Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21] 42,990 sequences; 724,284,658 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq796 102 7e-17 seq16835 100 3e-16 seq30006 86.0 6e-12 seq572 86.0 6e-12 seq545 86.0 6e-12 seq3886 84.2 2e-11 >seq796 Length=44438 Score = 102 bits (112), Expect = 7e-17 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| || || || |||||| | || |||||| ||| Sbjct 19061 ATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 19120 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| | || ||||||||||||| | || || |||||| Sbjct 19121 GACACTATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 19180 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || ||| | || ||| | ||| | ||||| ||| Sbjct 19181 CAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 19240 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || ||||| |||| || Sbjct 19241 ATCCARAAGGAATCAACYCTTCACTTGGTGCT 19272 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| ||||| || || ||| | || || ||| ||| Sbjct 19745 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 19804 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || |||||| || || | || || |||||| Sbjct 19805 GACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCAG 19864 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG-CGATTATAA 31371 || | | || || |||||||| ||||||||||| | ||| || || |||||| || Sbjct 19865 CAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGAC-ATTAGCCGATTACAA 19923 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || |||||||| || | || || ||||| |||| Sbjct 19924 TATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGGTA 19973 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||| || || || |||||| | || |||||| ||| Sbjct 19289 ATGCAAATTTTTGTGAAGACCTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 19348 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| | || ||||||||||||| | || || |||||| Sbjct 19349 GACACTATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCACCAGACCAG 19408 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || ||| | || ||| ||| | ||||||||| Sbjct 19409 CAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGGACCCTTGCTGATTATAAC 19468 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || || ||||| |||| ||| Sbjct 19469 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTT 19501 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || || || || |||||| | || || ||| || Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | || | ||| | ||||||||||||| | || || ||||| Sbjct 18665 GACACCATTGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 18723 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | ||||| || | |||||| || Sbjct 18724 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAA 18783 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||| || |||||||| |||| || Sbjct 18784 CATTCAAAAAGAGTCCACTCTTCACTTGGTGCT 18816 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||| ||||||| || || |||||| | || |||||| || Sbjct 18833 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 18892 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 18893 GACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 18952 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || ||| | || ||| | ||| | ||||| ||| Sbjct 18953 CAGAGATTGATCTTTGCGGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 19012 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || ||||| |||| || Sbjct 19013 ATCCAGAAGGAATCAACCCTTCACTTGGTGCT 19044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| ||||| || |||||| | || || ||| || Sbjct 19517 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 19576 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| |||||| ||||| | || || |||||| Sbjct 19577 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 19636 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG-CGATTATAA 31371 ||| | | || || || || || ||||||||||| | ||| || || |||||| || Sbjct 19637 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGAAGGAC-ATTAGCCGATTACAA 19695 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || ||||| |||| || Sbjct 19696 CATCCAGAAGGAGTCAACCCTTCACTTGGTCCT 19728 >seq16835 Length=8075 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || ||||||||| | || ||||| | Sbjct 7104 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 7045 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | |||||| | || |||||||||||| | || || ||| Sbjct 7044 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 6985 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || ||||| || || ||| | || || | ||| | ||| || Sbjct 6984 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 6925 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| ||||| || || Sbjct 6924 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 6890 >seq30006 Length=21699 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || ||||| || || || |||||||| | || |||||| | Sbjct 12701 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCA 12760 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | | || | |||||| | || ||||||||||| | || || ||| Sbjct 12761 AGCGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGAC 12820 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC-GATT 31367 |||||||| | || ||||| || || ||| | ||||| | | | ||| | ||| |||| Sbjct 12821 CAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGA-TGGACGTACTCT-AGCTGATT 12878 Query 31368 ATAACATTCAAAAAG 31382 | |||||||| |||| Sbjct 12879 ACAACATTCAGAAAG 12893 >seq572 Length=122185 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||| || |||||| | || || || |||||| | || || || ||||| ||||||||||| Sbjct 88080 GGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAGTTGGA 88021 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | || | ||||| |||||||| |||||||| |||||||| || || || Sbjct 88020 AGATGGGAGAACCCTCGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTCT 87961 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 87960 GAGGCTCAGGGGAGG 87946 >seq545 Length=31085 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || |||||| | || |||||| ||| Sbjct 2641 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 2700 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | ||| |||||||||||| | || || |||||| Sbjct 2701 GATACCATTGACAACGTGAAGGCCAAAATTCAGGACAAGGAAGGGATTCCTCCAGACCAG 2760 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| || | || || | ||| || || || || Sbjct 2761 CAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAAT 2820 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| || || | ||||| || ||| |||||||||| || Sbjct 2821 ATTCAGAAAGAGTCTACCTTACATCTTGTTCTTCGACTGAGGGGTGG 2867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || |||||||| || || || || || | || || || || Sbjct 2185 ATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTCA 2244 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| ||||||||||| | || || |||||| Sbjct 2245 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 2304 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | || || || ||||| |||||| | ||||| | || | || ||||| || Sbjct 2305 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGA-TGGCCGAACACTTGCTGATTACAA 2363 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| |||||||| || || ||||| || || || Sbjct 2364 CATCCAAAAAGAGTCTACCCTTCACCTTGTCCT 2396 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || |||||||| || || || || || | || || || || Sbjct 2413 ATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTCA 2472 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| ||||||||||| | || || |||||| Sbjct 2473 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 2532 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | || || || ||||| |||||| | ||||| | || | || ||||| || Sbjct 2533 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGA-TGGCCGAACACTTGCTGATTACAA 2591 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| || || || ||||| || || ||| | || | || |||| Sbjct 2592 CATCCAAAAGGAGTCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGTA 2641 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| || || || ||||| | || || || || Sbjct 3553 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACAATCACATTGGAGGTGGAGAGCTCT 3612 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | || ||| || ||| || |||||||||||| | || || || || Sbjct 3613 GATACTATTGACAATGTGAAAGCAAAGA-TACAGGACAAGGAAGGGATCCCACCAGATCA 3671 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || ||||| || ||| | || || | || | || ||||| Sbjct 3672 ACAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCAGACTATAA 3731 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || ||||| || ||||||||||| || || || || | |||||| Sbjct 3732 CATCCAGAAAGAGTCTACTCTTCATCTTGTCCTGAGGCTCCGTGGCGGT 3780 >seq3886 Length=20373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || ||||| || || || || |||||| | || || ||| || Sbjct 14137 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 14078 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| |||| | | | ||| | |||||||||||| | || || || || Sbjct 14077 GATACAATCGACAACGTTAAGGCTAAGA-TCCAGGACAAGGAAGGGATTCCCCCTGATCA 14019 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 ||| | || || ||||| || || |||||||| ||| |||| | ||| ||||||| Sbjct 14018 GCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGGACTCT-AGCTGATTATA 13960 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || || || || || || ||| |||| || Sbjct 13959 ACATCCAGAAGGAGTCCACCCTCCATTTGGTGCT 13926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445526856280800