Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_031252.1 Length=51290 Score E Sequences producing significant alignments: (Bits) Value seq63545 150 6e-32 >seq63545 Length=90175 Score = 150 bits (166), Expect = 6e-32 Identities = 244/346 (71%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 30899 TGGCCGGTGAAACAACGATCACAGTGATCGGAAACCTGACGAACGATCCAGAGCTACGGT 30958 ||||||| ||||| ||||| ||| | || ||||| || || || ||||| || | Sbjct 74095 TGGCCGGCGAAACCGTCATCACGGTGGTGGGCAACCTCACCGCGGACCCGGAGCTGCGCT 74036 Query 30959 TCACGCCGTCTGGCAGCGCTGTCGCGAACTTCACGATCGCGAGCACACCGCGAACGTTCG 31018 ||||| | || ||| || ||||||||||| |||||| ||| || || ||||||| Sbjct 74035 ACACGCAGAACGGGCTCGCCGTGGCGAACTTCACCATCGCGTCCACCCCTCGCACGTTCG 73976 Query 31019 ATCGACAGTCAAACGAGTGGAAAGACGGCGAGACGCTCTTCCTGCGCGCTGCTGTCTGGC 31078 | || ||| | ||||||||||| |||||||| |||| ||||| || || || |||| Sbjct 73975 ACCGTCAGGCGAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCGTGCGAGCGTGTGGC 73916 Query 31079 GCGAGACTGCAGAGAATGTCGCAGAGTCCCTGCAGAAGGGCATGGAGGTCATCTGCGTCG 31138 ||||| || ||| | || || | || ||| ||||||| |||||| ||| | Sbjct 73915 GCGAGTTCGCCGAGCACGTGGCGGGCTCACTGACGAAGGGCTCCCGCGTCATC-GCGCAG 73857 Query 31139 GG-CGTCTGAAGTC-GCGCAGCTACGAGACGAAAGAGGGCGAGAAGCGCACTGTCATCGA 31196 || || || ||| |||| |||| || |||||| || ||||||| |||||| Sbjct 73856 GGTCGCCT-CCGTCAGCGCTCCTACCAGGACCGTGAGGGCCAGCAGCGCACGAGCATCGA 73798 Query 31197 GCTCGAAGTCGACAGCATCGGCCCGTCGCTGCGATGGGCGTCTGCG 31242 |||||| |||||| |||||||| ||||| || | ||| | ||| Sbjct 73797 GCTCGAGGTCGACGAGATCGGCCCCTCGCTCCGCTACGCGACCGCG 73752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163882409521536