Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq796 120 2e-22
seq558 118 8e-22
seq545 116 3e-21
seq3886 104 2e-17
>seq796
Length=44438
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||| ||| | | | | || |||
Sbjct 19725 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCTAATGTCCTTCCATCTTCC 19666
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || |||||||| || ||||||| ||| ||||| || || | ||| || |||||| |
Sbjct 19665 AACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGA 19606
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| |||||| | | | |||| || |||||||| | ||| || ||||||
Sbjct 19605 ATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTGATTGTCTTG 19546
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| ||||||||||||||||||||
Sbjct 19545 CCAGTCAAGGTCTTCACAAAGATTTGCAT 19517
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
||||||||||| ||||| ||| | | | | || |||| || || || || ||
Sbjct 19935 TCCTTCTGAATATTGTAATCGGCTAATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAA 19876
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
||||||| || ||||| || || | |||||| |||||| ||| || ||| ||
Sbjct 19875 ATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTGTCCTGAATCTTGGCCTTTACGTTG 19816
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | | |||| | |||||||| | |||||| |||||||| |||| ||||||||
Sbjct 19815 TCAATGGTGTCGGAGCTTTCCACCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACG 19756
Query 45326 AAGATTTGCAT 45336
|||||||||||
Sbjct 19755 AAGATTTGCAT 19745
>seq558
Length=67963
Score = 118 bits (130), Expect = 8e-22
Identities = 153/211 (73%), Gaps = 8/211 (4%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TCGTCCA 45188
||| || ||| ||||||||| ||||||||||| || | ||| ||| || || |
Sbjct 17115 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC----AGCTAGCGTTCGGCCATCCTCGA 17170
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || || |||||||| ||||| ||||| ||||| || || | || |||||||| ||
Sbjct 17171 GCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAA 17230
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || |||||| | | | |||| ||| ||||| | |||||| |||||||
Sbjct 17231 TCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGC 17290
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
||||||| |||||||||||||| ||||| ||
Sbjct 17291 CCGTCAGGGTCTTCACAAAGATCTGCATTTT 17321
Score = 109 bits (120), Expect = 4e-19
Identities = 151/211 (72%), Gaps = 8/211 (4%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TCGTCCA 45188
||| || ||| |||||||| ||||||||||| || | ||| ||| || || |
Sbjct 63837 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC----AGCTAGCGTTCGGCCATCCTCAA 63782
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || ||||| || || ||||||| ||| ||||| || || | || ||||||||| ||
Sbjct 63781 GCTGCTTTCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAA 63722
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || |||||| | | | |||| ||| ||||| | |||||| |||||||
Sbjct 63721 TCTTAGCCTTAACATTGTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGC 63662
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
|||| || |||||||||||||| ||||| ||
Sbjct 63661 CCGTTAGGGTCTTCACAAAGATCTGCATTTT 63631
>seq545
Length=31085
Score = 116 bits (128), Expect = 3e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| |||||||| | || |||| || || || ||||||||| |||||||||||
Sbjct 3323 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3264
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| | | || || |||||||| || || || ||||| ||||||||||| || ||
Sbjct 3263 AGAGTCCTCCCRTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3204
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| |||||||||||| ||| ||| || || | | | | || || ||| |||
Sbjct 3203 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 3144
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|||| ||||| ||||| || |||| |||||| ||||| |||||||||
Sbjct 3143 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 3096
Score = 111 bits (122), Expect = 1e-19
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| |||||||| | || |||| || || || ||||||||| |||||||||||
Sbjct 3551 CCTCCTCTCAAACGCAACACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 3492
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| | | || || || ||||| || || || ||||| ||||||||||| || ||
Sbjct 3491 AGAGTCCTCCCRTCCTCAAGWTGTTTACCAGCAAAGATCAAACGCTGTTGGTCTGGGGGA 3432
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| |||||||||||| ||| ||| || || | | | | || || ||| |||
Sbjct 3431 ATACCCTCCTTGTCTTGAATCTTTGCTTTCACATTGTCAATGGTATCTGAACTCTCAACC 3372
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| || || ||||| || |||| ||||||||||||||| |||||
Sbjct 3371 TCCAATGTGATTGTCTTCCCAGTCAAAGTCTTCACAAAGATCTGCAT 3325
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
||||||||| | | | || | |||||| || || |||||||||||||| ||
Sbjct 3096 GCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTGC 3037
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| | | || || ||||| ||||| || || ||||| | ||| ||||| |||||
Sbjct 3036 CAACGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGG 2977
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||||||||| || ||| ||||| | | | | || || ||| ||
Sbjct 2976 AATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATGGTATCTGAACTCTCAAC 2917
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||| ||||| ||||| || |||| ||||| ||||| |||||||||
Sbjct 2916 CTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTGACAAATATTTGCATG 2868
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| |||||| || |||||||| || ||| || | || || || ||
Sbjct 2616 GTGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTG 2557
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||| || || || |||| || ||| ||||| || || | ||| |||||||| ||||||
Sbjct 2556 TTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTT 2497
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
|| || | | | |||| | ||| ||||| | || || ||||| || ||
Sbjct 2496 AGCTTTGACATTATCGATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTCCCGGT 2437
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|||||| || ||||||||||||||
Sbjct 2436 CAGAGTTTTAACAAAGATTTGCAT 2413
>seq3886
Length=20373
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||||||| || ||| |||| || || || || || |||||
Sbjct 13262 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 13321
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||||| ||| ||||| || || | |||||||||||| || || ||||||
Sbjct 13322 GATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTAACATT 13381
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | |||| | |||||||||| || || ||||| || || || ||||||||
Sbjct 13382 ATCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCAC 13441
Query 45325 AAAGATTTGCAT 45336
||| || |||||
Sbjct 13442 AAAAATCTGCAT 13453
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
|||||| || ||||||||| || |||||||| || ||| | || || || ||
Sbjct 12794 GTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTG 12853
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || ||||| ||||||| ||| ||||| || || | |||||||||||| ||| ||
Sbjct 12854 CTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTT 12913
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
|| || | | | |||| || ||||||||||| || || ||||| || ||
Sbjct 12914 AGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCGGT 12973
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||||||||| |||||
Sbjct 12974 CAAGGTCTTCACAAAGATCTGCAT 12997
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || ||| ||||||||| ||||||||||| || ||| | || |||
Sbjct 13701 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCC 13760
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || ||||| || || ||||||| ||| ||||| || || | || ||||| |||
Sbjct 13761 AACTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 13820
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | || ||||| | ||||||||||||
Sbjct 13821 ATCTTAGCCTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTA 13880
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| ||||||||||| ||||| |||||
Sbjct 13881 CCCGTAAGAGTCTTCACGAAGATCTGCAT 13909
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || |||| || | ||||||||||| || |||||| || ||||||||||| |
Sbjct 12999 CCTCCCCTCAGCCTAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCC 13058
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| ||| | || || || || || || || || ||||||| ||| ||||| || ||
Sbjct 13059 AAAGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGA 13118
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| |||||||||||| || || ||| || | | | |||| | ||| |||
Sbjct 13119 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACC 13178
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||| || || || || || || ||||| ||||||||||||||
Sbjct 13179 TCCAGGGTGATGGTTTTCCCGGTAAGGGTCTTAACAAAGATTTGCAT 13225
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203
||||||||| ||||||||||| | | || | ||| | || || || || || || ||||
Sbjct 13490 CTCCTTCTGGATGTTGTAGTCAGCTAAGGT-GCGGCCATCCTCGAGCTGCTTCCCAGCGA 13548
Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263
| ||||||| ||| ||||| || || | || ||||| ||| || || ||| ||
Sbjct 13549 AGATCAACCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCCTGGATCTTAGCCTTCACGT 13608
Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323
| | | |||| | |||||||||| || || ||||| || || |||||||| |
Sbjct 13609 TGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAA 13668
Query 45324 CAAAGATTTGCAT 45336
| ||||| |||||
Sbjct 13669 CGAAGATCTGCAT 13681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394868204052790
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