Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq728 141 9e-29 >seq728 Length=46982 Score = 141 bits (156), Expect = 9e-29 Identities = 561/872 (64%), Gaps = 27/872 (3%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||||||||| ||| ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 1943 GACATAACTGAGGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 2002 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG-CA 16047 | ||| ||| ||||| ||||||| ||||| | || || | ||| | | | || Sbjct 2003 TGTAAACTAATCAGCTCCATCCAATCAAATGGATTCT--GAGCATT-GTACATCTTGTCA 2059 Query 16048 T--CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | ||||| | ||| ||||| || || ||||| ||||| || | |||| ||||| Sbjct 2060 TAACCCAAAGCATCCAACAATCTGTCAGCTACAAACTCTATGTATTTACTCATCAAATCT 2119 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 | |||||||| | | | ||| | || || | || | ||||||| | Sbjct 2120 CCATTCATTCCCACCAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCC 2179 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACT----ATTTAACGGAGGGTTTAATAAGTG 16221 || || || | || | || ||| | || | ||| | | ||| || Sbjct 2180 ACAGCATCTGCAACAATTCCCCTGACT-CGCTCCTCAGTTAGCTTCGTCCTTAGCAAACT 2238 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 | || || ||| ||||||||||| ||||| |||||||| || |||||||| || Sbjct 2239 GTAAAGCAA---ACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATT 2295 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 ||| || || | || ||||||| || |||||||| | ||||||||| | || || Sbjct 2296 TGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG----AACAGA 2351 Query 16342 A----CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397 | || ||||| || |||||||| |||||| || ||||| ||||| || | | Sbjct 2352 AGCTTCCGCTGAAGAAAATCCCTTCAACACAGGCAAAAGCCACCAAACGCTCCGCGAAGG 2411 Query 16398 TTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCA 16457 || | | || ||||| ||||| || || || | || |||||| | Sbjct 2412 TT---TCGGACCCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGA 2468 Query 16458 TGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTA 16517 | |||| || ||| || || | | ||||| | ||| || || | || | Sbjct 2469 TTGTCTCAATCGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTGATGTACGACTCCA 2528 Query 16518 TTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAG 16576 || ||||| ||||| || ||||| |||||||| || || || || || ||||| |||| Sbjct 2529 ACAGCAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAG 2588 Query 16577 CATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636 || | | | |||| | || || || |||||| | || | ||| || ||| Sbjct 2589 CA-CGAACCTCGGCAACCTGGACGTCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACG 2647 Query 16637 ATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCT 16696 || || || || |||||||| ||||| | || | || |||| |||| | Sbjct 2648 ATGCCGTCTGAGGCAGCAAAAAAGGCAAGAACATGAGTGATGAAATGCCTTTCACCGGAT 2707 Query 16697 GAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756 | || ||| ||||| | | ||| | || | |||||| |||||||| ||||| ||| Sbjct 2708 GTTAGGTTTTCCCAGTGACGAGTATCGGTGGAGAGATCGACTTCTTCTACCGTCCAGAAA 2767 Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATAT 16788 || || | || || || ||||||| ||| || Sbjct 2768 GATGCCATGGCTTTCTTGTACATTTCCCAAAT 2799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462263457614000