Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq30006 116 4e-21 seq558 100 3e-16 seq3886 98.7 1e-15 seq545 95.1 1e-14 seq16835 93.3 5e-14 seq796 91.5 2e-13 seq658 82.4 9e-11 >seq30006 Length=21699 Score = 116 bits (128), Expect = 4e-21 Identities = 145/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||||||||| ||||| || | || || |||||||| || ||||| Sbjct 12894 CCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 12835 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | |||||||||||| | || | | ||||||| | ||| | || | ||||| | Sbjct 12834 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGT-CTTGAATCTTAGCTTTGACATT 12776 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||||| ||||| || || | |||||| || || ||||| || || || || Sbjct 12775 GTCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCAC 12716 Query 43172 AAAGATTTGCATTTT 43186 ||||| |||||||| Sbjct 12715 GAAGATCTGCATTTT 12701 >seq558 Length=67963 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || | || || ||||||||||| ||||| Sbjct 17127 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAA 17186 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | || ||||||| | ||| | || | | | | | Sbjct 17187 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGT-CTTGAATCTTAGCCTTAACAT 17245 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || || | || || || |||||||| || ||||| | Sbjct 17246 TGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCA 17305 Query 43171 CAAAGATTTGCATTTTT 43187 ||||||| ||||||||| Sbjct 17306 CAAAGATCTGCATTTTT 17322 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||| || || || | || || |||||||| || || || Sbjct 63824 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCAAGCTGCTTTCCTGCAAAA 63765 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | | ||||||||| | || | || ||||||||| ||| | || | | | | | Sbjct 63764 ATCAACCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCC-TGAATCTTAGCCTTAACATT 63706 Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | || | |||| || || || || | || || || ||||||||||| ||||| || Sbjct 63705 GTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 63646 Query 43172 AAAGATTTGCATTTTT 43187 |||||| ||||||||| Sbjct 63645 AAAGATCTGCATTTTT 63630 >seq3886 Length=20373 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | | | |||||| |||| || ||||||||| || ||||| || || Sbjct 12998 TCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGC 13057 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||| || | || || |||||||| ||||| || || | | ||||||||| | || Sbjct 13058 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 13117 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTC 43132 | | ||||||||| ||| || |||| | | | |||||| ||| || Sbjct 13118 AATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTC---TC 13174 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||||||||| || || || ||||| |||||||||||||| Sbjct 13175 AACCTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| ||||| || || || | || || ||||||||||||||||| Sbjct 12806 CTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 12865 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | | ||||||||| | || | | |||||||||| ||| | || | ||| | Sbjct 12866 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC-TGAATCTTAGCTTTCACAT 12924 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| ||||| || | |||||||| || || || | |||| Sbjct 12925 TGTCGATGGTGTCAGAACTC---TCCACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCT 12981 Query 43168 TTACAAAGATTTGCATT 43184 | |||||||| |||||| Sbjct 12982 TCACAAAGATCTGCATT 12998 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || ||||||||||||||||| Sbjct 13262 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 13321 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | |||||||||| ||| || || | | Sbjct 13322 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 13381 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| |||||| || | |||||||| || || || || ||||| || Sbjct 13382 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCAC 13441 Query 43172 AAAGATTTGCAT 43183 ||| || ||||| Sbjct 13442 AAAAATCTGCAT 13453 >seq545 Length=31085 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||||||||||| ||| | || |||||| || || ||||| || || Sbjct 3551 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3492 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | | || || || || |||||||| || || | ||||| ||||| | || Sbjct 3491 AGAGTCCTCCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3432 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 43134 | | |||||||| | ||| | |||| || | | | || | || || | || | Sbjct 3431 ATACCCTCCTTGT-CTTGAATCTTTGCTTTCACATTGTCAATG-GTATCTGAACTCTCAA 3374 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| || || || || | ||||| |||||||| ||||| Sbjct 3373 CCTCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||||||||||| ||| | || |||||| || || ||||| || || Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||||| | | || || || || |||||||| || || | ||||| ||||| | || Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 | | |||||||| | ||| | |||| || Sbjct 3203 ATACCCTCCTTGT-CTTGAATCTTTGCTT 3176 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||||||||| |||||||| |||| | || || || ||||| || || || Sbjct 2832 CTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCCTCAAGTTGCTTGCCGGCAAA 2773 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||| ||||||||| | || | | ||||||||| ||| |||| | | ||| Sbjct 2772 GATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTGTCC-TGAATTTTGGCCTTCACGT 2714 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| ||| || || | |||||||| || || || || ||||| | Sbjct 2713 TGTCAATGGTATCGGAACTTTCAACTTCAAGGGTGATGGTCTTTCCAGTAAGTGTCTTGA 2654 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 2653 CAAAGATCTGCAT 2641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||||||||| || || || | || || ||||| || ||||| || Sbjct 2604 CTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAA 2545 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || | ||||||||| | || | | ||||||| | ||| |||| | ||||| Sbjct 2544 GATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGT-CTTGAATTTTAGCTTTGACAT 2486 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | || || || || || || || || | Sbjct 2485 TATCGATGGTGTCTGAGCTC---TCGACCTCAAGAGTTATAGTCTTCCCGGTCAGAGTTT 2429 Query 43168 TTACAAAGATTTGCATT 43184 | ||||||||||||||| Sbjct 2428 TAACAAAGATTTGCATT 2412 >seq16835 Length=8075 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||| | ||| |||||| || || ||||| || || ||||| || | Sbjct 6886 ACGGAGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 6945 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | ||||||||||| | || | | ||||| Sbjct 6946 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 7005 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || ||||| | | | |||||| || || || || | ||||| Sbjct 7006 GTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 7065 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || |||||||| || || || ||||| ||||| || Sbjct 7066 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 7104 >seq796 Length=44438 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||||||||| || |||| |||| || |||||||| || || || Sbjct 19251 TCCTTYTGGATGTTGTAATCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCAAAG 19192 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | || ||||||||| | || | || ||||||||| ||| || ||| | | Sbjct 19191 ATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACATTG 19132 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| ||| || || | |||||||| || || || | ||||| ||| Sbjct 19131 TCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACA 19072 Query 43173 AAGATTTGCATT 43184 || ||||||||| Sbjct 19071 AAAATTTGCATT 19060 >seq658 Length=14909 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 4934 AAAAAATTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 4993 Query 60117 TCACCACTATACTAC 60131 | ||||||||||||| Sbjct 4994 TTACCACTATACTAC 5008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571510319517200