGGC 3511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 140514489268992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |