Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq796 96.9 3e-15
seq572 84.2 2e-11
>seq796
Length=44438
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093
||||||||| ||| | || || ||||| ||||| || |||||| || |||| | |
Sbjct 19744 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTC 19803
Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153
|| || | | | | | ||| || ||| || ||||| ||| | || ||| ||
Sbjct 19804 CGACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 19863
Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213
||||| | || ||||| ||||| || ||||||||| | || | |||||||||||
Sbjct 19864 GCAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 19923
Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246
|||||| |||||||| || ||||| | |||||
Sbjct 19924 TATTCAGAAGGAATCAACCCTTCATCTTGTGTT 19956
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 25027 GTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGG 25086
||||| | ||||| ||||| ||||||| | || || || ||||| ||| || ||
Sbjct 18597 GTGTACAGATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGG 18656
Query 25087 AACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCG 25146
|| | |||| || | | | | | || || || || || ||||| | |||
Sbjct 18657 AAAGCTCAGACACCATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCC 18716
Query 25147 TAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCG 25206
||| || || || || |||||||||||||| || | |||||| | || | ||||
Sbjct 18717 CAGACCAGCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCG 18776
Query 25207 ATTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244
||||||| |||||||| || || ||||||||| |||||
Sbjct 18777 ATTACAACATTCAAAAAGAGTCCACTCTTCACTTGGTG 18814
>seq572
Length=122185
Score = 84.2 bits (92), Expect = 2e-11
Identities = 85/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||||||||| | || ||||| || ||||| || ||||| || ||||| ||||||
Sbjct 88079 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAGTTGGAA 88020
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238
||| | ||| | || |||||||| ||||| || ||||| |||||||||
Sbjct 88019 GATGGGAGAACCCTCGCTGATTACAACATTCAGAAAGAATCAACTCTTCAC 87969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410581566867860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |