Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq728 141 9e-29 >seq728 Length=46982 Score = 141 bits (156), Expect = 9e-29 Identities = 378/561 (67%), Gaps = 15/561 (3%) Strand=Plus/Plus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 |||||| || || || || | ||||||||||| || | || || || || ||||| Sbjct 2248 ACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAA 2307 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA-AAGA 16319 || |||||| || ||||| || ||||| ||||||| | || | | ||| |||| Sbjct 2308 TCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAA-CAGAAGCTTCCGCTGAAGA 2366 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || |||||| | |||||||| | || || |||||| | || | || | Sbjct 2367 AAATCCCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGGTTTCGGACCCAT--C 2424 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 || |||| | |||||| || || | || | |||| || || || || || Sbjct 2425 GA-TCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATTGTCTCAATCGCAC 2483 Query 16440 TAAACAATTT-CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 |||||||| ||||||| | | | ||| | || |||| || | ||| ||||||||| Sbjct 2484 GGAACAATTTGCTCTTTT-CGTCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTAC 2542 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGC 16557 || || || || || ||||| ||||| || || || |||||| ||||| ||| |||| || Sbjct 2543 ATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGAACCTCGGC 2601 Query 16558 TATTTGTACTTC-CACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || || | | || | |||| || |||||||| ||||| ||||| Sbjct 2602 AACCTGGACGTCTTTCATGAA--CCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAG 2659 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 ||||||||||| || | | || | ||||||| |||| | ||||| || | | | Sbjct 2660 GCAGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGATGTTAGGTTTTCC 2719 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACTGC 16734 || | ||| |||| | ||| ||||||||| |||||| |||| | |||| || Sbjct 2720 CAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAAGAT-GCCATGGC 2778 Query 16735 CTTTTTATACATTTTCCAAAT 16755 || || ||||||| |||||| Sbjct 2779 TTTCTTGTACATTTCCCAAAT 2799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511139578686800