Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq6171 167 2e-36
>seq6171
Length=36435
Score = 167 bits (184), Expect = 2e-36
Identities = 578/892 (65%), Gaps = 25/892 (3%)
Strand=Plus/Minus
Query 23218 TTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCTCTAATGATATATT 23276
|| ||||| |||||||| | |||| || || ||||| ||||| || | || ||
Sbjct 5256 TTCTGATACTCCCCAACTC-TCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAG 5198
Query 23277 TTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTTT 23334
||||| ||||||||||||| || ||| || || ||| ||| | || | |
Sbjct 5197 CTCCATCCAATCAAATGGATTCTGAGCATTGTA--CATCTTGTCATAACCCAAAGCATCC 5140
Query 23335 AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATT 23394
|| | ||||| || |||||||| || |||| || ||||||||| || || || |
Sbjct 5139 AACAATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACC 5080
Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454
|| |||| |||||| | | ||| |||| || ||||||||| |||
Sbjct 5079 AGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATA 5020
Query 23455 ATTTGAACAATAACT---TCTTCACT-AGGTGGATATTTTAAATACTTAAACAATAAACA 23510
||| | | ||| || ||| | || | | || | ||| || | |||||
Sbjct 5019 ATTC---CCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAA-AGCAAACA 4964
Query 23511 TGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCC 23570
||||||||||| || | ||||| || || ||| || ||||| || || ||||||||
Sbjct 4963 CGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCC 4904
Query 23571 TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAAT 23630
|||||||| || |||||||| | ||||||||| | | || |||| ||||||||
Sbjct 4903 AGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAAT 4844
Query 23631 ACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAAT 23690
|| |||||| ||||| ||||| | || | || ||| | | ||| ||
Sbjct 4843 CCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAACCATCG---AT 4787
Query 23691 CCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAA 23750
||| | ||| || |||||| || ||||| || || || ||||| |
Sbjct 4786 CCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGC----AC 4731
Query 23751 GAGAAAAGTT----TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806
| | || || ||||| ||| ||| |||| || | || | || ||||| ||||
Sbjct 4730 GGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACA 4671
Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866
| || ||||| ||||| ||||| || || || |||||||| ||| | || |||| |
Sbjct 4670 TCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAA 4611
Query 23867 ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAG 23926
|| || || || | || ||| || | || || ||| || || || || |
Sbjct 4610 CCTGGACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGG 4551
Query 23927 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAAT 23986
|||| || ||||| |||| | || |||||||||||| | | || || |||| ||| |
Sbjct 4550 CAAAAAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGT 4491
Query 23987 CATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCT 24046
| | |||| |||| ||| ||||| || || ||||| ||| ||||| ||| ||
Sbjct 4490 GACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCT 4431
Query 24047 TATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATC 24098
| |||||| |||||| | || || ||||| || || ||||| |||
Sbjct 4430 TGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATC 4379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521072999849600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |