Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq6171 167 2e-36 >seq6171 Length=36435 Score = 167 bits (184), Expect = 2e-36 Identities = 578/892 (65%), Gaps = 25/892 (3%) Strand=Plus/Minus Query 23218 TTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276 || ||||| |||||||| | |||| || || ||||| ||||| || | || || Sbjct 5256 TTCTGATACTCCCCAACTC-TCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAG 5198 Query 23277 TTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTTT 23334 ||||| ||||||||||||| || ||| || || ||| ||| | || | | Sbjct 5197 CTCCATCCAATCAAATGGATTCTGAGCATTGTA--CATCTTGTCATAACCCAAAGCATCC 5140 Query 23335 AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATT 23394 || | ||||| || |||||||| || |||| || ||||||||| || || || | Sbjct 5139 AACAATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACC 5080 Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454 || |||| |||||| | | ||| |||| || ||||||||| ||| Sbjct 5079 AGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATA 5020 Query 23455 ATTTGAACAATAACT---TCTTCACT-AGGTGGATATTTTAAATACTTAAACAATAAACA 23510 ||| | | ||| || ||| | || | | || | ||| || | ||||| Sbjct 5019 ATTC---CCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAA-AGCAAACA 4964 Query 23511 TGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCC 23570 ||||||||||| || | ||||| || || ||| || ||||| || || |||||||| Sbjct 4963 CGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCC 4904 Query 23571 TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAAT 23630 |||||||| || |||||||| | ||||||||| | | || |||| |||||||| Sbjct 4903 AGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAAT 4844 Query 23631 ACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAAT 23690 || |||||| ||||| ||||| | || | || ||| | | ||| || Sbjct 4843 CCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAACCATCG---AT 4787 Query 23691 CCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAA 23750 ||| | ||| || |||||| || ||||| || || || ||||| | Sbjct 4786 CCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGC----AC 4731 Query 23751 GAGAAAAGTT----TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806 | | || || ||||| ||| ||| |||| || | || | || ||||| |||| Sbjct 4730 GGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACA 4671 Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866 | || ||||| ||||| ||||| || || || |||||||| ||| | || |||| | Sbjct 4670 TCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAA 4611 Query 23867 ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAG 23926 || || || || | || ||| || | || || ||| || || || || | Sbjct 4610 CCTGGACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGG 4551 Query 23927 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAAT 23986 |||| || ||||| |||| | || |||||||||||| | | || || |||| ||| | Sbjct 4550 CAAAAAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGT 4491 Query 23987 CATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCT 24046 | | |||| |||| ||| ||||| || || ||||| ||| ||||| ||| || Sbjct 4490 GACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCT 4431 Query 24047 TATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098 | |||||| |||||| | || || ||||| || || ||||| ||| Sbjct 4430 TGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATC 4379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521072999849600