Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq30006 116 4e-21
seq558 100 3e-16
seq3886 98.7 1e-15
seq545 95.1 1e-14
seq16835 93.3 5e-14
seq796 91.5 2e-13
seq658 82.4 9e-11
>seq30006
Length=21699
Score = 116 bits (128), Expect = 4e-21
Identities = 145/195 (74%), Gaps = 3/195 (2%)
Strand=Plus/Minus
Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| ||||| ||||||||||| ||||| || | || || |||||||| || |||||
Sbjct 12894 CCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 12835
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| | |||||||||||| | || | | ||||||| | ||| | || | ||||| |
Sbjct 12834 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 12776
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||||| ||||| || || | |||||| || || ||||| || || || ||
Sbjct 12775 GTCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCAC 12716
Query 43172 AAAGATTTGCATTTT 43186
||||| ||||||||
Sbjct 12715 GAAGATCTGCATTTT 12701
>seq558
Length=67963
Score = 100 bits (110), Expect = 3e-16
Identities = 142/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| ||||| || || || | || || ||||||||||| |||||
Sbjct 17127 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 17186
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | |||||||||||| | || | || ||||||| | ||| | || | | | | |
Sbjct 17187 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACAT 17245
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| || || || || | || || || |||||||| || ||||| |
Sbjct 17246 TGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCA 17305
Query 43171 CAAAGATTTGCATTTTT 43187
||||||| |||||||||
Sbjct 17306 CAAAGATCTGCATTTTT 17322
Score = 89.7 bits (98), Expect = 6e-13
Identities = 139/196 (71%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||| ||||| || || || | || || |||||||| || || ||
Sbjct 63824 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCTGCAAAA 63765
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| | | ||||||||| | || | || ||||||||| ||| | || | | | | |
Sbjct 63764 ATCAACCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACATT 63706
Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| || | |||| || || || || | || || || ||||||||||| ||||| ||
Sbjct 63705 GTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 63646
Query 43172 AAAGATTTGCATTTTT 43187
|||||| |||||||||
Sbjct 63645 AAAGATCTGCATTTTT 63630
>seq3886
Length=20373
Score = 98.7 bits (108), Expect = 1e-15
Identities = 161/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015
|||||| || | | | |||||| |||| || ||||||||| || ||||| || ||
Sbjct 12998 TCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGC 13057
Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075
|| ||| || | || || |||||||| ||||| || || | | ||||||||| | ||
Sbjct 13058 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 13117
Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTC 43132
| | ||||||||| ||| || |||| | | | |||||| ||| ||
Sbjct 13118 AATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTC---TC 13174
Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct 13175 AACCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225
Score = 93.3 bits (102), Expect = 5e-14
Identities = 141/197 (72%), Gaps = 8/197 (4%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || |||||||| ||||| || || || | || || |||||||||||||||||
Sbjct 12806 CTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 12865
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| | | ||||||||| | || | | |||||||||| ||| | || | ||| |
Sbjct 12866 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTAGCTTTCACAT 12924
Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| | | ||||| ||| ||||| || | |||||||| || || || | ||||
Sbjct 12925 TGTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCT 12981
Query 43168 TTACAAAGATTTGCATT 43184
| |||||||| ||||||
Sbjct 12982 TCACAAAGATCTGCATT 12998
Score = 89.7 bits (98), Expect = 6e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || || || || |||| || |||||||||||||||||
Sbjct 13262 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 13321
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | | ||||||||| | || | | |||||||||| ||| || || | |
Sbjct 13322 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 13381
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||| |||||| || | |||||||| || || || || ||||| ||
Sbjct 13382 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCAC 13441
Query 43172 AAAGATTTGCAT 43183
||| || |||||
Sbjct 13442 AAAAATCTGCAT 13453
>seq545
Length=31085
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|||||||| ||||||||||||| ||| | || |||||| || || ||||| || ||
Sbjct 3551 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3492
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||||| | | || || || || |||||||| || || | ||||| ||||| | ||
Sbjct 3491 AGAGTCCTCCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3432
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 43134
| | |||||||| | ||| | |||| || | | | || | || || | || |
Sbjct 3431 ATACCCTCCTTGT-CTTGAATCTTTGCTTTCACATTGTCAATG-GTATCTGAACTCTCAA 3374
Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || | ||||| || || || || | ||||| |||||||| |||||
Sbjct 3373 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/149 (74%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|||||||| ||||||||||||| ||| | || |||||| || || ||||| || ||
Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||||| | | || || || || |||||||| || || | ||||| ||||| | ||
Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTT 43105
| | |||||||| | ||| | |||| ||
Sbjct 3203 ATACCCTCCTTGT-CTTGAATCTTTGCTT 3176
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||| || ||||||||||| |||||||| |||| | || || || ||||| || || ||
Sbjct 2832 CTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAA 2773
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| |||| ||||||||| | || | | ||||||||| ||| |||| | | |||
Sbjct 2772 GATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTGTCC-TGAATTTTGGCCTTCACGT 2714
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || ||| ||| || || | |||||||| || || || || ||||| |
Sbjct 2713 TGTCAATGGTATCGGAACTTTCAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGA 2654
Query 43171 CAAAGATTTGCAT 43183
||||||| |||||
Sbjct 2653 CAAAGATCTGCAT 2641
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/197 (71%), Gaps = 8/197 (4%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||||||||| || ||||||||||| || || || | || || ||||| || ||||| ||
Sbjct 2604 CTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAA 2545
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| || | ||||||||| | || | | ||||||| | ||| |||| | |||||
Sbjct 2544 GATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTGACAT 2486
Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| | | ||||| |||| || || || | || || || || || || || || |
Sbjct 2485 TATCGATGGTGTCTGAGCTC---TCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTT 2429
Query 43168 TTACAAAGATTTGCATT 43184
| |||||||||||||||
Sbjct 2428 TAACAAAGATTTGCATT 2412
>seq16835
Length=8075
Score = 93.3 bits (102), Expect = 5e-14
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||| | ||| | ||| |||||| || || ||||| || || ||||| || |
Sbjct 6886 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 6945
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| || |||||||| || ||||| || | ||||||||||| | || | | |||||
Sbjct 6946 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 7005
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
|||| ||| || ||||| | | | |||||| || || || || | |||||
Sbjct 7006 GTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 7065
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| || |||||||| || || || ||||| ||||| ||
Sbjct 7066 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 7104
>seq796
Length=44438
Score = 91.5 bits (100), Expect = 2e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||||||||| || |||| |||| || |||||||| || || ||
Sbjct 19251 TCCTTYTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCAAAG 19192
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| | || ||||||||| | || | || ||||||||| ||| || ||| | |
Sbjct 19191 ATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTG 19132
Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | |||||| ||| || || | |||||||| || || || | ||||| |||
Sbjct 19131 TCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACA 19072
Query 43173 AAGATTTGCATT 43184
|| |||||||||
Sbjct 19071 AAAATTTGCATT 19060
>seq658
Length=14909
Score = 82.4 bits (90), Expect = 9e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| |||| || || ||| ||||||||| |||| |||||||||||||||| ||||
Sbjct 4934 AAAAAATTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 4993
Query 60117 TCACCACTATACTAC 60131
| |||||||||||||
Sbjct 4994 TTACCACTATACTAC 5008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571510319517200
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