Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20habrochaites_20[genbank_20GCA_5F000577655.1_202014-02-21]
42,990 sequences; 724,284,658 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq796 102 7e-17
seq16835 100 3e-16
seq30006 86.0 6e-12
seq572 86.0 6e-12
seq545 86.0 6e-12
seq3886 84.2 2e-11
>seq796
Length=44438
Score = 102 bits (112), Expect = 7e-17
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || |||||| |||| || || || |||||| | || |||||| |||
Sbjct 19061 ATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 19120
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | || ||| | || ||||||||||||| | || || ||||||
Sbjct 19121 GACACTATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 19180
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || || || || || ||| | || ||| | ||| | ||||| |||
Sbjct 19181 CAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 19240
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || ||||| || ||||| |||| ||
Sbjct 19241 ATCCARAAGGAATCAACYCTTCACTTGGTGCT 19272
Score = 102 bits (112), Expect = 7e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| |||| ||||| || || ||| | || || ||| |||
Sbjct 19745 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 19804
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || |||||| || || | || || ||||||
Sbjct 19805 GACACCATTGACAACGTAAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCAGACCAG 19864
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG-CGATTATAA 31371
|| | | || || |||||||| ||||||||||| | ||| || || |||||| ||
Sbjct 19865 CAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGAC-ATTAGCCGATTACAA 19923
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || ||||| || |||||||| || | || || ||||| ||||
Sbjct 19924 TATTCAGAAGGAATCAACCCTTCATCTTGTGTTGAGGCTCAGGGGAGGTA 19973
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || ||||| |||| || || || |||||| | || |||||| |||
Sbjct 19289 ATGCAAATTTTTGTGAAGACCTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 19348
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | || ||| | || ||||||||||||| | || || ||||||
Sbjct 19349 GACACTATTGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCACCAGACCAG 19408
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || || || || || ||| | || ||| ||| | |||||||||
Sbjct 19409 CAGAGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGGACCCTTGCTGATTATAAC 19468
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|| || || || || || ||||| |||| |||
Sbjct 19469 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTT 19501
Score = 89.7 bits (98), Expect = 5e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || || || || || || || || |||||| | || || ||| ||
Sbjct 18605 ATGCAGATATTTGTCAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAAAGCTCA 18664
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || |||| | || | ||| | ||||||||||||| | || || |||||
Sbjct 18665 GACACCATTGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 18723
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || || ||||| ||| | ||||| || | |||||| ||
Sbjct 18724 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTTGAAGATGGCCGTACCCTCGCCGATTACAA 18783
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||||||||| || |||||||| |||| ||
Sbjct 18784 CATTCAAAAAGAGTCCACTCTTCACTTGGTGCT 18816
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| || ||| ||||||| || || |||||| | || |||||| ||
Sbjct 18833 ATGCAAATTTTCGTGAAAACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCT 18892
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||||||||||||| | || || ||||||
Sbjct 18893 GACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 18952
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || || || || || ||| | || ||| | ||| | ||||| |||
Sbjct 18953 CAGAGATTGATCTTTGCGGGAAAGCAGCTTGAGGACGGCAGGACCCTTGCTGATTACAAC 19012
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || ||||| || ||||| |||| ||
Sbjct 19013 ATCCAGAAGGAATCAACCCTTCACTTGGTGCT 19044
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| |||| ||||| || |||||| | || || ||| ||
Sbjct 19517 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACAATCACCCTTGAGGTGGAAAGTTCT 19576
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | ||| |||||| ||||| | || || ||||||
Sbjct 19577 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 19636
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG-CGATTATAA 31371
||| | | || || || || || ||||||||||| | ||| || || |||||| ||
Sbjct 19637 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGAAGGAC-ATTAGCCGATTACAA 19695
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || ||||| |||| ||
Sbjct 19696 CATCCAGAAGGAGTCAACCCTTCACTTGGTCCT 19728
>seq16835
Length=8075
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| || || || || || || ||||||||| | || ||||| |
Sbjct 7104 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 7045
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | |||||| | || |||||||||||| | || || |||
Sbjct 7044 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 6985
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
||||||||| | || ||||| || || ||| | || || | ||| | ||| ||
Sbjct 6984 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 6925
