Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq545 105 4e-18
seq3886 104 2e-17
seq16835 95.1 8e-15
seq558 95.1 8e-15
seq30006 89.7 3e-13
seq4902 89.7 3e-13
>seq545
Length=31085
Score = 105 bits (116), Expect = 4e-18
Identities = 167/234 (71%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || |||||||| || || || | |||| |||||||| ||||| ||||| |
Sbjct 3779 CCGCCACGGAGCCTCAGGACAAGATGAAGAGTAGACTCTTTCTGGATGTTATAGTCTGCA 3720
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281
|| || | || || | |||||| || || || ||||||| ||| || || | |||
Sbjct 3719 AGGGTGCGACCATCCTCAAGCTGCTTACCAGCAAAGATGAGCCTCTGTTGATCTGGTGGG 3660
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| || |||||||| ||||||| ||||| | || | | || | ||| | || |
Sbjct 3659 ATCCCT-TCCTTGTCCTGTATCTTT-GCTTTCACATTGTCAATAGTATCAGAGCTCTCCA 3602
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394
| |||| ||||| || || || || ||||| |||||||||||||||||| |||
Sbjct 3601 CCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCATCCCTC 3548
>seq3886
Length=20373
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || || ||||| | || || ||||| |||||||||||||
Sbjct 13227 CCACCACGCAGACGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCA 13286
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | |||||| || ||||| || | || ||||||||| |||
Sbjct 13287 AGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 13346
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | || | || | |||| ||| ||
Sbjct 13347 ATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATTATCAATGGTGTCGGAGCTTTCCACC 13406
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| || |||||||| || |||||||| ||||||||
Sbjct 13407 TCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAAATCTGCAT 13453
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || | |||||| ||||||| ||| | || || || || ||||||||||| |
Sbjct 12998 TCCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGC 13057
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| ||| | || || | ||||||||| || ||||| | || ||||||||| |||
Sbjct 13058 CAAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 13117
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||||||| ||||| ||| | || | | || | |||| || ||
Sbjct 13118 AATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAAC 13177
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||||||||||| ||||| || || || |||||||| |||||
Sbjct 13178 CTCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||| || || | || || |||| ||||||||||| || |||||
Sbjct 13947 TCCTTCTGGATGTTATAATCAGCTAGAGTCCGTCCGTCCTCCAACTGCTTTCCGGCGAAG 14006
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| |||| ||||| || ||| | | |||||||| ||||| ||| | | |
Sbjct 14007 ATAAGCCTTTGCTGATCAGGGGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTG 14066
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | ||| | ||| || || | ||||| || || |||||||||||||||||
Sbjct 14067 TCGATTGTATCAGAACTTTCCACCTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACG 14126
Query 34379 AAGATCTGCATC 34390
||||||||||||
Sbjct 14127 AAGATCTGCATC 14138
>seq16835
Length=8075
Score = 95.1 bits (104), Expect = 8e-15
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||| || || | ||| || ||||| ||||||||||||| || ||| | ||
Sbjct 6890 AGCACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCC 6949
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || |||||||| | ||||||||||| ||| | | ||||||||
Sbjct 6950 TCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCC 7009
Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||| || ||||| | || | | || | |||| || || || || | ||||| ||
Sbjct 7010 TGGATC-TTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGT 7068
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| || || || |||||||| ||||||||||||
Sbjct 7069 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 7102
>seq558
Length=67963
Score = 95.1 bits (104), Expect = 8e-15
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||| ||||| | || ||| ||||| ||||||||||| | ||| ||| | ||
Sbjct 63845 AGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCC 63786
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| ||||| ||||| | || ||||||||| || | || ||||||||
Sbjct 63785 TCAAGCTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCC 63726
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | || | || || || || | || || ||
Sbjct 63725 TGAATCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTC 63666
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||| || || || |||||||||||||||||
Sbjct 63665 TTGCCCGTTAGGGTCTTCACAAAGATCTGCAT 63634
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||||||||| | ||| ||| | || || | |||||| || ||||||
Sbjct 17128 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTACCGGCGAAA 17187
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| | ||||||||||| || | || |||||||| ||||| ||| | || |
Sbjct 17188 ATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATTG 17247
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | || | || || || || | || || || ||||| || || || ||||||
Sbjct 17248 TCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACA 17307
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 17308 AAGATCTGCAT 17318
>seq30006
Length=21699
Score = 89.7 bits (98), Expect = 3e-13
Identities = 136/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259
||||||| |||||||| || | || ||| | || || | |||||| || ||||| |
Sbjct 12893 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 12834
Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCG 34318
| | ||||||||||| || | | |||||||| ||||| ||||| | || |
Sbjct 12833 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTA-GCTTTGACATTG 12775
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | ||| | ||||| || || | |||||| || || || || |||||||||||
Sbjct 12774 TCAATAGTGTCGCTTGATTCAACTTCAAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACG 12715
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 12714 AAGATCTGCAT 12704
>seq4902
Length=4857
Score = 89.7 bits (98), Expect = 3e-13
Identities = 152/211 (72%), Gaps = 7/211 (3%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236
||||| || |||| ||| || |||||| ||| ||||||| | || | ||| || | ||
Sbjct 819 AGCACTAGATGTAGAGTTGATTTTTTCTGGATGCTGTAGTCCGCCAAGGTGA-GGCCATC 877
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGT 34295
|| | |||||| || || ||||| |||| |||||||| | ||| || || ||||
Sbjct 878 CTCGAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGTTTTCT-TCTTTGT 936
Query 34296 CGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354
| |||||| || |||| || | | || | || | | ||||||| |||| || |||
Sbjct 937 CTTGTATCTTG-GCCTTAGCATTGTCGATAGTATTGCTGAATTCGACATCCAGAGTAATG 995
Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCT 34385
||||| | ||| ||||||||||| || ||||
Sbjct 996 GTTTTACTGGT-AGAGTTTTCACGAATATCT 1025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322902729454400
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