Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq545 114 2e-20 seq796 109 8e-19 seq3886 104 4e-17 seq558 102 1e-16 seq572 96.9 5e-15 seq544 87.8 3e-12 >seq545 Length=31085 Score = 114 bits (126), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | || || || || || || ||||||||| | ||| | || ||| Sbjct 2184 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2243 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || || |||| | ||| ||||||||||| || |||||||| || || || | Sbjct 2244 A-GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 2302 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||| || ||||| | || ||| | |||||| | | ||||| | Sbjct 2303 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 2362 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || |||||||| || || | || | || | ||| |||| ||||| || Sbjct 2363 ACATCCAAAAAGAGTCTACCCTTCACCTTGTCCTCCGTCTACGTGGTGGAAT 2414 Score = 113 bits (124), Expect = 7e-20 Identities = 172/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || | Sbjct 2869 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 2928 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || ||| ||||| || || || ||||| || || ||||| || || || | Sbjct 2929 -GATACCATCGACAATGTTAAAGCA-AAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 2986 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | || ||||| ||||| ||| | |||||| | | || || | |||||| | Sbjct 2987 AGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACA 3046 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | ||||| ||||||||||| |||| | ||| | || | ||||||| || ||| || Sbjct 3047 ACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCATGCAAATTT 3106 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | || || || || || || ||||||||| | ||| | || ||| Sbjct 2412 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2471 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || || |||| | ||| ||||||||||| || |||||||| || || || | Sbjct 2472 A-GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 2530 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||| || ||||| | || ||| | |||||| | | ||||| | Sbjct 2531 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 2590 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| || || || | || | || | || | || |||||||| Sbjct 2591 ACATCCAAAAGGAGTCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGTAT 2642 >seq796 Length=44438 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || ||||| || || || | ||| | ||| | Sbjct 19517 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 19576 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||| || ||||||||||| ||||| || || Sbjct 19577 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 19636 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| ||||| || || || ||| | | ||||||| ||||| || Sbjct 19637 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAAC 19696 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| | ||| | |||||||| || Sbjct 19697 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAAT 19746 >seq3886 Length=20373 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || || || || ||||| || ||||| | ||| | Sbjct 14137 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 14078 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| || | || || || || || || ||||| || || |||||||| Sbjct 14077 GATACAATCGACAACGTTAAGGCTAAGATCCAGGACAAGGAAGGGATTCCCCCTGATCAG 14018 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| || || ||||| || || ||||| | || || ||| |||||||| Sbjct 14017 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGGACTCTAGCTGATTATAAC 13958 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | ||| |||| |||||||| Sbjct 13957 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTACGTGGTGGTAT 13908 >seq558 Length=67963 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| ||||| ||||| ||||| || ||||| | || || Sbjct 63633 AATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACTATTACCTTAGAGGTAGAGTCATC 63692 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || || ||||| || || ||||| || ||||| || || Sbjct 63693 AGACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGCATCCCACCAGACCA 63752 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | |||||||||||||| || | |||||| | ||||| ||| || || || Sbjct 63753 GCAGAGGTTGATTTTTGCAGGAAAGCAGCTTGAGGATGGCCGAACGCTAGCTGACTACAA 63812 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || || ||||| || | || | || | ||| | || |||||| Sbjct 63813 CATCCAGAAGGAATCCACCCTCCACCTTGTGCTTCGTCTCCGTGGTGGT 63861 >seq572 Length=122185 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || ||||||||||| ||||| |||||||| || || || |||||||| |||||||| || Sbjct 88082 CAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAGTTG 88023 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 || ||| | |||| | | ||||| || ||||| |||||||||||| Sbjct 88022 GAAGATGGGAGAACCCTCGCTGATTACAACATTCAGAAAGAATCAACT 87975 >seq544 Length=28317 Score = 87.8 bits (96), Expect = 3e-12 Identities = 168/241 (70%), Gaps = 5/241 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || | Sbjct 21846 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 21787 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAA-GAAGGTATACCACCTGAT 124655 ||||| || ||| ||||| || || || ||||| ||| || ||||| || || | Sbjct 21786 -GATACTATCAACAATGTTAAAGCA-AAGATCCAAGACAAAGGAGGGTATTCCTCCAAAC 21729 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || || | || ||||| ||| | ||| | || ||| | | || || | |||||| Sbjct 21728 CAGCAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTAC 21669 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || ||||| ||| | ||||| |||| | ||| | ||| | |||| || || ||| | Sbjct 21668 AACATTCAGAAACAGTCAACCCTGCACCTTGTTCTTCGTCTTAGAGGCGGCATGCAAATT 21609 Query 124776 T 124776 | Sbjct 21608 T 21608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755050036832000