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || ||||| ||||| || ||
Sbjct 6924 AACATCCAGAAGGAGTCCACTCTCCATCTCGTGCT 6890
>seq30006
Length=21699
Score = 86.0 bits (94), Expect = 6e-12
Identities = 139/195 (71%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| || ||||| || || || |||||||| | || |||||| |
Sbjct 12701 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACGCTTGAAGTTGAATCA 12760
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||| | | || | |||||| | || ||||||||||| | || || |||
Sbjct 12761 AGCGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGAC 12820
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC-GATT 31367
|||||||| | || ||||| || || ||| | ||||| | | | ||| | ||| ||||
Sbjct 12821 CAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGA-TGGACGTACTCT-AGCTGATT 12878
Query 31368 ATAACATTCAAAAAG 31382
| |||||||| ||||
Sbjct 12879 ACAACATTCAGAAAG 12893
>seq572
Length=122185
Score = 86.0 bits (94), Expect = 6e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344
||| || |||||| | || || || |||||| | || || || ||||| |||||||||||
Sbjct 88080 GGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGAAAACAGTTGGA 88021
Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| | || | ||||| |||||||| |||||||| |||||||| || || ||
Sbjct 88020 AGATGGGAGAACCCTCGCTGATTACAACATTCAGAAAGAATCAACTCTTCACCTTGTTCT 87961
Query 31405 TAGACTGAGGGGCGG 31419
|| || ||||| ||
Sbjct 87960 GAGGCTCAGGGGAGG 87946
>seq545
Length=31085
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| || || || || || |||||| | || |||||| |||
Sbjct 2641 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCC 2700
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || || | ||| |||||||||||| | || || ||||||
Sbjct 2701 GATACCATTGACAACGTGAAGGCCAAAATTCAGGACAAGGAAGGGATTCCTCCAGACCAG 2760
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || || ||||| || | || || | ||| || || || ||
Sbjct 2761 CAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAAT 2820
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| ||||| || || | ||||| || ||| |||||||||| ||
Sbjct 2821 ATTCAGAAAGAGTCTACCTTACATCTTGTTCTTCGACTGAGGGGTGG 2867
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || || |||||||| || || || || || | || || || ||
Sbjct 2185 ATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTCA 2244
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | |||||| | ||| ||||||||||| | || || ||||||
Sbjct 2245 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 2304
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371
||| | || || || ||||| |||||| | ||||| | || | || ||||| ||
Sbjct 2305 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGA-TGGCCGAACACTTGCTGATTACAA 2363
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| |||||||| || || ||||| || || ||
Sbjct 2364 CATCCAAAAAGAGTCTACCCTTCACCTTGTCCT 2396
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || || |||||||| || || || || || | || || || ||
Sbjct 2413 ATGCAAATCTTTGTTAAAACTCTGACCGGGAAGACTATAACTCTTGAGGTCGAGAGCTCA 2472
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | |||||| | ||| ||||||||||| | || || ||||||
Sbjct 2473 GACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 2532
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371
||| | || || || ||||| |||||| | ||||| | || | || ||||| ||
Sbjct 2533 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGA-TGGCCGAACACTTGCTGATTACAA 2591
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| ||||| || || || ||||| || || ||| | || | || ||||
Sbjct 2592 CATCCAAAAGGAGTCCACCCTTCACCTTGTCCTTCGCCTTCGTGGTGGTA 2641
Score = 82.4 bits (90), Expect = 7e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||||||||| || || || ||||| | || || || ||
Sbjct 3553 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACAATCACATTGGAGGTGGAGAGCTCT 3612
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | | || | || ||| || ||| || |||||||||||| | || || || ||
Sbjct 3613 GATACTATTGACAATGTGAAAGCAAAGA-TACAGGACAAGGAAGGGATCCCACCAGATCA 3671
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | || || || ||||| || ||| | || || | || | || |||||
Sbjct 3672 ACAGAGGCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGTCGCACCCTTGCAGACTATAA 3731
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||| || ||||| || ||||||||||| || || || || | ||||||
Sbjct 3732 CATCCAGAAAGAGTCTACTCTTCATCTTGTCCTGAGGCTCCGTGGCGGT 3780
>seq3886
Length=20373
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| || ||||| || || || || |||||| | || || ||| ||
Sbjct 14137 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTAGAGGTGGAAAGTTCT 14078
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | |||| |||| | | | ||| | |||||||||||| | || || || ||
Sbjct 14077 GATACAATCGACAACGTTAAGGCTAAGA-TCCAGGACAAGGAAGGGATTCCCCCTGATCA 14019
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370
||| | || || ||||| || || |||||||| ||| |||| | ||| |||||||
Sbjct 14018 GCAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGGACTCT-AGCTGATTATA 13960
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||| || || || || || || ||| |||| ||
Sbjct 13959 ACATCCAGAAGGAGTCCACCCTCCATTTGGTGCT 13926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445526856280800
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