Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq3212 102 2e-16
seq3179 100 6e-16
seq2897 100 6e-16
seq24765 98.7 2e-15
seq23814 98.7 2e-15
seq21155 98.7 2e-15
seq11694 98.7 2e-15
seq10518 98.7 2e-15
seq5902 98.7 2e-15
seq5738 98.7 2e-15
seq4549 98.7 2e-15
seq4288 98.7 2e-15
seq3217 98.7 2e-15
seq1289 98.7 2e-15
seq1189 98.7 2e-15
seq730 98.7 2e-15
seq728 98.7 2e-15
seq11682 95.1 3e-14
seq11493 95.1 3e-14
seq9213 95.1 3e-14
seq1430 86.0 1e-11
>seq3212
Length=13643
Score = 102 bits (112), Expect = 2e-16
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
|||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||
Sbjct 13312 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 13253
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 13252 GCCCCACGGTGGGC 13239
>seq3179
Length=15064
Score = 100 bits (110), Expect = 6e-16
Identities = 72/83 (87%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758
||||| || |||||||||||||||| |||||||||| || || |||| || |||||||
Sbjct 357 TTAAACAACTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 298
Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781
||||||||||||||||| |||||
Sbjct 297 TGGGTTCGAGCCCCACGGTGGGC 275
>seq2897
Length=74306
Score = 100 bits (110), Expect = 6e-16
Identities = 70/80 (88%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761
|||| | |||||||||||||||| |||||||||| || || |||| || ||||||||||
Sbjct 22528 AAACACAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 22587
Query 165762 GTTCGAGCCCCACGATGGGC 165781
|||||||||||||| |||||
Sbjct 22588 GTTCGAGCCCCACGGTGGGC 22607
>seq24765
Length=14368
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 9044 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8985
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 8984 CCCACGGTGGGC 8973
>seq23814
Length=25482
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 3535 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3594
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 3595 CCCACGGTGGGC 3606
>seq21155
Length=35007
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 2821 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2880
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2881 CCCACGGTGGGC 2892
>seq11694
Length=37099
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 5166 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5107
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 5106 CCCACGGTGGGC 5095
>seq10518
Length=16916
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6618 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6677
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6678 CCCACGGTGGGC 6689
>seq5902
Length=37122
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6087 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6028
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6027 CCCACGGTGGGC 6016
>seq5738
Length=32166
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 10979 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11038
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 11039 CCCACGGTGGGC 11050
>seq4549
Length=49622
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 16726 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16667
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 16666 CCCACGGTGGGC 16655
>seq4288
Length=26724
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 16254 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16313
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 16314 CCCACGGTGGGC 16325
>seq3217
Length=28472
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 17740 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17681
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 17680 CCCACGGTGGGC 17669
Score = 95.1 bits (104), Expect = 3e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766
|| |||||||||||||||| |||||||||| || || |||| || ||||| |||||||||
Sbjct 22064 CTGGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTTGTGGGTTCG 22005
Query 165767 AGCCCCACGATGGGC 165781
||||||||| |||||
Sbjct 22004 AGCCCCACGGTGGGC 21990
>seq1289
Length=58079
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 48928 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 48869
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 48868 CCCACGGTGGGC 48857
>seq1189
Length=15210
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 559 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 500
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 499 CCCACGGTGGGC 488
>seq730
Length=67974
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 28864 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 28923
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 28924 CCCACGGTGGGC 28935
>seq728
Length=46982
Score = 98.7 bits (108), Expect = 2e-15
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 230390 TTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA 230449
|| |||| || || || | |||| ||||||| | ||||| ||| |||| ||| ||
Sbjct 2192 TTGCAGATGCTGTGGAGATAGAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGG 2133
Query 230450 TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTG 230509
| || ||||| | || | ||| | | ||||| || || ||||| ||| | | || |
Sbjct 2132 TGGGAATGAATGGAGATTTGATGAGTAAATACATAGAGTTTGTAGCTGACAGATTGTTGG 2073
Query 230510 TTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCA 230569
||| | ||||| || || ||||||| || |||| || |||| | |||||||| |
Sbjct 2072 ATGCTTTGGGTTATGACAAGATGTACAATGCTCAGAATCCATTTGATTGGATGGAGCTGA 2013
Query 230570 TTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623
|| | ||||||||||| || ||||| || ||| | || | || |||||||
Sbjct 2012 TTAGTTTACAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGA 1959
>seq11682
Length=23603
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || |||||||||||||| |||
Sbjct 979 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCAAGC 920
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 919 CCCACGGTGGGC 908
>seq11493
Length=26591
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || |||||||||||||| |||
Sbjct 24444 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCAAGC 24503
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 24504 CCCACGGTGGGC 24515
>seq9213
Length=20469
Score = 95.1 bits (104), Expect = 3e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| | ||||||||||||||||||
Sbjct 19300 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACTTTGTGGTCGTGGGTTCGAGC 19359
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 19360 CCCACGGTGGGC 19371
>seq1430
Length=1254
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/74 (86%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT--TCGA 165767
|||||||||||||||| ||| |||||| || || |||| || |||||||||||| ||||
Sbjct 491 GCCCGTCTAGCTCAGTTGGTTGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCTCGA 550
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 551 GCCCCACGGTGGGC 564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057241340623700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |