Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq572 100 2e-16 seq796 89.7 4e-13 >seq572 Length=122185 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || || | |||||| ||||||||||| ||||||||||| || || Sbjct 87945 TCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGC 88004 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||||||||| ||||| || ||| | || ||||| || ||||| || Sbjct 88005 GAGGGTTCTCCCATCTTCCAACTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 88064 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 88065 TATGCCTTCTTTATC 88079 >seq796 Length=44438 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||| |||||||| || || |||||||| || || Sbjct 19288 TCCACCACGAAGACGGAGCACCAAGTGAAGRGTTGATTCCTTYTGGATGTTGTAATCAGC 19229 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | || || | || || || ||| |||| | ||| || || || ||| Sbjct 19228 AAGGGTCCTGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCTGGGGG 19169 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276 | ||||||||| || || | | |||| | | || ||| |||||| | || Sbjct 19168 AATGCCTTCCTTGTCCTGGATCT-TGGCTTTAACATTGTCAATAGTGTCGGAGCTTTCAA 19110 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||||| | || |||||||| || || ||||||||||||||| Sbjct 19109 CCTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCATT 19060 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||| || || ||||||||||||||||| ||||| Sbjct 18832 TCCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCGGC 18773 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||| | || ||||||||| |||| || || || || || ||| Sbjct 18772 GAGGGTACGGCCATCTTCAAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCTGGGGG 18713 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGG 18276 | ||||||||| || || | | |||| | | || ||| ||||| | || Sbjct 18712 AATGCCTTCCTTGTCCTGGATCT-TGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCA 18654 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 |||| ||||||| | || || || | ||||| ||||| || ||||| | || || Sbjct 18653 CCTCAAGGGTGATGGTCTTTCCAGTGAGGGTTTTGACAAATATCTGCATCTGTACAC 18597 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||| |||||||| || || |||||||| || || Sbjct 19060 TCCACCACGAAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGC 19001 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | || || | || || |||||| |||| | ||| || || || ||| Sbjct 19000 AAGGGTCCTGCCGTCCTCAAGCTGCTTTCCCGCAAAGATCAATCTCTGCTGGTCTGGGGG 18941 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || || | ||| || | ||| |||||| | || Sbjct 18940 AATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTTTCAAC 18881 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||||| | || || ||||| ||||| || |||||||||||| Sbjct 18880 CTCAAGGGTGATGGTCTTTCCTGTCAAAGTTTTCACGAAAATTTGCATT 18832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379145246267550