Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031234.1 Length=43982 Score E Sequences producing significant alignments: (Bits) Value seq63378 179 1e-40 >seq63378 Length=15302 Score = 179 bits (198), Expect = 1e-40 Identities = 474/712 (67%), Gaps = 44/712 (6%) Strand=Plus/Plus Query 1012 CGACCTCGAGGCTGGGGCAAGTCTCCTATCCTGGGAATGATTGCCCTGGGCGAGGCACTG 1071 ||||| ||||||||||||||||| || |||| | || | | | ||||| || || Sbjct 2819 CGACCCCGAGGCTGGGGCAAGTCCCCGTTCCTCGCCGCGACCGGCATCGGCGAAGCGCTC 2878 Query 1072 GGTCCAG-TGGTCTTTGACGGATGGGACGCGGACGGACAACCCGTCGGGCGTCCTTGGTC 1130 || || | ||| ||||| |||||||| ||||| || ||||||| || || ||| Sbjct 2879 T-TCGAGGTCGTCCCCGACGGCTGGGACGCCGACGGGCAGCCCGTCGCCCGCCCGTGGAT 2937 Query 1131 AGAGACACGGACCCCCATCGTGAACATCTCGG---CCGTG---TCCGAGGAGCAGGTCGA 1184 || ||| |||| ||| || ||| ||| | ||||| || ||||| | Sbjct 2938 CGACTTCAAGACGATCATC---AACGTCCCGGTCACCGCGACCTCCGATGACCAGGTGCA 2994 Query 1185 TAACACGTGGTCGCCCATGCTGGAGATGTTGCACGAGGACGCAGCGATCCATGACCACTA 1244 ||||||||| | || ||||| |||||| || | ||||| | || | || | Sbjct 2995 GAACACGTGGGCACCGATGCTCGAGATGGCGCGCACCGACGCG------CTTGTCAACGA 3048 Query 1245 CCCCGGCCTCGAGCCGATGGAGACGTTCATCTCGCTGCCGCGCGGTCGAGGTCGAATCGA 1304 || | |||| |||||||| ||||||||| || | || |||| | || |||| || Sbjct 3049 GTTCGACGTCGACCCGATGGACACGTTCATCGCGATCCCCGGCGG-CAAGATCGAGCCG- 3106 Query 1305 CAAGCTCACCGCGTCACCTCGTACTGTGAAGGG--TAAGCGTGCCA-TCTTCACGGTCAT 1361 | |||| |||| || | | ||||| | || || || | || |||| Sbjct 3107 ----CGCACCTCGTCCGGCCGGTCCATCAAGGGCCTCCCCGGGCAGGTCGCCGCGATCAT 3162 Query 1362 GGACCAGACCGAGGAGTGGGTGGACAGCAACGGGGGCAAGAAGCTCGCTCGAGTCTTGCG 1421 ||||||||||||||||||||| | ||||||| || || || | | | || Sbjct 3163 GGACCAGACCGAGGAGTGGGTCAAGGGCAACGGCGGTCTCCGCCTGGCGCAGAACATCCG 3222 Query 1422 GTCGAACGCCGCGAAGGTCGGCGGCACCGTGCTCGAGTCGCCGAACGCATTCATCCCCGG 1481 ||| | |||||| ||||| | | ||||||| |||||||| |||| ||| || Sbjct 3223 CAACAACTCGACGAAGGCGTCCGGCATCACGATCGAGTCCCCGAACGCGTTCACCCCTGG 3282 Query 1482 TGAGAACTCGGTTGCAGAGGGCTCAGCCGCCTTCTGGGAC--GAT---ATCCGCG----- 1531 ||||||||||| || |||| || || | |||||| ||| ||| | | Sbjct 3283 CGAGAACTCGGTCGCCGAGGCATCCGCGCGCGACTGGGAGCTGATCGAATCTGGGAAATA 3342 Query 1532 -CCGG---TCGCGTTCGTGATACGTC-GTTGCTGTACGACACGCGAGAAGCGCCGCCAGA 1586 || | ||||| || || | | | || |||||| || ||||||||| | || Sbjct 3343 CCCAGACCTCGCGGCCGCC---CGCCAGATCCTCTACGACCACCGCGAAGCGCCGGCCGA 3399 Query 1587 GACGGATATGTTCGACCGCGAGTCACTGCTCGCCGGCCTCCGTGTGGCGTACGGTGACAG 1646 || || |||||||||||| ||| ||||||||||||| |||||||| ||||| Sbjct 3400 CACCGACCCCGCCGACCGCGAGTCCCTGATCGCCGGCCTCCGGTACGCGTACGGCGACAG 3459 Query 1647 CTCGGGCCATCCCGATGGCTGCGTGATCCACAACCCGCCATGCGAACCCGGC 1698 ||||| ||| ||||| |||||||| |||||| | ||||| ||||| |||||| Sbjct 3460 CTCGGACCACCCCGACGGCTGCGTCATCCACCAGCCGCCGTGCGAGCCCGGC 3511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140514489268992