Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq796 96.9 3e-15 seq572 84.2 2e-11 >seq796 Length=44438 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | || || ||||| ||||| || |||||| || |||| | | Sbjct 19744 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 19803 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | | ||| || ||| || ||||| ||| | || ||| || Sbjct 19804 CGACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 19863 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| | || ||||| ||||| || ||||||||| | || | ||||||||||| Sbjct 19864 GCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 19923 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||| |||||||| || ||||| | ||||| Sbjct 19924 TATTCAGAAGGAATCAACCCTTCATCTTGTGTT 19956 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25027 GTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGG 25086 ||||| | ||||| ||||| ||||||| | || || || ||||| ||| || || Sbjct 18597 GTGTACAGATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGG 18656 Query 25087 AACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCG 25146 || | |||| || | | | | | || || || || || ||||| | ||| Sbjct 18657 AAAGCTCAGACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCC 18716 Query 25147 TAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCG 25206 ||| || || || || |||||||||||||| || | |||||| | || | |||| Sbjct 18717 CAGACCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCG 18776 Query 25207 ATTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||| |||||||| || || ||||||||| ||||| Sbjct 18777 ATTACAACATTCAAAAAGAGTCCACTCTTCACTTGGTG 18814 >seq572 Length=122185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || ||||| || ||||| || ||||| || ||||| |||||| Sbjct 88079 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAGTTGGAA 88020 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | || |||||||| ||||| || ||||| ||||||||| Sbjct 88019 GATGGGAGAACCCTCGCTGATTACAACATTCAGAAAGAATCAACTCTTCAC 87969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410581566867860