Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq545 114 2e-20
seq796 109 8e-19
seq3886 104 4e-17
seq558 102 1e-16
seq572 96.9 5e-15
seq544 87.8 3e-12
>seq545
Length=31085
Score = 114 bits (126), Expect = 2e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596
||||||||| ||| | || || || || || || ||||||||| | ||| | || |||
Sbjct 2184 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2243
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
| || || || |||| | ||| ||||||||||| || |||||||| || || || |
Sbjct 2244 A-GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 2302
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| || ||||| || ||||| || ||||| | || ||| | |||||| | | ||||| |
Sbjct 2303 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 2362
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
| || |||||||| || || | || | || | ||| |||| ||||| ||
Sbjct 2363 ACATCCAAAAAGAGTCTACCCTTCACCTTGTCCTCCGTCTACGTGGTGGAAT 2414
Score = 113 bits (124), Expect = 7e-20
Identities = 172/240 (72%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || |
Sbjct 2869 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 2928
Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
||||| || ||| ||||| || || || ||||| || || ||||| || || || |
Sbjct 2929 -GATACCATCGACAATGTTAAAGCA-AAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 2986
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| || || | || ||||| ||||| ||| | |||||| | | || || | |||||| |
Sbjct 2987 AGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACA 3046
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
| ||||| ||||||||||| |||| | ||| | || | ||||||| || ||| ||
Sbjct 3047 ACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCATGCAAATTT 3106
Score = 105 bits (116), Expect = 1e-17
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596
||||||||| ||| | || || || || || || ||||||||| | ||| | || |||
Sbjct 2412 AATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTC 2471
Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
| || || || |||| | ||| ||||||||||| || |||||||| || || || |
Sbjct 2472 A-GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 2530
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| || ||||| || ||||| || ||||| | || ||| | |||||| | | ||||| |
Sbjct 2531 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 2590
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
| || ||||| || || || | || | || | || | || ||||||||
Sbjct 2591 ACATCCAAAAGGAGTCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGTAT 2642
>seq796
Length=44438
Score = 109 bits (120), Expect = 8e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | ||||| | || ||||| || || || | ||| | ||| |
Sbjct 19517 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 19576
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || |||||||| || ||||||||||| ||||| || ||
Sbjct 19577 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 19636
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||| | || ||||| ||||| || || || ||| | | ||||||| ||||| ||
Sbjct 19637 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAAC 19696
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || ||||| | || ||||| | ||| | |||||||| ||
Sbjct 19697 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGAGGTGGAAT 19746
>seq3886
Length=20373
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | || || || || || || ||||| || ||||| | ||| |
Sbjct 14137 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 14078
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|||||||| || | || || || || || || ||||| || || ||||||||
Sbjct 14077 GATACAATCGACAACGTTAAGGCTAAGATCCAGGACAAGGAAGGGATTCCCCCTGATCAG 14018
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||||||||| || || ||||| || || ||||| | || || ||| ||||||||
Sbjct 14017 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGGACTCTAGCTGATTATAAC 13958
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || || || | |||||||| | ||| |||| ||||||||
Sbjct 13957 ATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTACGTGGTGGTAT 13908
>seq558
Length=67963
Score = 102 bits (112), Expect = 1e-16
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | ||||| ||||| ||||| ||||| || ||||| | || ||
Sbjct 63633 AATGCAGATCTTTGTGAAGACCCTAACGGGCAAGACTATTACCTTAGAGGTAGAGTCATC 63692
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| ||| | || || ||||| || || ||||| || ||||| || ||
Sbjct 63693 AGACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAGGAAGGCATCCCACCAGACCA 63752
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||| | |||||||||||||| || | |||||| | ||||| ||| || || ||
Sbjct 63753 GCAGAGGTTGATTTTTGCAGGAAAGCAGCTTGAGGATGGCCGAACGCTAGCTGACTACAA 63812
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|| || || ||||| || | || | || | ||| | || ||||||
Sbjct 63813 CATCCAGAAGGAATCCACCCTCCACCTTGTGCTTCGTCTCCGTGGTGGT 63861
>seq572
Length=122185
Score = 96.9 bits (106), Expect = 5e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688
|| ||||||||||| ||||| |||||||| || || || |||||||| |||||||| ||
Sbjct 88082 CAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAGTTG 88023
Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736
|| ||| | |||| | | ||||| || ||||| ||||||||||||
Sbjct 88022 GAAGATGGGAGAACCCTCGCTGATTACAACATTCAGAAAGAATCAACT 87975
>seq544
Length=28317
Score = 87.8 bits (96), Expect = 3e-12
Identities = 168/241 (70%), Gaps = 5/241 (2%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || |
Sbjct 21846 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 21787
Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAA-GAAGGTATACCACCTGAT 124655
||||| || ||| ||||| || || || ||||| ||| || ||||| || || |
Sbjct 21786 -GATACTATCAACAATGTTAAAGCA-AAGATCCAAGACAAAGGAGGGTATTCCTCCAAAC 21729
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|| || || | || ||||| ||| | ||| | || ||| | | || || | ||||||
Sbjct 21728 CAGCAGAGATTGATATTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTAC 21669
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775
|| ||||| ||| | ||||| |||| | ||| | ||| | |||| || || ||| |
Sbjct 21668 AACATTCAGAAACAGTCAACCCTGCACCTTGTTCTTCGTCTTAGAGGCGGCATGCAAATT 21609
Query 124776 T 124776
|
Sbjct 21608 T 21608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755050036832000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |